CsGy4G013350 (gene) Cucumber (Gy14) v2

NameCsGy4G013350
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
Description60S ribosomal protein L18-3
LocationChr4 : 18413469 .. 18414443 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTAATTTTAAATTAACTAAACTGAGTCGGGTAGTCCGGGCTAACTACCAAACGAAGAGGAATATTTGGGTTGGTCTGAAAATTGAGTTAACCGAGCCCACGAGGCTGAATTTGAGTTTCGAAAAGCCCATTTGTTGGTGTTGGGCTTGAAGAACTCTGAAGACCCGAGGGGTATTTTTCTCTTGAAAGTGCACAAGATCTGCTGACCCTTATTCCCTCCCTTTCTTCCTTTTTATCTCGTTCCTCTCTCCTGCTTCTCGCATTTCTCTTCCGGCCACCGCACGCTGCCCCTCCGATCCACCTTCCTTCGACGCCGCCCTCCTCAATATCACTTCACTGGAGAAGTCTCGCGGTGATTTTGCGCGGTCTGCTACCTCAACGCCGCGTTAAAACCACCGTTTCGACGCTGCTAATTTAAGCGAGTTTTTGGGGCGATCTTGTTCAGGTAACTCTGTTAGTTCATTGTTACAATTGCTTTTCAAGTAAGTGGCATTACTTATCGAAAGCCTTTGGCTTGGTTGGACACTTTTTTTTCTTCTTTTGGTATGTGTTCTGTGTTATGTGCCGTGAACATTGAATTTGTTTAATATGTGTATTTTGAATTTTGATTAATGGGGTGGTTGTGTTAATTATTTTACTTGGATGTAAAGAACGAGTGTTCTATGTGCTATGCGTTTTGAATTTGTTGATATGTGATCTGATTATGTGGCGTGGATGTCTGAATTACATTACTTGTTTGTGGTTTGAGCATCTTACGTTACATGCATGTAGATGATACCTTTTTTTTAGTTTTAAGTACATGGAAACCGGCGGCGGCGGCGGCTACTAAAACTTGGCATAGCAGGAGGTAAGAGTAAGAAGACCAAGAGGACTGCATCCAAATCTGATGATATCTACCTTAAGTTACTCGTCCAGCTTTACCGCTTCCTTGTCCGTCAGACTGGAAGCAATTTCGATGCTGTGATTCTCTAG

mRNA sequence

ATGACTAATTTTAAATTAACTAAACTGAGTCGGGTAGTCCGGGCTAACTACCAAACGAAGAGGAATATTTGGTGCACAAGATCTGCTGACCCTTATTCCCTCCCTTTCTTCCTTTTTATCTCGTTCCTCTCTCCTGCTTCTCGCATTTCTCTTCCGGCCACCGCACGCTGCCCCTCCGATCCACCTTCCTTCGACGCCGCCCTCCTCAATATCACTTCACTGGAGAAGTCTCGCGGTGATTTTGCGCGGTCTGCTACCTCAACGCCGCTACATGGAAACCGGCGGCGGCGGCGGCTACTAAAACTTGGCATAGCAGGAGGTAAGAGTAAGAAGACCAAGAGGACTGCATCCAAATCTGATGATATCTACCTTAAGTTACTCGTCCAGCTTTACCGCTTCCTTGTCCGTCAGACTGGAAGCAATTTCGATGCTGTGATTCTCTAG

Coding sequence (CDS)

ATGACTAATTTTAAATTAACTAAACTGAGTCGGGTAGTCCGGGCTAACTACCAAACGAAGAGGAATATTTGGTGCACAAGATCTGCTGACCCTTATTCCCTCCCTTTCTTCCTTTTTATCTCGTTCCTCTCTCCTGCTTCTCGCATTTCTCTTCCGGCCACCGCACGCTGCCCCTCCGATCCACCTTCCTTCGACGCCGCCCTCCTCAATATCACTTCACTGGAGAAGTCTCGCGGTGATTTTGCGCGGTCTGCTACCTCAACGCCGCTACATGGAAACCGGCGGCGGCGGCGGCTACTAAAACTTGGCATAGCAGGAGGTAAGAGTAAGAAGACCAAGAGGACTGCATCCAAATCTGATGATATCTACCTTAAGTTACTCGTCCAGCTTTACCGCTTCCTTGTCCGTCAGACTGGAAGCAATTTCGATGCTGTGATTCTCTAG

Protein sequence

MTNFKLTKLSRVVRANYQTKRNIWCTRSADPYSLPFFLFISFLSPASRISLPATARCPSDPPSFDAALLNITSLEKSRGDFARSATSTPLHGNRRRRRLLKLGIAGGKSKKTKRTASKSDDIYLKLLVQLYRFLVRQTGSNFDAVIL
BLAST of CsGy4G013350 vs. NCBI nr
Match: XP_023531430.1 (60S ribosomal protein L18-2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 80.1 bits (196), Expect = 6.9e-12
Identity = 43/53 (81.13%), Postives = 47/53 (88.68%), Query Frame = 0

Query: 98  RLLKLGI---AGGKSKKTKRTASKSDDIYLKLLVQLYRFLVRQTGSNFDAVIL 148
           RL  +GI   AGGKSKKTKRTA KSDDIYLKLLV+LYRFLVR+TGSNF+AVIL
Sbjct: 24  RLAAMGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVIL 76

BLAST of CsGy4G013350 vs. NCBI nr
Match: XP_004144773.1 (PREDICTED: 60S ribosomal protein L18-3 [Cucumis sativus] >KGN60965.1 hypothetical protein Csa_2G032220 [Cucumis sativus])

HSP 1 Score: 79.7 bits (195), Expect = 9.0e-12
Identity = 39/44 (88.64%), Postives = 43/44 (97.73%), Query Frame = 0

Query: 104 IAGGKSKKTKRTASKSDDIYLKLLVQLYRFLVRQTGSNFDAVIL 148
           +AGGKSKKTKRTA KSDDIYLKLLV+LYRFLVR+TGSNF+AVIL
Sbjct: 6   VAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVIL 49

BLAST of CsGy4G013350 vs. NCBI nr
Match: XP_008454015.1 (PREDICTED: 60S ribosomal protein L18-3 [Cucumis melo])

HSP 1 Score: 79.7 bits (195), Expect = 9.0e-12
Identity = 39/44 (88.64%), Postives = 43/44 (97.73%), Query Frame = 0

Query: 104 IAGGKSKKTKRTASKSDDIYLKLLVQLYRFLVRQTGSNFDAVIL 148
           +AGGKSKKTKRTA KSDDIYLKLLV+LYRFLVR+TGSNF+AVIL
Sbjct: 6   VAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVIL 49

BLAST of CsGy4G013350 vs. NCBI nr
Match: XP_010546736.1 (PREDICTED: 60S ribosomal protein L18-3 [Tarenaya hassleriana])

HSP 1 Score: 79.7 bits (195), Expect = 9.0e-12
Identity = 39/44 (88.64%), Postives = 43/44 (97.73%), Query Frame = 0

Query: 104 IAGGKSKKTKRTASKSDDIYLKLLVQLYRFLVRQTGSNFDAVIL 148
           IAGGKSKKTKRTA KSDD+YLKLLV+LYRFLVR+TGSNF+AVIL
Sbjct: 6   IAGGKSKKTKRTAPKSDDVYLKLLVKLYRFLVRRTGSNFNAVIL 49

BLAST of CsGy4G013350 vs. NCBI nr
Match: XP_010524859.1 (PREDICTED: 60S ribosomal protein L18-3 [Tarenaya hassleriana])

HSP 1 Score: 79.7 bits (195), Expect = 9.0e-12
Identity = 39/44 (88.64%), Postives = 43/44 (97.73%), Query Frame = 0

Query: 104 IAGGKSKKTKRTASKSDDIYLKLLVQLYRFLVRQTGSNFDAVIL 148
           IAGGKSKKTKRTA KSDD+YLKLLV+LYRFLVR+TGSNF+AVIL
Sbjct: 6   IAGGKSKKTKRTAPKSDDVYLKLLVKLYRFLVRRTGSNFNAVIL 49

BLAST of CsGy4G013350 vs. TAIR10
Match: AT5G27850.1 (Ribosomal protein L18e/L15 superfamily protein)

HSP 1 Score: 75.9 bits (185), Expect = 2.4e-14
Identity = 37/44 (84.09%), Postives = 42/44 (95.45%), Query Frame = 0

Query: 104 IAGGKSKKTKRTASKSDDIYLKLLVQLYRFLVRQTGSNFDAVIL 148
           IAGGKSKKTKRTA KSDD+YLKLLV+LYRFLVR++ SNF+AVIL
Sbjct: 6   IAGGKSKKTKRTAPKSDDVYLKLLVKLYRFLVRRSNSNFNAVIL 49

BLAST of CsGy4G013350 vs. TAIR10
Match: AT3G05590.1 (ribosomal protein L18)

HSP 1 Score: 71.6 bits (174), Expect = 4.5e-13
Identity = 35/44 (79.55%), Postives = 39/44 (88.64%), Query Frame = 0

Query: 104 IAGGKSKKTKRTASKSDDIYLKLLVQLYRFLVRQTGSNFDAVIL 148
           IAGGKSKKTKRTA KSDD+YLKL V+LYRFLVR+T S F+ VIL
Sbjct: 6   IAGGKSKKTKRTAPKSDDVYLKLTVKLYRFLVRRTNSKFNGVIL 49

BLAST of CsGy4G013350 vs. Swiss-Prot
Match: sp|Q940B0|RL183_ARATH (60S ribosomal protein L18-3 OS=Arabidopsis thaliana OX=3702 GN=RPL18C PE=2 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 4.3e-13
Identity = 37/44 (84.09%), Postives = 42/44 (95.45%), Query Frame = 0

Query: 104 IAGGKSKKTKRTASKSDDIYLKLLVQLYRFLVRQTGSNFDAVIL 148
           IAGGKSKKTKRTA KSDD+YLKLLV+LYRFLVR++ SNF+AVIL
Sbjct: 6   IAGGKSKKTKRTAPKSDDVYLKLLVKLYRFLVRRSNSNFNAVIL 49

BLAST of CsGy4G013350 vs. Swiss-Prot
Match: sp|P42791|RL182_ARATH (60S ribosomal protein L18-2 OS=Arabidopsis thaliana OX=3702 GN=RPL18B PE=1 SV=2)

HSP 1 Score: 71.6 bits (174), Expect = 8.0e-12
Identity = 35/44 (79.55%), Postives = 39/44 (88.64%), Query Frame = 0

Query: 104 IAGGKSKKTKRTASKSDDIYLKLLVQLYRFLVRQTGSNFDAVIL 148
           IAGGKSKKTKRTA KSDD+YLKL V+LYRFLVR+T S F+ VIL
Sbjct: 6   IAGGKSKKTKRTAPKSDDVYLKLTVKLYRFLVRRTNSKFNGVIL 49

BLAST of CsGy4G013350 vs. Swiss-Prot
Match: sp|O65729|RL18_CICAR (60S ribosomal protein L18 (Fragment) OS=Cicer arietinum OX=3827 GN=RPL18 PE=2 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 1.1e-11
Identity = 35/43 (81.40%), Postives = 41/43 (95.35%), Query Frame = 0

Query: 105 AGGKSKKTKRTASKSDDIYLKLLVQLYRFLVRQTGSNFDAVIL 148
           AGGK+KKTKRT+ KS+DIYLKLLV+LYRFLVR+T SNF+AVIL
Sbjct: 4   AGGKNKKTKRTSPKSNDIYLKLLVKLYRFLVRRTDSNFNAVIL 46

BLAST of CsGy4G013350 vs. Swiss-Prot
Match: sp|O22254|RL181_ARATH (Putative 60S ribosomal protein L18-1 OS=Arabidopsis thaliana OX=3702 GN=RPL18A PE=3 SV=3)

HSP 1 Score: 65.9 bits (159), Expect = 4.4e-10
Identity = 33/44 (75.00%), Postives = 38/44 (86.36%), Query Frame = 0

Query: 104 IAGGKSKKTKRTASKSDDIYLKLLVQLYRFLVRQTGSNFDAVIL 148
           IAGGKSKKTKRT  KSDD+YLKLLV+  R+LVR+T S F+AVIL
Sbjct: 6   IAGGKSKKTKRTEPKSDDVYLKLLVKANRYLVRRTESKFNAVIL 49

BLAST of CsGy4G013350 vs. Swiss-Prot
Match: sp|P09897|RL18A_XENLA (60S ribosomal protein L18-A OS=Xenopus laevis OX=8355 GN=rpl18-a PE=2 SV=2)

HSP 1 Score: 51.6 bits (122), Expect = 8.6e-06
Identity = 24/46 (52.17%), Postives = 33/46 (71.74%), Query Frame = 0

Query: 102 LGIAGGKSKKTKRTASKSDDIYLKLLVQLYRFLVRQTGSNFDAVIL 148
           + I   K +K +R   KS DIYL+LLV+LYRFL R+T S+F+ V+L
Sbjct: 3   IDIRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSSFNRVVL 48

BLAST of CsGy4G013350 vs. TrEMBL
Match: tr|A0A200QSM6|A0A200QSM6_9MAGN (Ribosomal protein L18e OS=Macleaya cordata OX=56857 GN=BVC80_8775g29 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 6.0e-12
Identity = 39/44 (88.64%), Postives = 43/44 (97.73%), Query Frame = 0

Query: 104 IAGGKSKKTKRTASKSDDIYLKLLVQLYRFLVRQTGSNFDAVIL 148
           +AGGKSKKTKRTA KSDDIYLKLLV+LYRFLVR+TGSNF+AVIL
Sbjct: 33  VAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVIL 76

BLAST of CsGy4G013350 vs. TrEMBL
Match: tr|A0A1S3BYV3|A0A1S3BYV3_CUCME (60S ribosomal protein L18-3 OS=Cucumis melo OX=3656 GN=LOC103494561 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 6.0e-12
Identity = 39/44 (88.64%), Postives = 43/44 (97.73%), Query Frame = 0

Query: 104 IAGGKSKKTKRTASKSDDIYLKLLVQLYRFLVRQTGSNFDAVIL 148
           +AGGKSKKTKRTA KSDDIYLKLLV+LYRFLVR+TGSNF+AVIL
Sbjct: 6   VAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVIL 49

BLAST of CsGy4G013350 vs. TrEMBL
Match: tr|A0A0A0LFX7|A0A0A0LFX7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G032220 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 6.0e-12
Identity = 39/44 (88.64%), Postives = 43/44 (97.73%), Query Frame = 0

Query: 104 IAGGKSKKTKRTASKSDDIYLKLLVQLYRFLVRQTGSNFDAVIL 148
           +AGGKSKKTKRTA KSDDIYLKLLV+LYRFLVR+TGSNF+AVIL
Sbjct: 6   VAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVIL 49

BLAST of CsGy4G013350 vs. TrEMBL
Match: tr|A0A0D3AXB3|A0A0D3AXB3_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea OX=109376 GN=106301699 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 7.8e-12
Identity = 39/44 (88.64%), Postives = 42/44 (95.45%), Query Frame = 0

Query: 104 IAGGKSKKTKRTASKSDDIYLKLLVQLYRFLVRQTGSNFDAVIL 148
           IAGGKSKKTKRTA KSDD+YLKLLV+LYRFLVR+TGS FDAVIL
Sbjct: 6   IAGGKSKKTKRTAPKSDDVYLKLLVKLYRFLVRRTGSKFDAVIL 49

BLAST of CsGy4G013350 vs. TrEMBL
Match: tr|M4F6A2|M4F6A2_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis OX=51351 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 7.8e-12
Identity = 39/44 (88.64%), Postives = 42/44 (95.45%), Query Frame = 0

Query: 104 IAGGKSKKTKRTASKSDDIYLKLLVQLYRFLVRQTGSNFDAVIL 148
           IAGGKSKKTKRTA KSDD+YLKLLV+LYRFLVR+TGS FDAVIL
Sbjct: 6   IAGGKSKKTKRTAPKSDDVYLKLLVKLYRFLVRRTGSKFDAVIL 49

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_023531430.16.9e-1281.1360S ribosomal protein L18-2-like [Cucurbita pepo subsp. pepo][more]
XP_004144773.19.0e-1288.64PREDICTED: 60S ribosomal protein L18-3 [Cucumis sativus] >KGN60965.1 hypothetica... [more]
XP_008454015.19.0e-1288.64PREDICTED: 60S ribosomal protein L18-3 [Cucumis melo][more]
XP_010546736.19.0e-1288.64PREDICTED: 60S ribosomal protein L18-3 [Tarenaya hassleriana][more]
XP_010524859.19.0e-1288.64PREDICTED: 60S ribosomal protein L18-3 [Tarenaya hassleriana][more]
Match NameE-valueIdentityDescription
AT5G27850.12.4e-1484.09Ribosomal protein L18e/L15 superfamily protein[more]
AT3G05590.14.5e-1379.55ribosomal protein L18[more]
Match NameE-valueIdentityDescription
sp|Q940B0|RL183_ARATH4.3e-1384.0960S ribosomal protein L18-3 OS=Arabidopsis thaliana OX=3702 GN=RPL18C PE=2 SV=1[more]
sp|P42791|RL182_ARATH8.0e-1279.5560S ribosomal protein L18-2 OS=Arabidopsis thaliana OX=3702 GN=RPL18B PE=1 SV=2[more]
sp|O65729|RL18_CICAR1.1e-1181.4060S ribosomal protein L18 (Fragment) OS=Cicer arietinum OX=3827 GN=RPL18 PE=2 SV... [more]
sp|O22254|RL181_ARATH4.4e-1075.00Putative 60S ribosomal protein L18-1 OS=Arabidopsis thaliana OX=3702 GN=RPL18A P... [more]
sp|P09897|RL18A_XENLA8.6e-0652.1760S ribosomal protein L18-A OS=Xenopus laevis OX=8355 GN=rpl18-a PE=2 SV=2[more]
Match NameE-valueIdentityDescription
tr|A0A200QSM6|A0A200QSM6_9MAGN6.0e-1288.64Ribosomal protein L18e OS=Macleaya cordata OX=56857 GN=BVC80_8775g29 PE=4 SV=1[more]
tr|A0A1S3BYV3|A0A1S3BYV3_CUCME6.0e-1288.6460S ribosomal protein L18-3 OS=Cucumis melo OX=3656 GN=LOC103494561 PE=4 SV=1[more]
tr|A0A0A0LFX7|A0A0A0LFX7_CUCSA6.0e-1288.64Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G032220 PE=4 SV=1[more]
tr|A0A0D3AXB3|A0A0D3AXB3_BRAOL7.8e-1288.64Uncharacterized protein OS=Brassica oleracea var. oleracea OX=109376 GN=10630169... [more]
tr|M4F6A2|M4F6A2_BRARP7.8e-1288.64Uncharacterized protein OS=Brassica rapa subsp. pekinensis OX=51351 PE=4 SV=1[more]
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO:0005622intracellular
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: INTERPRO
TermDefinition
IPR000039Ribosomal_L18e
IPR021131Ribosomal_L18e/L15P
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005840 ribosome
cellular_component GO:0005622 intracellular
molecular_function GO:0003735 structural constituent of ribosome

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy4G013350.1CsGy4G013350.1mRNA


Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR021131Ribosomal protein L18e/L15PPFAMPF17135Ribosomal_L18coord: 108..147
e-value: 3.0E-11
score: 43.0
NoneNo IPR availableGENE3DG3DSA:3.100.10.10coord: 101..147
e-value: 6.8E-11
score: 44.0
NoneNo IPR availablePANTHERPTHR10934:SF960S RIBOSOMAL PROTEIN L18-1-RELATEDcoord: 104..147
IPR000039Ribosomal protein L18ePANTHERPTHR1093460S RIBOSOMAL PROTEIN L18coord: 104..147