CsGy4G015290 (gene) Cucumber (Gy14) v2

Overview
NameCsGy4G015290
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
DescriptionLate embryogenesis abundant protein B19.3
LocationChr4 : 20022894 .. 20023319 (-)
Genome Viewer
Gene Expression
   



Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCATCGCAACAGCAAAGATCGGCGCTGGACGCTAAGGCTAAGCAGGGTGAGACTGTGGTTCCTGGTGGAACTGGTGGCAAAAGCCTTGATGCTCAAGAACGCCTAGCCGAAGGTTCCTTTGTGAGCTTTAGTACTACATGTGTAAATTTTTGTTTATAATATGATCGAGTTTATTAATTGCTTTATCATGGTGAAGGCCGGAGCAAAGGCGGGCAAACAAGGAAAGAGCAACTGGGGCATGAAGGGTATCAAGAGCTAGGGCATCAAGGGGGAGAGGCAAGAAGGGAGCAAATGGGCCAAGAAGGCTACAAAGAGATGGGCCGGAAAGGAGGGCTGAGCACAATGGACAAGTCCGGTGGCGAGCGGGTGGAGGAGGAAGGAATCGAGATCGATGAGTCCAAGTTCACAAACAAGAACCGTTAA

mRNA sequence

ATGGCATCGCAACAGCAAAGATCGGCGCTGGACGCTAAGGCTAAGCAGGGTGAGACTGTGGTTCCTGGTGGAACTGGTGGCAAAAGCCTTGATGCTCAAGAACGCCTAGCCGAAGGCCGGAGCAAAGGCGGGCAAACAAGGAAAGAGCAACTGGGGCATGAAGGGTATCAAGAGCTAGGGCATCAAGGGGGAGAGGCAAGAAGGGAGCAAATGGGCCAAGAAGGCTACAAAGAGATGGGCCGGAAAGGAGGGCTGAGCACAATGGACAAGTCCGGTGGCGAGCGGGTGGAGGAGGAAGGAATCGAGATCGATGAGTCCAAGTTCACAAACAAGAACCGTTAA

Coding sequence (CDS)

ATGGCATCGCAACAGCAAAGATCGGCGCTGGACGCTAAGGCTAAGCAGGGTGAGACTGTGGTTCCTGGTGGAACTGGTGGCAAAAGCCTTGATGCTCAAGAACGCCTAGCCGAAGGCCGGAGCAAAGGCGGGCAAACAAGGAAAGAGCAACTGGGGCATGAAGGGTATCAAGAGCTAGGGCATCAAGGGGGAGAGGCAAGAAGGGAGCAAATGGGCCAAGAAGGCTACAAAGAGATGGGCCGGAAAGGAGGGCTGAGCACAATGGACAAGTCCGGTGGCGAGCGGGTGGAGGAGGAAGGAATCGAGATCGATGAGTCCAAGTTCACAAACAAGAACCGTTAA

Protein sequence

MASQQQRSALDAKAKQGETVVPGGTGGKSLDAQERLAEGRSKGGQTRKEQLGHEGYQELGHQGGEARREQMGQEGYKEMGRKGGLSTMDKSGGERVEEEGIEIDESKFTNKNR
Homology
[Close]
BLAST of CsGy4G015290 vs. NCBI nr
Match: XP_004148634.2 (PREDICTED: protein SLE1 [Cucumis sativus] >KGN54389.1 hypothetical protein Csa_4G311730 [Cucumis sativus])

HSP 1 Score: 55.5 bits (132), Expect = 1.4e-04
Identity = 28/28 (100.00%), Postives = 28/28 (100.00%), Query Frame = 0 

Query: 1  MASQQQRSALDAKAKQGETVVPGGTGGK 29
          MASQQQRSALDAKAKQGETVVPGGTGGK
Sbjct: 1  MASQQQRSALDAKAKQGETVVPGGTGGK 28

[Close]
BLAST of CsGy4G015290 vs. NCBI nr
Match: XP_008464211.1 (PREDICTED: protein SLE1 [Cucumis melo])

HSP 1 Score: 53.5 bits (127), Expect = 5.3e-04
Identity = 27/28 (96.43%), Postives = 27/28 (96.43%), Query Frame = 0 

Query: 1  MASQQQRSALDAKAKQGETVVPGGTGGK 29
          MASQQQRS LDAKAKQGETVVPGGTGGK
Sbjct: 1  MASQQQRSELDAKAKQGETVVPGGTGGK 28

[Close]
BLAST of CsGy4G015290 vs. TAIR10
Match: AT2G40170.1 (Stress induced protein)

HSP 1 Score: 45.1 bits (105), Expect = 3.4e-05
Identity = 21/28 (75.00%), Postives = 25/28 (89.29%), Query Frame = 0 

Query: 1  MASQQQRSALDAKAKQGETVVPGGTGGK 29
          MASQQ++  LD +AK+GETVVPGGTGGK
Sbjct: 1  MASQQEKKQLDERAKKGETVVPGGTGGK 28

[Close]
BLAST of CsGy4G015290 vs. Swiss-Prot
Match: sp|P17639|EMB1_DAUCA (Protein EMB-1 OS=Daucus carota OX=4039 GN=EMB-1 PE=1 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 1.2e-04
Identity = 22/28 (78.57%), Postives = 26/28 (92.86%), Query Frame = 0 

Query: 1  MASQQQRSALDAKAKQGETVVPGGTGGK 29
          MASQQ++  LDA+A+QGETVVPGGTGGK
Sbjct: 1  MASQQEKKELDARARQGETVVPGGTGGK 28

[Close]
BLAST of CsGy4G015290 vs. Swiss-Prot
Match: sp|Q02973|EM6_ARATH (Em-like protein GEA6 OS=Arabidopsis thaliana OX=3702 GN=EM6 PE=2 SV=1)

HSP 1 Score: 45.1 bits (105), Expect = 6.2e-04
Identity = 21/28 (75.00%), Postives = 25/28 (89.29%), Query Frame = 0 

Query: 1  MASQQQRSALDAKAKQGETVVPGGTGGK 29
          MASQQ++  LD +AK+GETVVPGGTGGK
Sbjct: 1  MASQQEKKQLDERAKKGETVVPGGTGGK 28

[Close]
BLAST of CsGy4G015290 vs. Swiss-Prot
Match: sp|Q5KTS7|EML_DAUCA (Carrot ABA-induced in somatic embryos 3 OS=Daucus carota OX=4039 GN=CAISE3 PE=2 SV=1)

HSP 1 Score: 45.1 bits (105), Expect = 6.2e-04
Identity = 21/27 (77.78%), Postives = 25/27 (92.59%), Query Frame = 0 

Query: 2  ASQQQRSALDAKAKQGETVVPGGTGGK 29
          + Q++RS LDA+AKQGETVVPGGTGGK
Sbjct: 3  SGQEKRSELDARAKQGETVVPGGTGGK 29

[Close]
BLAST of CsGy4G015290 vs. Swiss-Prot
Match: sp|P11573|SEEP_RAPSA (Late seed maturation protein P8B6 OS=Raphanus sativus OX=3726 PE=2 SV=1)

HSP 1 Score: 45.1 bits (105), Expect = 6.2e-04
Identity = 21/28 (75.00%), Postives = 25/28 (89.29%), Query Frame = 0 

Query: 1  MASQQQRSALDAKAKQGETVVPGGTGGK 29
          MASQQ++  LD +AK+GETVVPGGTGGK
Sbjct: 1  MASQQEKKQLDERAKKGETVVPGGTGGK 28

[Close]
BLAST of CsGy4G015290 vs. TrEMBL
Match: tr|A0A0A0KZY8|A0A0A0KZY8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G311730 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 9.3e-05
Identity = 28/28 (100.00%), Postives = 28/28 (100.00%), Query Frame = 0 

Query: 1  MASQQQRSALDAKAKQGETVVPGGTGGK 29
          MASQQQRSALDAKAKQGETVVPGGTGGK
Sbjct: 1  MASQQQRSALDAKAKQGETVVPGGTGGK 28

[Close]
BLAST of CsGy4G015290 vs. TrEMBL
Match: tr|A0A1S3CMG8|A0A1S3CMG8_CUCME (protein SLE1 OS=Cucumis melo OX=3656 GN=LOC103502145 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 3.5e-04
Identity = 27/28 (96.43%), Postives = 27/28 (96.43%), Query Frame = 0 

Query: 1  MASQQQRSALDAKAKQGETVVPGGTGGK 29
          MASQQQRS LDAKAKQGETVVPGGTGGK
Sbjct: 1  MASQQQRSELDAKAKQGETVVPGGTGGK 28

[Close]
BLAST of CsGy4G015290 vs. TrEMBL
Match: tr|A0A022QGU2|A0A022QGU2_ERYGU (Uncharacterized protein OS=Erythranthe guttata OX=4155 GN=MIMGU_mgv1a025087mg PE=4 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 7.8e-04
Identity = 26/28 (92.86%), Postives = 27/28 (96.43%), Query Frame = 0 

Query: 1  MASQQQRSALDAKAKQGETVVPGGTGGK 29
          MASQQ+RS LDAKAKQGETVVPGGTGGK
Sbjct: 1  MASQQERSELDAKAKQGETVVPGGTGGK 28

The following BLAST results are available for this feature:
BLAST of CsGy4G015290 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004148634.21.4e-04100.00PREDICTED: protein SLE1 [Cucumis sativus] >KGN54389.1 hypothetical protein Csa_4... [more]
XP_008464211.15.3e-0496.43PREDICTED: protein SLE1 [Cucumis melo][more]
BLAST of CsGy4G015290 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G40170.13.4e-0575.00Stress induced protein[more]
BLAST of CsGy4G015290 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|P17639|EMB1_DAUCA1.2e-0478.57Protein EMB-1 OS=Daucus carota OX=4039 GN=EMB-1 PE=1 SV=1[more]
sp|Q02973|EM6_ARATH6.2e-0475.00Em-like protein GEA6 OS=Arabidopsis thaliana OX=3702 GN=EM6 PE=2 SV=1[more]
sp|Q5KTS7|EML_DAUCA6.2e-0477.78Carrot ABA-induced in somatic embryos 3 OS=Daucus carota OX=4039 GN=CAISE3 PE=2 ... [more]
sp|P11573|SEEP_RAPSA6.2e-0475.00Late seed maturation protein P8B6 OS=Raphanus sativus OX=3726 PE=2 SV=1[more]
BLAST of CsGy4G015290 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KZY8|A0A0A0KZY8_CUCSA9.3e-05100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G311730 PE=4 SV=1[more]
tr|A0A1S3CMG8|A0A1S3CMG8_CUCME3.5e-0496.43protein SLE1 OS=Cucumis melo OX=3656 GN=LOC103502145 PE=4 SV=1[more]
tr|A0A022QGU2|A0A022QGU2_ERYGU7.8e-0492.86Uncharacterized protein OS=Erythranthe guttata OX=4155 GN=MIMGU_mgv1a025087mg PE... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR022377Sm_Hydphi_plant_seed_CS
IPR000389Small_hydrophilic_seed_prot
IPR038956LEA_5
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy4G015290.1CsGy4G015290.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR038956Late embryogenesis abundant protein, LEA_5 subgroupPFAMPF00477LEA_5coord: 2..108
e-value: 4.3E-55
score: 184.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 91..113
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..113
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 33..76
NoneNo IPR availablePANTHERPTHR34671:SF3EM-LIKE PROTEIN GEA1-RELATEDcoord: 62..111
NoneNo IPR availablePANTHERPTHR34671:SF3EM-LIKE PROTEIN GEA1-RELATEDcoord: 1..64
IPR000389Small hydrophilic plant seed proteinPANTHERPTHR34671FAMILY NOT NAMEDcoord: 62..111
coord: 1..64
IPR022377Small hydrophilic plant seed protein, conserved sitePROSITEPS00431SMALL_HYDR_PLANT_SEEDcoord: 17..25

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsGy4G015290Wax gourdcgybwgoB370
CsGy4G015290Wax gourdcgybwgoB374
CsGy4G015290Cucumber (Gy14) v2cgybcgybB083
CsGy4G015290Cucumber (Gy14) v2cgybcgybB130
CsGy4G015290Cucurbita maxima (Rimu)cgybcmaB488
CsGy4G015290Cucurbita maxima (Rimu)cgybcmaB490
CsGy4G015290Cucurbita maxima (Rimu)cgybcmaB509
CsGy4G015290Cucurbita maxima (Rimu)cgybcmaB533
CsGy4G015290Cucurbita maxima (Rimu)cgybcmaB550
CsGy4G015290Cucurbita maxima (Rimu)cgybcmaB561
CsGy4G015290Cucurbita maxima (Rimu)cgybcmaB562
CsGy4G015290Cucurbita maxima (Rimu)cgybcmaB566
CsGy4G015290Cucurbita moschata (Rifu)cgybcmoB458
CsGy4G015290Cucurbita moschata (Rifu)cgybcmoB461
CsGy4G015290Cucurbita moschata (Rifu)cgybcmoB480
CsGy4G015290Cucurbita moschata (Rifu)cgybcmoB507
CsGy4G015290Cucurbita moschata (Rifu)cgybcmoB525
CsGy4G015290Cucurbita moschata (Rifu)cgybcmoB536
CsGy4G015290Cucurbita moschata (Rifu)cgybcmoB537
CsGy4G015290Cucurbita pepo (Zucchini)cgybcpeB463
CsGy4G015290Cucurbita pepo (Zucchini)cgybcpeB483
CsGy4G015290Cucurbita pepo (Zucchini)cgybcpeB514
CsGy4G015290Cucurbita pepo (Zucchini)cgybcpeB532
CsGy4G015290Cucurbita pepo (Zucchini)cgybcpeB555
CsGy4G015290Cucurbita pepo (Zucchini)cgybcpeB576
CsGy4G015290Cucumber (Chinese Long) v2cgybcuB162
CsGy4G015290Cucumber (Chinese Long) v2cgybcuB167
CsGy4G015290Cucumber (Chinese Long) v2cgybcuB184
CsGy4G015290Bottle gourd (USVL1VR-Ls)cgyblsiB236
CsGy4G015290Bottle gourd (USVL1VR-Ls)cgyblsiB258
CsGy4G015290Bottle gourd (USVL1VR-Ls)cgyblsiB262
CsGy4G015290Melon (DHL92) v3.5.1cgybmeB244
CsGy4G015290Melon (DHL92) v3.5.1cgybmeB248
CsGy4G015290Melon (DHL92) v3.5.1cgybmeB284
CsGy4G015290Melon (DHL92) v3.6.1cgybmedB244
CsGy4G015290Melon (DHL92) v3.6.1cgybmedB246
CsGy4G015290Melon (DHL92) v3.6.1cgybmedB284
CsGy4G015290Watermelon (Charleston Gray)cgybwcgB252
CsGy4G015290Watermelon (Charleston Gray)cgybwcgB262
CsGy4G015290Watermelon (Charleston Gray)cgybwcgB282
CsGy4G015290Watermelon (97103) v1cgybwmB314
CsGy4G015290Watermelon (97103) v1cgybwmB270
CsGy4G015290Watermelon (97103) v1cgybwmB328
CsGy4G015290Wild cucumber (PI 183967)cgybcpiB165
CsGy4G015290Wild cucumber (PI 183967)cgybcpiB170
CsGy4G015290Wild cucumber (PI 183967)cgybcpiB187
CsGy4G015290Silver-seed gourdcarcgybB0172
CsGy4G015290Silver-seed gourdcarcgybB0277
CsGy4G015290Silver-seed gourdcarcgybB0561
CsGy4G015290Silver-seed gourdcarcgybB0581
CsGy4G015290Silver-seed gourdcarcgybB0985
CsGy4G015290Cucumber (Chinese Long) v3cgybcucB169
CsGy4G015290Cucumber (Chinese Long) v3cgybcucB171
CsGy4G015290Cucumber (Chinese Long) v3cgybcucB189
CsGy4G015290Watermelon (97103) v2cgybwmbB260
CsGy4G015290Watermelon (97103) v2cgybwmbB271
CsGy4G015290Watermelon (97103) v2cgybwmbB282