CsGy4G016090 (gene) Cucumber (Gy14) v2

Overview
NameCsGy4G016090
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
Descriptionprotein RETICULATA-RELATED 3, chloroplastic
LocationChr4 : 20824320 .. 20826536 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GTTTCTTTGGAGTTAACAAAATTATTGTGATTTTGCAAATTGTTCATGTCTACGGCAAAACCTCGTTAGGGTTTACGGAGGAAGAAAGAGAAATGATGACACAGATTTAACGTCTGACGAATAACAACAATCTTCTCTCTCTATATATATACAAACATATACTGTATATCTATATATTGATTCGTTTGTCCAACGGTGCCGTTTTTGACACATTTCATTTCACCCACCAACGCCTCCATTCAATTCCCTCTCAATTTTCTGCTGCGCCAATTCACCATCCTTTTCTAATTTGTTCTTAACTTCCCCTTTCTTCTCTGCTTCTTTAGGTAATTTTAATTTCCCATCATATTTTGCATGTATTTTATGCTGATCATATGATCTCTGTTATGGCTTGTTTCCATTTTCATTCATTTTTCTGCTTTCAGATCTGGTGAATATTTGTTAGATTGCTTTCTGTTTCTTTTTCTCTATAATGGGTTTATGATGTTCTTTTTTTTCTTTTAAATTTTTGTTTGTTGTTCGTGTTTTCTTTTCAGATTTGAGGAGTTGGGTAGGTTTTGTTTGTGGGATTTTTGTTTGAACCATGGCGGCTATGGCTCAGCTGCATTGTTCTGTTCGCCCTAGACAATACTACAGTGTTCCTAATAATCATGGTTTTAACAACACTCCGGCTTTCTCTTTTCTCTCTAATTCATCGGCTGTTGAATCGAGGAGTCGATCTCTTTCTCTTTCTCTTTTTAATGCGGATTTAACTAGGCCTAGTTTTTTAGCAAAATCTGAGCTTTCTCTGGCTGGAGGCGACGGTGGAAACGGCGTTGGCCATGGCGGAAGAGGTGGTGGAGGTGGTGGTGATGGTGGTTGGAGTGATGATCGAACTCATGGTGATGATGATGATTCATCAAGTTTTGGAGTGTTGGGATTGTTTCTTAAAGGGTGGAGATCTAGAGTTGCTGCAGATCCACAATTTCCTTTCAAGGTACTGATGGAAGAATTGGTTGGTGTGAGTTCTTGTGTTCTTGGAGACATGGCGTCTCGTCCCAACTTCGGTCTCAATGAGCTCGACTTTGTCTTCTCCACTCTTGTCGTCGGATCTATACTGAATTTCACTCTCATGTATCTCTTAGCTCCCACTGCAGCAGCTGGTGTTGCAGCCCAGCGGCTACCTTCAATCTTTGCAAGTTGCCCCACTAGTCATATGTTTGAACCCGGCGCATTCACGCTCTTAGATCGAGTGGGAACCTTTGTTTACAAAGGAACTGTCTTCGCCGCAGTTGGACTAGCAGCCGGGCTTGTAGGGACTGCACTCTCGAATGGTTTGATCATGCTAAGGAAGAAAATGGATCCTGGATTCGAGACACCGAATAAGGCGCCTCCGACATTGTTGAATGCGATGACTTGGGCAATTCACATGGGGGTTAGCAGTAACTTGAGATATCAAACTTTGAATGGAGTTGAATATGTGTTGGCCAAGGGGCTTCCTCCTCTGGCATTTAAGAGCTCTGTAGTGGTGTTGAGATGTTTGAACAACGTTCTTGGGGGGATGTCATTTGTCGTGCTTGCGCGGATGACAGGTTCACAAAGCGTCGAGGGGCCGAAGACAGCAGGAGTGGAGTTGGATTCTGGTGATGAGAAAGAGAAACTGTTGGAGGGAGATAAAGAGGAAGAGCTAAGGAGCAACCAAACAGCTTGCAAGTGATAAACAATGGATGATTGAGATTATTAAAGAGAAAGGGCTTTATGAAAGAATTTGGTTGGTATGATTATAGCTTTAACTTTCTCCATTGTTAATATATGCTTCAAGCTCTGAGTGAGTAAGGATAATTTTAGTTTGCTTGTATAACAATAAGAAGCTCAAAGTGCTGTGAGGATTCTGAATTTAGGTTTCACTACGAGTTTTCATTGATGAATGAGCTGCTTTACTTTTTCTTGGCTAAATCTGAAGGACAATAACATCCCTTTTTTTTAATGAATGGATCATATTTGTAGGCAAAGGCTGAACCTACCAAACATAGATACGACATGATACATACACGGTGTTATATTTTAAAAATTCAGAACACAACATGACTTAGGACATATAAAAGAAAGTTCATAGTAAATGATTGAAACATTTATATGTATATGCTTAAAAAAATTTAGCTTGATGTATTCTACACTTATATTCTTATTGTCATATTATGTATCTTTGTAATCTACTCCCAGTATATCTAATGCATT

mRNA sequence

GTTTCTTTGGAGTTAACAAAATTATTGTGATTTTGCAAATTGTTCATGTCTACGGCAAAACCTCGTTAGGGTTTACGGAGGAAGAAAGAGAAATGATGACACAGATTTAACGTCTGACGAATAACAACAATCTTCTCTCTCTATATATATACAAACATATACTGTATATCTATATATTGATTCGTTTGTCCAACGGTGCCGTTTTTGACACATTTCATTTCACCCACCAACGCCTCCATTCAATTCCCTCTCAATTTTCTGCTGCGCCAATTCACCATCCTTTTCTAATTTGTTCTTAACTTCCCCTTTCTTCTCTGCTTCTTTAGATTTGAGGAGTTGGGTAGGTTTTGTTTGTGGGATTTTTGTTTGAACCATGGCGGCTATGGCTCAGCTGCATTGTTCTGTTCGCCCTAGACAATACTACAGTGTTCCTAATAATCATGGTTTTAACAACACTCCGGCTTTCTCTTTTCTCTCTAATTCATCGGCTGTTGAATCGAGGAGTCGATCTCTTTCTCTTTCTCTTTTTAATGCGGATTTAACTAGGCCTAGTTTTTTAGCAAAATCTGAGCTTTCTCTGGCTGGAGGCGACGGTGGAAACGGCGTTGGCCATGGCGGAAGAGGTGGTGGAGGTGGTGGTGATGGTGGTTGGAGTGATGATCGAACTCATGGTGATGATGATGATTCATCAAGTTTTGGAGTGTTGGGATTGTTTCTTAAAGGGTGGAGATCTAGAGTTGCTGCAGATCCACAATTTCCTTTCAAGGTACTGATGGAAGAATTGGTTGGTGTGAGTTCTTGTGTTCTTGGAGACATGGCGTCTCGTCCCAACTTCGGTCTCAATGAGCTCGACTTTGTCTTCTCCACTCTTGTCGTCGGATCTATACTGAATTTCACTCTCATGTATCTCTTAGCTCCCACTGCAGCAGCTGGTGTTGCAGCCCAGCGGCTACCTTCAATCTTTGCAAGTTGCCCCACTAGTCATATGTTTGAACCCGGCGCATTCACGCTCTTAGATCGAGTGGGAACCTTTGTTTACAAAGGAACTGTCTTCGCCGCAGTTGGACTAGCAGCCGGGCTTGTAGGGACTGCACTCTCGAATGGTTTGATCATGCTAAGGAAGAAAATGGATCCTGGATTCGAGACACCGAATAAGGCGCCTCCGACATTGTTGAATGCGATGACTTGGGCAATTCACATGGGGGTTAGCAGTAACTTGAGATATCAAACTTTGAATGGAGTTGAATATGTGTTGGCCAAGGGGCTTCCTCCTCTGGCATTTAAGAGCTCTGTAGTGGTGTTGAGATGTTTGAACAACGTTCTTGGGGGGATGTCATTTGTCGTGCTTGCGCGGATGACAGGTTCACAAAGCGTCGAGGGGCCGAAGACAGCAGGAGTGGAGTTGGATTCTGGTGATGAGAAAGAGAAACTGTTGGAGGGAGATAAAGAGGAAGAGCTAAGGAGCAACCAAACAGCTTGCAAGTGATAAACAATGGATGATTGAGATTATTAAAGAGAAAGGGCTTTATGAAAGAATTTGGTTGGTATGATTATAGCTTTAACTTTCTCCATTGTTAATATATGCTTCAAGCTCTGAGTGAGTAAGGATAATTTTAGTTTGCTTGTATAACAATAAGAAGCTCAAAGTGCTGTGAGGATTCTGAATTTAGGTTTCACTACGAGTTTTCATTGATGAATGAGCTGCTTTACTTTTTCTTGGCTAAATCTGAAGGACAATAACATCCCTTTTTTTTAATGAATGGATCATATTTGTAGGCAAAGGCTGAACCTACCAAACATAGATACGACATGATACATACACGGTGTTATATTTTAAAAATTCAGAACACAACATGACTTAGGACATATAAAAGAAAGTTCATAGTAAATGATTGAAACATTTATATGTATATGCTTAAAAAAATTTAGCTTGATGTATTCTACACTTATATTCTTATTGTCATATTATGTATCTTTGTAATCTACTCCCAGTATATCTAATGCATT

Coding sequence (CDS)

ATGGCGGCTATGGCTCAGCTGCATTGTTCTGTTCGCCCTAGACAATACTACAGTGTTCCTAATAATCATGGTTTTAACAACACTCCGGCTTTCTCTTTTCTCTCTAATTCATCGGCTGTTGAATCGAGGAGTCGATCTCTTTCTCTTTCTCTTTTTAATGCGGATTTAACTAGGCCTAGTTTTTTAGCAAAATCTGAGCTTTCTCTGGCTGGAGGCGACGGTGGAAACGGCGTTGGCCATGGCGGAAGAGGTGGTGGAGGTGGTGGTGATGGTGGTTGGAGTGATGATCGAACTCATGGTGATGATGATGATTCATCAAGTTTTGGAGTGTTGGGATTGTTTCTTAAAGGGTGGAGATCTAGAGTTGCTGCAGATCCACAATTTCCTTTCAAGGTACTGATGGAAGAATTGGTTGGTGTGAGTTCTTGTGTTCTTGGAGACATGGCGTCTCGTCCCAACTTCGGTCTCAATGAGCTCGACTTTGTCTTCTCCACTCTTGTCGTCGGATCTATACTGAATTTCACTCTCATGTATCTCTTAGCTCCCACTGCAGCAGCTGGTGTTGCAGCCCAGCGGCTACCTTCAATCTTTGCAAGTTGCCCCACTAGTCATATGTTTGAACCCGGCGCATTCACGCTCTTAGATCGAGTGGGAACCTTTGTTTACAAAGGAACTGTCTTCGCCGCAGTTGGACTAGCAGCCGGGCTTGTAGGGACTGCACTCTCGAATGGTTTGATCATGCTAAGGAAGAAAATGGATCCTGGATTCGAGACACCGAATAAGGCGCCTCCGACATTGTTGAATGCGATGACTTGGGCAATTCACATGGGGGTTAGCAGTAACTTGAGATATCAAACTTTGAATGGAGTTGAATATGTGTTGGCCAAGGGGCTTCCTCCTCTGGCATTTAAGAGCTCTGTAGTGGTGTTGAGATGTTTGAACAACGTTCTTGGGGGGATGTCATTTGTCGTGCTTGCGCGGATGACAGGTTCACAAAGCGTCGAGGGGCCGAAGACAGCAGGAGTGGAGTTGGATTCTGGTGATGAGAAAGAGAAACTGTTGGAGGGAGATAAAGAGGAAGAGCTAAGGAGCAACCAAACAGCTTGCAAGTGA

Protein sequence

MAAMAQLHCSVRPRQYYSVPNNHGFNNTPAFSFLSNSSAVESRSRSLSLSLFNADLTRPSFLAKSELSLAGGDGGNGVGHGGRGGGGGGDGGWSDDRTHGDDDDSSSFGVLGLFLKGWRSRVAADPQFPFKVLMEELVGVSSCVLGDMASRPNFGLNELDFVFSTLVVGSILNFTLMYLLAPTAAAGVAAQRLPSIFASCPTSHMFEPGAFTLLDRVGTFVYKGTVFAAVGLAAGLVGTALSNGLIMLRKKMDPGFETPNKAPPTLLNAMTWAIHMGVSSNLRYQTLNGVEYVLAKGLPPLAFKSSVVVLRCLNNVLGGMSFVVLARMTGSQSVEGPKTAGVELDSGDEKEKLLEGDKEEELRSNQTACK
Homology
[Close]
BLAST of CsGy4G016090 vs. NCBI nr
Match: XP_004142670.1 (PREDICTED: uncharacterized protein LOC101209534 [Cucumis sativus] >KGN54469.1 hypothetical protein Csa_4G337260 [Cucumis sativus])

HSP 1 Score: 637.5 bits (1643), Expect = 2.8e-179
Identity = 370/370 (100.00%), Postives = 370/370 (100.00%), Query Frame = 0 

Query: 1   MAAMAQLHCSVRPRQYYSVPNNHGFNNTPAFSFLSNSSAVESRSRSLSLSLFNADLTRPS 60
           MAAMAQLHCSVRPRQYYSVPNNHGFNNTPAFSFLSNSSAVESRSRSLSLSLFNADLTRPS
Sbjct: 1   MAAMAQLHCSVRPRQYYSVPNNHGFNNTPAFSFLSNSSAVESRSRSLSLSLFNADLTRPS 60

Query: 61  FLAKSELSLAGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSFGVLGLFLKGWRS 120
           FLAKSELSLAGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSFGVLGLFLKGWRS
Sbjct: 61  FLAKSELSLAGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSFGVLGLFLKGWRS 120

Query: 121 RVAADPQFPFKVLMEELVGVSSCVLGDMASRPNFGLNELDFVFSTLVVGSILNFTLMYLL 180
           RVAADPQFPFKVLMEELVGVSSCVLGDMASRPNFGLNELDFVFSTLVVGSILNFTLMYLL
Sbjct: 121 RVAADPQFPFKVLMEELVGVSSCVLGDMASRPNFGLNELDFVFSTLVVGSILNFTLMYLL 180

Query: 181 APTAAAGVAAQRLPSIFASCPTSHMFEPGAFTLLDRVGTFVYKGTVFAAVGLAAGLVGTA 240
           APTAAAGVAAQRLPSIFASCPTSHMFEPGAFTLLDRVGTFVYKGTVFAAVGLAAGLVGTA
Sbjct: 181 APTAAAGVAAQRLPSIFASCPTSHMFEPGAFTLLDRVGTFVYKGTVFAAVGLAAGLVGTA 240

Query: 241 LSNGLIMLRKKMDPGFETPNKAPPTLLNAMTWAIHMGVSSNLRYQTLNGVEYVLAKGLPP 300
           LSNGLIMLRKKMDPGFETPNKAPPTLLNAMTWAIHMGVSSNLRYQTLNGVEYVLAKGLPP
Sbjct: 241 LSNGLIMLRKKMDPGFETPNKAPPTLLNAMTWAIHMGVSSNLRYQTLNGVEYVLAKGLPP 300

Query: 301 LAFKSSVVVLRCLNNVLGGMSFVVLARMTGSQSVEGPKTAGVELDSGDEKEKLLEGDKEE 360
           LAFKSSVVVLRCLNNVLGGMSFVVLARMTGSQSVEGPKTAGVELDSGDEKEKLLEGDKEE
Sbjct: 301 LAFKSSVVVLRCLNNVLGGMSFVVLARMTGSQSVEGPKTAGVELDSGDEKEKLLEGDKEE 360

Query: 361 ELRSNQTACK 371
           ELRSNQTACK
Sbjct: 361 ELRSNQTACK 370

[Close]
BLAST of CsGy4G016090 vs. NCBI nr
Match: XP_008463291.1 (PREDICTED: protein RETICULATA-RELATED 3, chloroplastic [Cucumis melo] >XP_016903009.1 PREDICTED: protein RETICULATA-RELATED 3, chloroplastic [Cucumis melo])

HSP 1 Score: 621.7 bits (1602), Expect = 1.6e-174
Identity = 360/370 (97.30%), Postives = 366/370 (98.92%), Query Frame = 0 

Query: 1   MAAMAQLHCSVRPRQYYSVPNNHGFNNTPAFSFLSNSSAVESRSRSLSLSLFNADLTRPS 60
           MAAMAQLHCSVRPRQYY+VPNNHGFNNTPAFSFLSNSS VESRSRSLSLSLFNADLTR S
Sbjct: 1   MAAMAQLHCSVRPRQYYNVPNNHGFNNTPAFSFLSNSSVVESRSRSLSLSLFNADLTRRS 60

Query: 61  FLAKSELSLAGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSFGVLGLFLKGWRS 120
           +LAKSELSLAGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSFGVLGLFLKGWRS
Sbjct: 61  YLAKSELSLAGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSFGVLGLFLKGWRS 120

Query: 121 RVAADPQFPFKVLMEELVGVSSCVLGDMASRPNFGLNELDFVFSTLVVGSILNFTLMYLL 180
           RVAADPQFPFKVLMEELVGVSSCVLGDMASRPNFGLNELDFVFSTLVVGSILNFTLMYLL
Sbjct: 121 RVAADPQFPFKVLMEELVGVSSCVLGDMASRPNFGLNELDFVFSTLVVGSILNFTLMYLL 180

Query: 181 APTAAAGVAAQRLPSIFASCPTSHMFEPGAFTLLDRVGTFVYKGTVFAAVGLAAGLVGTA 240
           APTAAAG  A++LPSIFASCPTSHMFEPGAFTLLDR+GTFVYKGTVFAAVGLAAGLVGTA
Sbjct: 181 APTAAAGAVAKQLPSIFASCPTSHMFEPGAFTLLDRLGTFVYKGTVFAAVGLAAGLVGTA 240

Query: 241 LSNGLIMLRKKMDPGFETPNKAPPTLLNAMTWAIHMGVSSNLRYQTLNGVEYVLAKGLPP 300
           LSNGLIMLRKKMDPGFETPNKAPPTLLNAMTWAIHMGVSSNLRYQTLNGVEYVLAKGLPP
Sbjct: 241 LSNGLIMLRKKMDPGFETPNKAPPTLLNAMTWAIHMGVSSNLRYQTLNGVEYVLAKGLPP 300

Query: 301 LAFKSSVVVLRCLNNVLGGMSFVVLARMTGSQSVEGPKTAGVELDSGDEKEKLLEGDKEE 360
           LAFKSSVVVLRCLNNVLGGMSFVVLAR+TGSQSVEGPKTAGVELDSGDEKEKLLEGDKEE
Sbjct: 301 LAFKSSVVVLRCLNNVLGGMSFVVLARLTGSQSVEGPKTAGVELDSGDEKEKLLEGDKEE 360

Query: 361 ELRSNQTACK 371
           ELRSNQTACK
Sbjct: 361 ELRSNQTACK 370

[Close]
BLAST of CsGy4G016090 vs. NCBI nr
Match: XP_022156248.1 (protein RETICULATA-RELATED 3, chloroplastic [Momordica charantia])

HSP 1 Score: 555.8 bits (1431), Expect = 1.1e-154
Identity = 325/363 (89.53%), Postives = 347/363 (95.59%), Query Frame = 0 

Query: 1   MAAMAQLHCSVRPRQYYSVPNNHGFNNTPAFSFLSNSSAVESRSRSLSLSLFNADLTRPS 60
           MAAMAQLHCS+RPR YY+VP NH +NNTPAFSFLS+SS ++SR+R  SLSLF+ DLTRPS
Sbjct: 1   MAAMAQLHCSLRPRNYYNVPCNHAYNNTPAFSFLSDSSVIQSRTR--SLSLFHTDLTRPS 60

Query: 61  FLAKSELSLAGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSFGVLGLFLKGWRS 120
           FLAKSELSLA  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSFGVLGLFLKGWRS
Sbjct: 61  FLAKSELSLAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSFGVLGLFLKGWRS 120

Query: 121 RVAADPQFPFKVLMEELVGVSSCVLGDMASRPNFGLNELDFVFSTLVVGSILNFTLMYLL 180
           RVAADPQFPFKVLMEELVGVS+CVLGDMASRPNFGLNELDFVFSTLVVGSILNFTLMYLL
Sbjct: 121 RVAADPQFPFKVLMEELVGVSACVLGDMASRPNFGLNELDFVFSTLVVGSILNFTLMYLL 180

Query: 181 APTAAAGVAAQRLPSIFASCPTSHMFEPGAFTLLDRVGTFVYKGTVFAAVGLAAGLVGTA 240
           APTAAAGVAA++LP+IF+SCPTSHMFEPGAFT+LDR+GTFVYKGTVFAAVGLAAGLVGTA
Sbjct: 181 APTAAAGVAAKQLPAIFSSCPTSHMFEPGAFTVLDRLGTFVYKGTVFAAVGLAAGLVGTA 240

Query: 241 LSNGLIMLRKKMDPGFETPNKAPPTLLNAMTWAIHMGVSSNLRYQTLNGVEYVLAKGLPP 300
           LSNGLI LRKKMDP FETPNKAPPTLLNA+TWAIHMGVSSNLRYQTLNGVE+VLAKGLPP
Sbjct: 241 LSNGLIKLRKKMDPEFETPNKAPPTLLNALTWAIHMGVSSNLRYQTLNGVEFVLAKGLPP 300

Query: 301 LAFKSSVVVLRCLNNVLGGMSFVVLARMTGSQSVEGPKTAGVELDSGDEKEKLLEGDKEE 360
           LAFKSSVVVLRCLNNVLGG+SFV+LAR TGSQS+E PK A VELDS DEKEKLLEGDK+E
Sbjct: 301 LAFKSSVVVLRCLNNVLGGVSFVILARATGSQSIEQPKAAAVELDSADEKEKLLEGDKDE 360

Query: 361 ELR 364
           EL+
Sbjct: 361 ELK 361

[Close]
BLAST of CsGy4G016090 vs. NCBI nr
Match: XP_022966374.1 (protein RETICULATA-RELATED 3, chloroplastic [Cucurbita maxima])

HSP 1 Score: 536.2 bits (1380), Expect = 8.9e-149
Identity = 309/363 (85.12%), Postives = 334/363 (92.01%), Query Frame = 0 

Query: 1   MAAMAQLHCSVRPRQYYSVPNNHGFNNTPAFSFLSNSSAVESRSRSLSLSLFNADLTRPS 60
           MA+MAQLHCSVRPR YY+VP++H +NN PAFSFLSNSSAVESRSR  SLSLFNADLTR  
Sbjct: 1   MASMAQLHCSVRPRNYYNVPSSHAYNNPPAFSFLSNSSAVESRSR--SLSLFNADLTRSR 60

Query: 61  FLAKSELSLAGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSFGVLGLFLKGWRS 120
           FL KSELSLA GXXXXXXXXXXXXXXXXXXXXXXXXXX        SFGV GLFL+GWR+
Sbjct: 61  FLVKSELSLA-GXXXXXXXXXXXXXXXXXXXXXXXXXXRADGDDSSSFGVFGLFLQGWRT 120

Query: 121 RVAADPQFPFKVLMEELVGVSSCVLGDMASRPNFGLNELDFVFSTLVVGSILNFTLMYLL 180
           RVAADPQFPFKVLMEELVGVS+CVLGDMASRPNFGLNELDFVFSTLVVGSILNFTLMYLL
Sbjct: 121 RVAADPQFPFKVLMEELVGVSACVLGDMASRPNFGLNELDFVFSTLVVGSILNFTLMYLL 180

Query: 181 APTAAAGVAAQRLPSIFASCPTSHMFEPGAFTLLDRVGTFVYKGTVFAAVGLAAGLVGTA 240
           APTA+AGVAA++LP+IF SCPTSHMFEPGAFT+L+R+GT VYKGTVFA VGLAAGLVGTA
Sbjct: 181 APTASAGVAAKQLPAIFGSCPTSHMFEPGAFTVLERLGTLVYKGTVFATVGLAAGLVGTA 240

Query: 241 LSNGLIMLRKKMDPGFETPNKAPPTLLNAMTWAIHMGVSSNLRYQTLNGVEYVLAKGLPP 300
           LSNGLI LRKKMDP FETPNKAPPTLLNAMTWAIHMGVSSNLRYQ+LNG+E+VLAKGLPP
Sbjct: 241 LSNGLIKLRKKMDPEFETPNKAPPTLLNAMTWAIHMGVSSNLRYQSLNGLEFVLAKGLPP 300

Query: 301 LAFKSSVVVLRCLNNVLGGMSFVVLARMTGSQSVEGPKTAGVELDSGDEKEKLLEGDKEE 360
           LAFKSSVVVLRCLNN+LGGMSFV+LARMTGSQSVE  K A ++LD+ D KEKLLEGDK+E
Sbjct: 301 LAFKSSVVVLRCLNNILGGMSFVILARMTGSQSVEDAKPAALDLDATDTKEKLLEGDKDE 360

Query: 361 ELR 364
           EL+
Sbjct: 361 ELK 360

[Close]
BLAST of CsGy4G016090 vs. NCBI nr
Match: XP_023517477.1 (protein RETICULATA-RELATED 3, chloroplastic-like [Cucurbita pepo subsp. pepo] >XP_023517478.1 protein RETICULATA-RELATED 3, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 534.3 bits (1375), Expect = 3.4e-148
Identity = 308/363 (84.85%), Postives = 333/363 (91.74%), Query Frame = 0 

Query: 1   MAAMAQLHCSVRPRQYYSVPNNHGFNNTPAFSFLSNSSAVESRSRSLSLSLFNADLTRPS 60
           MA+MAQLHCSVRPR YY+VP +H +N+ PAFSFLSNSSAVESRSR  SLSLFNADLTR  
Sbjct: 1   MASMAQLHCSVRPRDYYNVPRSHAYNDPPAFSFLSNSSAVESRSR--SLSLFNADLTRSR 60

Query: 61  FLAKSELSLAGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSFGVLGLFLKGWRS 120
           FL KSELSLA GXXXXXXXXXXXXXXXXXXXXXXXXXX        SFGV GLFL+GWR+
Sbjct: 61  FLVKSELSLA-GXXXXXXXXXXXXXXXXXXXXXXXXXXRADGDDSSSFGVFGLFLQGWRT 120

Query: 121 RVAADPQFPFKVLMEELVGVSSCVLGDMASRPNFGLNELDFVFSTLVVGSILNFTLMYLL 180
           RVAADPQFPFKVLMEELVGVS+CVLGDMASRPNFGLNELDFVFSTLVVGSILNFTLMYLL
Sbjct: 121 RVAADPQFPFKVLMEELVGVSACVLGDMASRPNFGLNELDFVFSTLVVGSILNFTLMYLL 180

Query: 181 APTAAAGVAAQRLPSIFASCPTSHMFEPGAFTLLDRVGTFVYKGTVFAAVGLAAGLVGTA 240
           APTA+AGVAA++LP+IF SCPTSHMFEPGAFT+L+R+GT VYKGTVFA VGLAAGLVGTA
Sbjct: 181 APTASAGVAAKQLPAIFGSCPTSHMFEPGAFTVLERLGTLVYKGTVFATVGLAAGLVGTA 240

Query: 241 LSNGLIMLRKKMDPGFETPNKAPPTLLNAMTWAIHMGVSSNLRYQTLNGVEYVLAKGLPP 300
           LSNGLI LRKKMDP FETPNKAPPTLLNAMTWAIHMGVSSNLRYQ+LNG+E+VLAKGLPP
Sbjct: 241 LSNGLIKLRKKMDPEFETPNKAPPTLLNAMTWAIHMGVSSNLRYQSLNGLEFVLAKGLPP 300

Query: 301 LAFKSSVVVLRCLNNVLGGMSFVVLARMTGSQSVEGPKTAGVELDSGDEKEKLLEGDKEE 360
           LAFKSSVVVLRCLNN+LGGMSFV+LARMTGSQSVE  K A ++LD+ D KEKLLEGDK+E
Sbjct: 301 LAFKSSVVVLRCLNNILGGMSFVILARMTGSQSVEEAKPAALDLDAADTKEKLLEGDKDE 360

Query: 361 ELR 364
           EL+
Sbjct: 361 ELK 360

[Close]
BLAST of CsGy4G016090 vs. TAIR10
Match: AT3G08640.1 (Protein of unknown function (DUF3411))

HSP 1 Score: 372.1 bits (954), Expect = 4.0e-103
Identity = 180/228 (78.95%), Postives = 208/228 (91.23%), Query Frame = 0 

Query: 108 FGVLGLFLKGWRSRVAADPQFPFKVLMEELVGVSSCVLGDMASRPNFGLNELDFVFSTLV 167
           +G +GLF++GWRSRVAADPQFPFKVLMEE+VG+S+CVLGDMASRPNFGLNELDFVFSTLV
Sbjct: 98  WGPIGLFIQGWRSRVAADPQFPFKVLMEEIVGLSACVLGDMASRPNFGLNELDFVFSTLV 157

Query: 168 VGSILNFTLMYLLAPTAAAGVAAQRLPSIFASCPTSHMFEPGAFTLLDRVGTFVYKGTVF 227
           VGSILNF LMY+LAPTAA   ++Q LP IF +CP+SHMFE G+FT+++R GT VYKG VF
Sbjct: 158 VGSILNFVLMYMLAPTAATLGSSQTLPGIFRNCPSSHMFEQGSFTVMNRFGTLVYKGMVF 217

Query: 228 AAVGLAAGLVGTALSNGLIMLRKKMDPGFETPNKAPPTLLNAMTWAIHMGVSSNLRYQTL 287
           A+VGLAAGLVGTA+SNGLIMLRKKMDP FETPNK PPT+LN++TWA HMGVS+N RYQTL
Sbjct: 218 ASVGLAAGLVGTAISNGLIMLRKKMDPSFETPNKPPPTVLNSLTWATHMGVSANARYQTL 277

Query: 288 NGVEYVLAKGLPPLAFKSSVVVLRCLNNVLGGMSFVVLARMTGSQSVE 336
           NG+E++LAK LPPL FK+SV+VLRC NNV GGMSFV+LARMTGSQSVE
Sbjct: 278 NGIEFLLAKVLPPLVFKTSVIVLRCANNVAGGMSFVLLARMTGSQSVE 325

[Close]
BLAST of CsGy4G016090 vs. TAIR10
Match: AT3G08630.1 (Protein of unknown function (DUF3411))

HSP 1 Score: 361.7 bits (927), Expect = 5.4e-100
Identity = 185/245 (75.51%), Postives = 209/245 (85.31%), Query Frame = 0 

Query: 108 FGVLGLFLKGWRSRVAADPQFPFKVLMEELVGVSSCVLGDMASRPNFGLNELDFVFSTLV 167
           +G LGLF++GWRSRVAAD QFPFKVLME LVGVS+ VLGDMASRPNFGLNELDFVFSTLV
Sbjct: 95  WGPLGLFIQGWRSRVAADSQFPFKVLMEMLVGVSANVLGDMASRPNFGLNELDFVFSTLV 154

Query: 168 VGSILNFTLMYLLAPTAAAGVAAQRLPSIFASCPTSHMFEPGAFTLLDRVGTFVYKGTVF 227
           VGSILNFTLMYLLAP+A +  ++  LP IF SCP+SHMFE G FTL++R GT VYKG VF
Sbjct: 155 VGSILNFTLMYLLAPSAISHGSSNLLPGIFRSCPSSHMFEQGNFTLMNRFGTLVYKGMVF 214

Query: 228 AAVGLAAGLVGTALSNGLIMLRKKMDPGFETPNKAPPTLLNAMTWAIHMGVSSNLRYQTL 287
           A VGLAAGLVGTA+SNGLIMLRKK+DP FETPNK PPTLLN++TWA HMGVS+N+RYQTL
Sbjct: 215 ATVGLAAGLVGTAISNGLIMLRKKIDPSFETPNKPPPTLLNSLTWATHMGVSANVRYQTL 274

Query: 288 NGVEYVLAKGLPPLAFKSSVVVLRCLNNVLGGMSFVVLARMTGSQSVEGPKTAGVELDSG 347
           NG E++L K LPPL FK+SV+ LR +NNVLGGMSFV LARMTGSQSVE  K   +E+   
Sbjct: 275 NGAEFLLEKSLPPLVFKTSVIALRVVNNVLGGMSFVTLARMTGSQSVEEEKK--IEMSEI 334

Query: 348 DEKEK 353
            EKEK
Sbjct: 335 SEKEK 337

[Close]
BLAST of CsGy4G016090 vs. TAIR10
Match: AT2G37860.3 (Protein of unknown function (DUF3411))

HSP 1 Score: 120.6 bits (301), Expect = 2.1e-27
Identity = 84/244 (34.43%), Postives = 129/244 (52.87%), Query Frame = 0 

Query: 107 SFGVLGLFLKGW---RSRVAADPQFPFKVLMEELVGVSSCVLGDMASRPNFGLNELDFVF 166
           S G+LG  ++ W   R+R+ ADP F FK+  E ++      + ++  R      E +   
Sbjct: 192 SAGLLGFAIRSWAMLRNRMLADPSFLFKIGAEIVIDSCCATVAEVQKRGKDFWAEFELYV 251

Query: 167 STLVVGSILNFTLMYLLAPTAAAGVAAQ------RLPSIFASCPTSHMFE---PGA-FTL 226
           + L+VG+++N  L+ +LAP    G  +       R+   + + P+S +FE   PG  F+ 
Sbjct: 252 ADLLVGTVVNIALVGMLAPYVRFGQPSASPGFLGRMVFAYNALPSS-VFEAERPGCRFSA 311

Query: 227 LDRVGTFVYKGTVFAAVGLAAGLVGTALSNGLIMLRKKMDPGFETPNKAPPTLLNAMTWA 286
             R+ T+ YKG ++ AVG   G+VG  ++N LIM  K+     E     PP + +A  W 
Sbjct: 312 QQRLATYFYKGIMYGAVGFGCGIVGQGIAN-LIMTAKRNINKSEENIPVPPLIKSAALWG 371

Query: 287 IHMGVSSNLRYQTLNGVEYVL-----AKGLPPLAFKSSVVVLRCLNNVLGGMSFVVLARM 333
           + + VSSN RYQ +NG+E V+     AK  PP A   +V V R  NN+ GGM FV  AR+
Sbjct: 372 VFLSVSSNTRYQIINGLERVVEASPFAKKFPPAAMAFTVGV-RLANNIYGGMQFVDWARL 431

[Close]
BLAST of CsGy4G016090 vs. TAIR10
Match: AT5G22790.1 (reticulata-related 1)

HSP 1 Score: 114.8 bits (286), Expect = 1.2e-25
Identity = 82/230 (35.65%), Postives = 122/230 (53.04%), Query Frame = 0 

Query: 119 RSRVAADPQFPFKVLMEELVGVSSCVLGDMASRPNFGLNELDFVFSTLVVGSILNFTLMY 178
           R+R+ ADP F FKV  E  +        ++  R     +E +   + L+VG +++  L+ 
Sbjct: 207 RNRMLADPSFLFKVGTEVAIDSCCATFAEVQKRGEDFWSEFELYAADLLVGLVVDVALVG 266

Query: 179 LLAPTAAAGVAAQRLPSIF-------ASCPTSHMFE---PGA-FTLLDRVGTFVYKGTVF 238
           LLAP A  G  +     +F       AS P+S +FE   PG  F++  R+ TF YKG ++
Sbjct: 267 LLAPYARIGKPSVASTGLFKDLKRACASLPSS-VFEAERPGCKFSVNQRIATFFYKGLLY 326

Query: 239 AAVGLAAGLVGTALSNGLIMLRKKMDPGFETPNKAPPTLLNAMTWAIHMGVSSNLRYQTL 298
            +VG   GL+G  ++N LIM  K+     E     PP   +A  W + +G+SSN RYQ +
Sbjct: 327 GSVGFGCGLIGQGIAN-LIMTAKRSVKKSEEDVPIPPLFESAALWGVFLGLSSNARYQII 386

Query: 299 NGVEYVL-----AKGLPPLAFKSSVVVLRCLNNVLGGMSFVVLARMTGSQ 333
           NG+E V+     AK +P +A   +V V R  NNV GGM FV  A+++G Q
Sbjct: 387 NGLERVVEGSTAAKRIPVVAMAFTVGV-RFANNVYGGMQFVDWAKLSGVQ 433

[Close]
BLAST of CsGy4G016090 vs. TAIR10
Match: AT5G12470.1 (Protein of unknown function (DUF3411))

HSP 1 Score: 103.2 bits (256), Expect = 3.5e-22
Identity = 74/229 (32.31%), Postives = 113/229 (49.34%), Query Frame = 0 

Query: 117 GWRSRVAADPQFPFKVLMEELVGVSSCVLGDMASRPNFGLNELDFVFSTLVVGSILNFTL 176
           G+R R+ AD  F  K+ ME  VG+ +    +   R     NEL+ VF+ + +  I +F L
Sbjct: 157 GFRERLLADDLFMAKLAMECGVGIFTKTAAEYERRRENFFNELEVVFADVAMAIIADFML 216

Query: 177 MYLLAPTAA----AGVAAQRLPSIFASCPTSHM---FEPGAFTLLDRVGTFVYKGTVFAA 236
           +YL APT +      + A  +   F +CP +         ++TLL R+G     G    A
Sbjct: 217 VYLPAPTVSLRPPLALTAGGISKFFHNCPDNAFQVALSGTSYTLLQRLGAITRNGAKLFA 276

Query: 237 VGLAAGLVGTALSNGLIMLRKKMDPGFETPNKAPPTLLNAMTWAIHMGVSSNLRYQTLNG 296
           VG  + LVGTA++N  I  RK +D   E   +  P +  ++ + ++M VSSNLRYQ + G
Sbjct: 277 VGTTSSLVGTAITNAFIKARKAVDQNSEGEVETVPIVSTSVAYGVYMAVSSNLRYQIVAG 336

Query: 297 VEYVLAKGLPP------LAFKSSVVVLRCLNNVLGGMSFVVLARMTGSQ 333
           V  +  + L P      LA  +    +R  N  LG + +V  AR+ G Q
Sbjct: 337 V--IEQRLLEPMLHQHKLALSALCFAVRTGNTFLGSLLWVDYARLIGIQ 383

[Close]
BLAST of CsGy4G016090 vs. Swiss-Prot
Match: sp|Q9C9Z2|RER3_ARATH (Protein RETICULATA-RELATED 3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RER3 PE=1 SV=1)

HSP 1 Score: 372.1 bits (954), Expect = 7.2e-102
Identity = 180/228 (78.95%), Postives = 208/228 (91.23%), Query Frame = 0 

Query: 108 FGVLGLFLKGWRSRVAADPQFPFKVLMEELVGVSSCVLGDMASRPNFGLNELDFVFSTLV 167
           +G +GLF++GWRSRVAADPQFPFKVLMEE+VG+S+CVLGDMASRPNFGLNELDFVFSTLV
Sbjct: 98  WGPIGLFIQGWRSRVAADPQFPFKVLMEEIVGLSACVLGDMASRPNFGLNELDFVFSTLV 157

Query: 168 VGSILNFTLMYLLAPTAAAGVAAQRLPSIFASCPTSHMFEPGAFTLLDRVGTFVYKGTVF 227
           VGSILNF LMY+LAPTAA   ++Q LP IF +CP+SHMFE G+FT+++R GT VYKG VF
Sbjct: 158 VGSILNFVLMYMLAPTAATLGSSQTLPGIFRNCPSSHMFEQGSFTVMNRFGTLVYKGMVF 217

Query: 228 AAVGLAAGLVGTALSNGLIMLRKKMDPGFETPNKAPPTLLNAMTWAIHMGVSSNLRYQTL 287
           A+VGLAAGLVGTA+SNGLIMLRKKMDP FETPNK PPT+LN++TWA HMGVS+N RYQTL
Sbjct: 218 ASVGLAAGLVGTAISNGLIMLRKKMDPSFETPNKPPPTVLNSLTWATHMGVSANARYQTL 277

Query: 288 NGVEYVLAKGLPPLAFKSSVVVLRCLNNVLGGMSFVVLARMTGSQSVE 336
           NG+E++LAK LPPL FK+SV+VLRC NNV GGMSFV+LARMTGSQSVE
Sbjct: 278 NGIEFLLAKVLPPLVFKTSVIVLRCANNVAGGMSFVLLARMTGSQSVE 325

[Close]
BLAST of CsGy4G016090 vs. Swiss-Prot
Match: sp|Q9C9Z3|RER2_ARATH (Protein RETICULATA-RELATED 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RER2 PE=2 SV=1)

HSP 1 Score: 361.7 bits (927), Expect = 9.8e-99
Identity = 185/245 (75.51%), Postives = 209/245 (85.31%), Query Frame = 0 

Query: 108 FGVLGLFLKGWRSRVAADPQFPFKVLMEELVGVSSCVLGDMASRPNFGLNELDFVFSTLV 167
           +G LGLF++GWRSRVAAD QFPFKVLME LVGVS+ VLGDMASRPNFGLNELDFVFSTLV
Sbjct: 95  WGPLGLFIQGWRSRVAADSQFPFKVLMEMLVGVSANVLGDMASRPNFGLNELDFVFSTLV 154

Query: 168 VGSILNFTLMYLLAPTAAAGVAAQRLPSIFASCPTSHMFEPGAFTLLDRVGTFVYKGTVF 227
           VGSILNFTLMYLLAP+A +  ++  LP IF SCP+SHMFE G FTL++R GT VYKG VF
Sbjct: 155 VGSILNFTLMYLLAPSAISHGSSNLLPGIFRSCPSSHMFEQGNFTLMNRFGTLVYKGMVF 214

Query: 228 AAVGLAAGLVGTALSNGLIMLRKKMDPGFETPNKAPPTLLNAMTWAIHMGVSSNLRYQTL 287
           A VGLAAGLVGTA+SNGLIMLRKK+DP FETPNK PPTLLN++TWA HMGVS+N+RYQTL
Sbjct: 215 ATVGLAAGLVGTAISNGLIMLRKKIDPSFETPNKPPPTLLNSLTWATHMGVSANVRYQTL 274

Query: 288 NGVEYVLAKGLPPLAFKSSVVVLRCLNNVLGGMSFVVLARMTGSQSVEGPKTAGVELDSG 347
           NG E++L K LPPL FK+SV+ LR +NNVLGGMSFV LARMTGSQSVE  K   +E+   
Sbjct: 275 NGAEFLLEKSLPPLVFKTSVIALRVVNNVLGGMSFVTLARMTGSQSVEEEKK--IEMSEI 334

Query: 348 DEKEK 353
            EKEK
Sbjct: 335 SEKEK 337

[Close]
BLAST of CsGy4G016090 vs. Swiss-Prot
Match: sp|B9DFK5|RETIC_ARATH (Protein RETICULATA, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RE PE=1 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 3.8e-26
Identity = 84/244 (34.43%), Postives = 129/244 (52.87%), Query Frame = 0 

Query: 107 SFGVLGLFLKGW---RSRVAADPQFPFKVLMEELVGVSSCVLGDMASRPNFGLNELDFVF 166
           S G+LG  ++ W   R+R+ ADP F FK+  E ++      + ++  R      E +   
Sbjct: 192 SAGLLGFAIRSWAMLRNRMLADPSFLFKIGAEIVIDSCCATVAEVQKRGKDFWAEFELYV 251

Query: 167 STLVVGSILNFTLMYLLAPTAAAGVAAQ------RLPSIFASCPTSHMFE---PGA-FTL 226
           + L+VG+++N  L+ +LAP    G  +       R+   + + P+S +FE   PG  F+ 
Sbjct: 252 ADLLVGTVVNIALVGMLAPYVRFGQPSASPGFLGRMVFAYNALPSS-VFEAERPGCRFSA 311

Query: 227 LDRVGTFVYKGTVFAAVGLAAGLVGTALSNGLIMLRKKMDPGFETPNKAPPTLLNAMTWA 286
             R+ T+ YKG ++ AVG   G+VG  ++N LIM  K+     E     PP + +A  W 
Sbjct: 312 QQRLATYFYKGIMYGAVGFGCGIVGQGIAN-LIMTAKRNINKSEENIPVPPLIKSAALWG 371

Query: 287 IHMGVSSNLRYQTLNGVEYVL-----AKGLPPLAFKSSVVVLRCLNNVLGGMSFVVLARM 333
           + + VSSN RYQ +NG+E V+     AK  PP A   +V V R  NN+ GGM FV  AR+
Sbjct: 372 VFLSVSSNTRYQIINGLERVVEASPFAKKFPPAAMAFTVGV-RLANNIYGGMQFVDWARL 431

[Close]
BLAST of CsGy4G016090 vs. Swiss-Prot
Match: sp|Q9FGP9|RER1_ARATH (Protein RETICULATA-RELATED 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RER1 PE=1 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 2.1e-24
Identity = 82/230 (35.65%), Postives = 122/230 (53.04%), Query Frame = 0 

Query: 119 RSRVAADPQFPFKVLMEELVGVSSCVLGDMASRPNFGLNELDFVFSTLVVGSILNFTLMY 178
           R+R+ ADP F FKV  E  +        ++  R     +E +   + L+VG +++  L+ 
Sbjct: 207 RNRMLADPSFLFKVGTEVAIDSCCATFAEVQKRGEDFWSEFELYAADLLVGLVVDVALVG 266

Query: 179 LLAPTAAAGVAAQRLPSIF-------ASCPTSHMFE---PGA-FTLLDRVGTFVYKGTVF 238
           LLAP A  G  +     +F       AS P+S +FE   PG  F++  R+ TF YKG ++
Sbjct: 267 LLAPYARIGKPSVASTGLFKDLKRACASLPSS-VFEAERPGCKFSVNQRIATFFYKGLLY 326

Query: 239 AAVGLAAGLVGTALSNGLIMLRKKMDPGFETPNKAPPTLLNAMTWAIHMGVSSNLRYQTL 298
            +VG   GL+G  ++N LIM  K+     E     PP   +A  W + +G+SSN RYQ +
Sbjct: 327 GSVGFGCGLIGQGIAN-LIMTAKRSVKKSEEDVPIPPLFESAALWGVFLGLSSNARYQII 386

Query: 299 NGVEYVL-----AKGLPPLAFKSSVVVLRCLNNVLGGMSFVVLARMTGSQ 333
           NG+E V+     AK +P +A   +V V R  NNV GGM FV  A+++G Q
Sbjct: 387 NGLERVVEGSTAAKRIPVVAMAFTVGV-RFANNVYGGMQFVDWAKLSGVQ 433

[Close]
BLAST of CsGy4G016090 vs. Swiss-Prot
Match: sp|Q94CJ5|RER4_ARATH (Protein RETICULATA-RELATED 4, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RER4 PE=2 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 6.3e-21
Identity = 74/229 (32.31%), Postives = 113/229 (49.34%), Query Frame = 0 

Query: 117 GWRSRVAADPQFPFKVLMEELVGVSSCVLGDMASRPNFGLNELDFVFSTLVVGSILNFTL 176
           G+R R+ AD  F  K+ ME  VG+ +    +   R     NEL+ VF+ + +  I +F L
Sbjct: 157 GFRERLLADDLFMAKLAMECGVGIFTKTAAEYERRRENFFNELEVVFADVAMAIIADFML 216

Query: 177 MYLLAPTAA----AGVAAQRLPSIFASCPTSHM---FEPGAFTLLDRVGTFVYKGTVFAA 236
           +YL APT +      + A  +   F +CP +         ++TLL R+G     G    A
Sbjct: 217 VYLPAPTVSLRPPLALTAGGISKFFHNCPDNAFQVALSGTSYTLLQRLGAITRNGAKLFA 276

Query: 237 VGLAAGLVGTALSNGLIMLRKKMDPGFETPNKAPPTLLNAMTWAIHMGVSSNLRYQTLNG 296
           VG  + LVGTA++N  I  RK +D   E   +  P +  ++ + ++M VSSNLRYQ + G
Sbjct: 277 VGTTSSLVGTAITNAFIKARKAVDQNSEGEVETVPIVSTSVAYGVYMAVSSNLRYQIVAG 336

Query: 297 VEYVLAKGLPP------LAFKSSVVVLRCLNNVLGGMSFVVLARMTGSQ 333
           V  +  + L P      LA  +    +R  N  LG + +V  AR+ G Q
Sbjct: 337 V--IEQRLLEPMLHQHKLALSALCFAVRTGNTFLGSLLWVDYARLIGIQ 383

[Close]
BLAST of CsGy4G016090 vs. TrEMBL
Match: tr|A0A0A0L080|A0A0A0L080_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G337260 PE=4 SV=1)

HSP 1 Score: 637.5 bits (1643), Expect = 1.9e-179
Identity = 370/370 (100.00%), Postives = 370/370 (100.00%), Query Frame = 0 

Query: 1   MAAMAQLHCSVRPRQYYSVPNNHGFNNTPAFSFLSNSSAVESRSRSLSLSLFNADLTRPS 60
           MAAMAQLHCSVRPRQYYSVPNNHGFNNTPAFSFLSNSSAVESRSRSLSLSLFNADLTRPS
Sbjct: 1   MAAMAQLHCSVRPRQYYSVPNNHGFNNTPAFSFLSNSSAVESRSRSLSLSLFNADLTRPS 60

Query: 61  FLAKSELSLAGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSFGVLGLFLKGWRS 120
           FLAKSELSLAGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSFGVLGLFLKGWRS
Sbjct: 61  FLAKSELSLAGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSFGVLGLFLKGWRS 120

Query: 121 RVAADPQFPFKVLMEELVGVSSCVLGDMASRPNFGLNELDFVFSTLVVGSILNFTLMYLL 180
           RVAADPQFPFKVLMEELVGVSSCVLGDMASRPNFGLNELDFVFSTLVVGSILNFTLMYLL
Sbjct: 121 RVAADPQFPFKVLMEELVGVSSCVLGDMASRPNFGLNELDFVFSTLVVGSILNFTLMYLL 180

Query: 181 APTAAAGVAAQRLPSIFASCPTSHMFEPGAFTLLDRVGTFVYKGTVFAAVGLAAGLVGTA 240
           APTAAAGVAAQRLPSIFASCPTSHMFEPGAFTLLDRVGTFVYKGTVFAAVGLAAGLVGTA
Sbjct: 181 APTAAAGVAAQRLPSIFASCPTSHMFEPGAFTLLDRVGTFVYKGTVFAAVGLAAGLVGTA 240

Query: 241 LSNGLIMLRKKMDPGFETPNKAPPTLLNAMTWAIHMGVSSNLRYQTLNGVEYVLAKGLPP 300
           LSNGLIMLRKKMDPGFETPNKAPPTLLNAMTWAIHMGVSSNLRYQTLNGVEYVLAKGLPP
Sbjct: 241 LSNGLIMLRKKMDPGFETPNKAPPTLLNAMTWAIHMGVSSNLRYQTLNGVEYVLAKGLPP 300

Query: 301 LAFKSSVVVLRCLNNVLGGMSFVVLARMTGSQSVEGPKTAGVELDSGDEKEKLLEGDKEE 360
           LAFKSSVVVLRCLNNVLGGMSFVVLARMTGSQSVEGPKTAGVELDSGDEKEKLLEGDKEE
Sbjct: 301 LAFKSSVVVLRCLNNVLGGMSFVVLARMTGSQSVEGPKTAGVELDSGDEKEKLLEGDKEE 360

Query: 361 ELRSNQTACK 371
           ELRSNQTACK
Sbjct: 361 ELRSNQTACK 370

[Close]
BLAST of CsGy4G016090 vs. TrEMBL
Match: tr|A0A1S3CIX7|A0A1S3CIX7_CUCME (protein RETICULATA-RELATED 3, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103501484 PE=4 SV=1)

HSP 1 Score: 621.7 bits (1602), Expect = 1.1e-174
Identity = 360/370 (97.30%), Postives = 366/370 (98.92%), Query Frame = 0 

Query: 1   MAAMAQLHCSVRPRQYYSVPNNHGFNNTPAFSFLSNSSAVESRSRSLSLSLFNADLTRPS 60
           MAAMAQLHCSVRPRQYY+VPNNHGFNNTPAFSFLSNSS VESRSRSLSLSLFNADLTR S
Sbjct: 1   MAAMAQLHCSVRPRQYYNVPNNHGFNNTPAFSFLSNSSVVESRSRSLSLSLFNADLTRRS 60

Query: 61  FLAKSELSLAGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSFGVLGLFLKGWRS 120
           +LAKSELSLAGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSFGVLGLFLKGWRS
Sbjct: 61  YLAKSELSLAGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSFGVLGLFLKGWRS 120

Query: 121 RVAADPQFPFKVLMEELVGVSSCVLGDMASRPNFGLNELDFVFSTLVVGSILNFTLMYLL 180
           RVAADPQFPFKVLMEELVGVSSCVLGDMASRPNFGLNELDFVFSTLVVGSILNFTLMYLL
Sbjct: 121 RVAADPQFPFKVLMEELVGVSSCVLGDMASRPNFGLNELDFVFSTLVVGSILNFTLMYLL 180

Query: 181 APTAAAGVAAQRLPSIFASCPTSHMFEPGAFTLLDRVGTFVYKGTVFAAVGLAAGLVGTA 240
           APTAAAG  A++LPSIFASCPTSHMFEPGAFTLLDR+GTFVYKGTVFAAVGLAAGLVGTA
Sbjct: 181 APTAAAGAVAKQLPSIFASCPTSHMFEPGAFTLLDRLGTFVYKGTVFAAVGLAAGLVGTA 240

Query: 241 LSNGLIMLRKKMDPGFETPNKAPPTLLNAMTWAIHMGVSSNLRYQTLNGVEYVLAKGLPP 300
           LSNGLIMLRKKMDPGFETPNKAPPTLLNAMTWAIHMGVSSNLRYQTLNGVEYVLAKGLPP
Sbjct: 241 LSNGLIMLRKKMDPGFETPNKAPPTLLNAMTWAIHMGVSSNLRYQTLNGVEYVLAKGLPP 300

Query: 301 LAFKSSVVVLRCLNNVLGGMSFVVLARMTGSQSVEGPKTAGVELDSGDEKEKLLEGDKEE 360
           LAFKSSVVVLRCLNNVLGGMSFVVLAR+TGSQSVEGPKTAGVELDSGDEKEKLLEGDKEE
Sbjct: 301 LAFKSSVVVLRCLNNVLGGMSFVVLARLTGSQSVEGPKTAGVELDSGDEKEKLLEGDKEE 360

Query: 361 ELRSNQTACK 371
           ELRSNQTACK
Sbjct: 361 ELRSNQTACK 370

[Close]
BLAST of CsGy4G016090 vs. TrEMBL
Match: tr|A0A2I4E4T7|A0A2I4E4T7_9ROSI (protein RETICULATA-RELATED 3, chloroplastic-like OS=Juglans regia OX=51240 GN=LOC108986280 PE=4 SV=1)

HSP 1 Score: 422.5 bits (1085), Expect = 9.5e-115
Identity = 270/379 (71.24%), Postives = 303/379 (79.95%), Query Frame = 0 

Query: 1   MAAMAQLH----CSVRPRQYY---SVPNNHGFNNTPAFSFLSNSSAVESRSRSLSLSLFN 60
           +  MAQL      S  P QY    +V ++H F  T + SF  +SS+    S++ SL   +
Sbjct: 2   VVGMAQLQLRYSASSIPGQYQYCRNVSDDHRFGAT-SISFPFSSSS----SQNCSLHPIH 61

Query: 61  ADLTRPSFL-AKSELSLA-GGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSFGVL 120
             L++P  L  KSEL  A GG       XXXXXXXXXXXXXXXXXXXXXXXXXXX FG+L
Sbjct: 62  PKLSKPYILGGKSELPFAGGGDRNNGVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXFGIL 121

Query: 121 GLFLKGWRSRVAADPQFPFKVLMEELVGVSSCVLGDMASRPNFGLNELDFVFSTLVVGSI 180
           GLFL GWRSRVAADPQFPFKVLMEELVGVS+CVLGDMASRPNFGLNELDFVFSTLVVGSI
Sbjct: 122 GLFLNGWRSRVAADPQFPFKVLMEELVGVSACVLGDMASRPNFGLNELDFVFSTLVVGSI 181

Query: 181 LNFTLMYLLAPTAAAGVAAQRLPSIFASCPTSHMFEPGAFTLLDRVGTFVYKGTVFAAVG 240
           LNFTLMYLLAPT +A  ++  LPSIFASCPTSHMFEPGA+T+ +R GTFVYKG VFAAVG
Sbjct: 182 LNFTLMYLLAPTLSA--SSPNLPSIFASCPTSHMFEPGAYTVFNRFGTFVYKGVVFAAVG 241

Query: 241 LAAGLVGTALSNGLIMLRKKMDPGFETPNKAPPTLLNAMTWAIHMGVSSNLRYQTLNGVE 300
            AAGLVGT LSNGLI LRKKMDP FETPNKAPPTLLN++TWA HMG+SSN RYQTLNG+E
Sbjct: 242 FAAGLVGTVLSNGLISLRKKMDPNFETPNKAPPTLLNSLTWAAHMGISSNFRYQTLNGIE 301

Query: 301 YVLAKGLPPLAFKSSVVVLRCLNNVLGGMSFVVLARMTGSQSVEGPKTAGVELDSGDEKE 360
           +VLAKGLPPLAFKSSVVVLRCLNNVLGGMSFV+LARMTGSQSVEG K    E+ S  EKE
Sbjct: 302 FVLAKGLPPLAFKSSVVVLRCLNNVLGGMSFVILARMTGSQSVEGAKPVAGEVGSVPEKE 361

Query: 361 KLLEGDKEEELRSNQTACK 371
           KL++G   E+++SN + CK
Sbjct: 362 KLIDG--AEQIQSNPSTCK 371

[Close]
BLAST of CsGy4G016090 vs. TrEMBL
Match: tr|A0A2N9FT80|A0A2N9FT80_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS18324 PE=4 SV=1)

HSP 1 Score: 417.2 bits (1071), Expect = 4.0e-113
Identity = 270/380 (71.05%), Postives = 307/380 (80.79%), Query Frame = 0 

Query: 1   MAAMAQLHCSVR-----PRQY--YSVPNNHGFNNT--PAFSFLSNSSAVE-SRSRSLSLS 60
           M ++AQL   +R     PRQY   +V +N+ FN     A SF S+SS+   S ++  SL+
Sbjct: 1   MGSIAQLQFQLRCSGNNPRQYRCNNVSDNNRFNTALPAAISFPSSSSSSSLSNNQKCSLN 60

Query: 61  LFNADLTRPSFLAKSELSLAGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSFGV 120
           L    L R     KSEL LAGG  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   FG+
Sbjct: 61  LTPNKLLR----GKSELPLAGG-GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSGFGI 120

Query: 121 LGLFLKGWRSRVAADPQFPFKVLMEELVGVSSCVLGDMASRPNFGLNELDFVFSTLVVGS 180
           LGLFL GWRSRVAADPQFPFKVLMEELVGV+SCV+GDMASRPNFGLNELDFVFSTLVVGS
Sbjct: 121 LGLFLNGWRSRVAADPQFPFKVLMEELVGVTSCVIGDMASRPNFGLNELDFVFSTLVVGS 180

Query: 181 ILNFTLMYLLAPTAAAGVAAQRLPSIFASCPTSHMFEPGAFTLLDRVGTFVYKGTVFAAV 240
           ILNFTLMYLLAPT +A + +  LP+IFA+CP SHMFEPGA+++ +R GTFVYKG VFAAV
Sbjct: 181 ILNFTLMYLLAPTLSASLPS--LPAIFANCPASHMFEPGAYSVFNRFGTFVYKGAVFAAV 240

Query: 241 GLAAGLVGTALSNGLIMLRKKMDPGFETPNKAPPTLLNAMTWAIHMGVSSNLRYQTLNGV 300
           G AAGLVGT LSNGL+ +RKKMDP FETPNKAPPT+LNA+TWA+HMG+SSN RYQTLNG+
Sbjct: 241 GFAAGLVGTVLSNGLLSVRKKMDPDFETPNKAPPTILNALTWALHMGISSNFRYQTLNGI 300

Query: 301 EYVLAKGLPPLAFKSSVVVLRCLNNVLGGMSFVVLARMTGSQSVEGPKTAGVELDSGDEK 360
           E+VLAKGLPPLAFKSSVVVLRCLNNVLGGMSFVVLARMTGSQSV   K   VE+    EK
Sbjct: 301 EFVLAKGLPPLAFKSSVVVLRCLNNVLGGMSFVVLARMTGSQSVGEAKPVAVEVGLAAEK 360

Query: 361 EKLLEGDKEEELRSNQTACK 371
           EKL++G   E+L+SNQ+  K
Sbjct: 361 EKLIDGG--EDLQSNQSTYK 371

[Close]
BLAST of CsGy4G016090 vs. TrEMBL
Match: tr|A0A067JDE2|A0A067JDE2_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_00629 PE=4 SV=1)

HSP 1 Score: 416.8 bits (1070), Expect = 5.2e-113
Identity = 213/263 (80.99%), Postives = 238/263 (90.49%), Query Frame = 0 

Query: 108 FGVLGLFLKGWRSRVAADPQFPFKVLMEELVGVSSCVLGDMASRPNFGLNELDFVFSTLV 167
           FG+L LFL GWRSRVAADPQFPFKVLMEELVGVS+CVLGDMASRPNFGLNELDFVFSTLV
Sbjct: 99  FGILALFLNGWRSRVAADPQFPFKVLMEELVGVSACVLGDMASRPNFGLNELDFVFSTLV 158

Query: 168 VGSILNFTLMYLLAPTAAAGVAAQRLPSIFASCPTSHMFEPGAFTLLDRVGTFVYKGTVF 227
           VGSILNFTLMYLLAPTA+A  A+  LP+IFA+CPTSHMFEPGA+TL++R+GTFVYKGT+F
Sbjct: 159 VGSILNFTLMYLLAPTASASSAS--LPAIFANCPTSHMFEPGAYTLMNRLGTFVYKGTIF 218

Query: 228 AAVGLAAGLVGTALSNGLIMLRKKMDPGFETPNKAPPTLLNAMTWAIHMGVSSNLRYQTL 287
           AAVG AAGLVGTALSNGLI +RKKMDP FETPNKAPPT+LNA+TWA+HMG+SSNLRYQTL
Sbjct: 219 AAVGFAAGLVGTALSNGLISMRKKMDPTFETPNKAPPTVLNAVTWALHMGISSNLRYQTL 278

Query: 288 NGVEYVLAKGLPPLAFKSSVVVLRCLNNVLGGMSFVVLARMTGSQSVEGPKTAGVELDSG 347
           NG+E++LAKGLPPLAFKSSVVVLRCLNNV+GGMSFV+LAR+TGSQSV   K   VE   G
Sbjct: 279 NGIEFLLAKGLPPLAFKSSVVVLRCLNNVMGGMSFVILARLTGSQSVGEAKPVAVE---G 338

Query: 348 DEKEKLLEGDKEEELRSNQTACK 371
            EKEKLL+G   EE+R NQ+  K
Sbjct: 339 SEKEKLLDGG--EEMRGNQSTFK 354

The following BLAST results are available for this feature:
BLAST of CsGy4G016090 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004142670.12.8e-179100.00PREDICTED: uncharacterized protein LOC101209534 [Cucumis sativus] >KGN54469.1 hy... [more]
XP_008463291.11.6e-17497.30PREDICTED: protein RETICULATA-RELATED 3, chloroplastic [Cucumis melo] >XP_016903... [more]
XP_022156248.11.1e-15489.53protein RETICULATA-RELATED 3, chloroplastic [Momordica charantia][more]
XP_022966374.18.9e-14985.12protein RETICULATA-RELATED 3, chloroplastic [Cucurbita maxima][more]
XP_023517477.13.4e-14884.85protein RETICULATA-RELATED 3, chloroplastic-like [Cucurbita pepo subsp. pepo] >X... [more]
BLAST of CsGy4G016090 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G08640.14.0e-10378.95Protein of unknown function (DUF3411)[more]
AT3G08630.15.4e-10075.51Protein of unknown function (DUF3411)[more]
AT2G37860.32.1e-2734.43Protein of unknown function (DUF3411)[more]
AT5G22790.11.2e-2535.65reticulata-related 1[more]
AT5G12470.13.5e-2232.31Protein of unknown function (DUF3411)[more]
BLAST of CsGy4G016090 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9C9Z2|RER3_ARATH7.2e-10278.95Protein RETICULATA-RELATED 3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=R... [more]
sp|Q9C9Z3|RER2_ARATH9.8e-9975.51Protein RETICULATA-RELATED 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=R... [more]
sp|B9DFK5|RETIC_ARATH3.8e-2634.43Protein RETICULATA, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RE PE=1 SV=... [more]
sp|Q9FGP9|RER1_ARATH2.1e-2435.65Protein RETICULATA-RELATED 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=R... [more]
sp|Q94CJ5|RER4_ARATH6.3e-2132.31Protein RETICULATA-RELATED 4, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=R... [more]
BLAST of CsGy4G016090 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0L080|A0A0A0L080_CUCSA1.9e-179100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G337260 PE=4 SV=1[more]
tr|A0A1S3CIX7|A0A1S3CIX7_CUCME1.1e-17497.30protein RETICULATA-RELATED 3, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103501... [more]
tr|A0A2I4E4T7|A0A2I4E4T7_9ROSI9.5e-11571.24protein RETICULATA-RELATED 3, chloroplastic-like OS=Juglans regia OX=51240 GN=LO... [more]
tr|A0A2N9FT80|A0A2N9FT80_FAGSY4.0e-11371.05Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS18324 PE=4 SV=1[more]
tr|A0A067JDE2|A0A067JDE2_JATCU5.2e-11380.99Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_00629 PE=4 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR021825RETICULATA-related
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy4G016090.1CsGy4G016090.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR021825Protein RETICULATA-relatedPFAMPF11891RETICULATA-likecoord: 121..290
e-value: 1.9E-65
score: 219.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 342..370
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 333..370
NoneNo IPR availablePANTHERPTHR31620FAMILY NOT NAMEDcoord: 37..362
NoneNo IPR availablePANTHERPTHR31620:SF5PROTEIN RETICULATA-RELATED 2, CHLOROPLASTIC-RELATEDcoord: 37..362

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsGy4G016090Cla012049Watermelon (97103) v1cgybwmB314
CsGy4G016090Csa4G337260Cucumber (Chinese Long) v2cgybcuB167
CsGy4G016090MELO3C025256Melon (DHL92) v3.5.1cgybmeB284
CsGy4G016090CSPI04G16770Wild cucumber (PI 183967)cgybcpiB170
CsGy4G016090CmaCh07G012030Cucurbita maxima (Rimu)cgybcmaB567
CsGy4G016090CmoCh07G012460Cucurbita moschata (Rifu)cgybcmoB541
CsGy4G016090Lsi01G016330Bottle gourd (USVL1VR-Ls)cgyblsiB236
CsGy4G016090Cp4.1LG19g01750Cucurbita pepo (Zucchini)cgybcpeB520
CsGy4G016090MELO3C025256.2Melon (DHL92) v3.6.1cgybmedB284
CsGy4G016090CsaV3_4G027370Cucumber (Chinese Long) v3cgybcucB171
CsGy4G016090Cla97C04G072750Watermelon (97103) v2cgybwmbB282
CsGy4G016090Bhi03G001785Wax gourdcgybwgoB374
CsGy4G016090Carg12638Silver-seed gourdcarcgybB0298
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsGy4G016090Silver-seed gourdcarcgybB0019
CsGy4G016090Silver-seed gourdcarcgybB0626
CsGy4G016090Silver-seed gourdcarcgybB0985
CsGy4G016090Cucurbita maxima (Rimu)cgybcmaB533
CsGy4G016090Cucurbita maxima (Rimu)cgybcmaB550
CsGy4G016090Cucurbita maxima (Rimu)cgybcmaB561
CsGy4G016090Cucurbita moschata (Rifu)cgybcmoB507
CsGy4G016090Cucurbita moschata (Rifu)cgybcmoB525
CsGy4G016090Cucurbita moschata (Rifu)cgybcmoB536
CsGy4G016090Cucurbita pepo (Zucchini)cgybcpeB463
CsGy4G016090Cucurbita pepo (Zucchini)cgybcpeB514
CsGy4G016090Cucurbita pepo (Zucchini)cgybcpeB576
CsGy4G016090Watermelon (Charleston Gray)cgybwcgB282