CsGy4G013140 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy4G013140
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Lipoxygenase
Location	Chr4 : 18292341 .. 18292745 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGAAATCTCAAGGCCTTGGTTCATCCATAGGGGTGGCGCCGGTGAGTCTCCACCATACGCGGACATCGTTGGCACGTCGTGGCACCGACGGCAGTGCTTTGGTTCCTTATCAGAATAATAATGATCTCCAAAAGAAACTAAGAGGGATTAAGATCAAGAATAATAATGATAATGGAGGTTTGAGATCACTGTCTGGAAGTGGAATAATCAAAGCAGCCTTAGCAACAGCTACTGAAACAACCACTAGTGTCATTACGACAGTTACTGTGAAGAAGATCACAGGAGAAATCACTTCATCCACCATTGTCAAGGAAAACCAATTAGCCGCCCCTCCAAAATTTCTCCAGCTTGGGTTCGCCAGCATTCTCACTGATCCTAGTAAGTTTCTCTTCACAGTATAA

mRNA sequence

ATGTTGAAATCTCAAGGCCTTGGTTCATCCATAGGGGTGGCGCCGGTGAGTCTCCACCATACGCGGACATCGTTGGCACGTCGTGGCACCGACGGCAGTGCTTTGGTTCCTTATCAGAATAATAATGATCTCCAAAAGAAACTAAGAGGGATTAAGATCAAGAATAATAATGATAATGGAGGTTTGAGATCACTGTCTGGAAGTGGAATAATCAAAGCAGCCTTAGCAACAGCTACTGAAACAACCACTAGTGTCATTACGACAGTTACTGTGAAGAAGATCACAGGAGAAATCACTTCATCCACCATTGTCAAGGAAAACCAATTAGCCGCCCCTCCAAAATTTCTCCAGCTTGGGTTCGCCAGCATTCTCACTGATCCTAGTAAGTTTCTCTTCACAGTATAA

Coding sequence (CDS)

ATGTTGAAATCTCAAGGCCTTGGTTCATCCATAGGGGTGGCGCCGGTGAGTCTCCACCATACGCGGACATCGTTGGCACGTCGTGGCACCGACGGCAGTGCTTTGGTTCCTTATCAGAATAATAATGATCTCCAAAAGAAACTAAGAGGGATTAAGATCAAGAATAATAATGATAATGGAGGTTTGAGATCACTGTCTGGAAGTGGAATAATCAAAGCAGCCTTAGCAACAGCTACTGAAACAACCACTAGTGTCATTACGACAGTTACTGTGAAGAAGATCACAGGAGAAATCACTTCATCCACCATTGTCAAGGAAAACCAATTAGCCGCCCCTCCAAAATTTCTCCAGCTTGGGTTCGCCAGCATTCTCACTGATCCTAGTAAGTTTCTCTTCACAGTATAA

Protein sequence

MLKSQGLGSSIGVAPVSLHHTRTSLARRGTDGSALVPYQNNNDLQKKLRGIKIKNNNDNGGLRSLSGSGIIKAALATATETTTSVITTVTVKKITGEITSSTIVKENQLAAPPKFLQLGFASILTDPSKFLFTV

Homology

[Close]

BLAST of CsGy4G013140 vs. NCBI nr
Match: XP_004142137.1 (PREDICTED: linoleate 13S-lipoxygenase 2-1, chloroplastic-like [Cucumis sativus])

HSP 1 Score: 220.7 bits (561), Expect = 3.0e-54
Identity = 127/128 (99.22%), Postives = 127/128 (99.22%), Query Frame = 0


Query: 1   MLKSQGLGSSIGVAPVSLHHTRTSLARRGTDGSALVPYQNNNDLQKKLRGIKIKNNNDNG 60
           MLKSQGLGSSIGVAPVSLHHTRTSLARRG DGSALVPYQNNNDLQKKLRGIKIKNNNDNG
Sbjct: 1   MLKSQGLGSSIGVAPVSLHHTRTSLARRGIDGSALVPYQNNNDLQKKLRGIKIKNNNDNG 60

Query: 61  GLRSLSGSGIIKAALATATXXXXXXXXXVTVKKITGEITSSTIVKENQLAAPPKFLQLGF 120
           GLRSLSGSGIIKAALATATXXXXXXXXXVTVKKITGEITSSTIVKENQLAAPPKFLQLGF
Sbjct: 61  GLRSLSGSGIIKAALATATXXXXXXXXXVTVKKITGEITSSTIVKENQLAAPPKFLQLGF 120

Query: 121 ASILTDPS 129
           ASILTDPS
Sbjct: 121 ASILTDPS 128

[Close]

BLAST of CsGy4G013140 vs. NCBI nr
Match: KGN54137.1 (hypothetical protein Csa_4G288080 [Cucumis sativus])

HSP 1 Score: 220.7 bits (561), Expect = 3.0e-54
Identity = 127/128 (99.22%), Postives = 127/128 (99.22%), Query Frame = 0


Query: 1   MLKSQGLGSSIGVAPVSLHHTRTSLARRGTDGSALVPYQNNNDLQKKLRGIKIKNNNDNG 60
           MLKSQGLGSSIGVAPVSLHHTRTSLARRG DGSALVPYQNNNDLQKKLRGIKIKNNNDNG
Sbjct: 1   MLKSQGLGSSIGVAPVSLHHTRTSLARRGIDGSALVPYQNNNDLQKKLRGIKIKNNNDNG 60

Query: 61  GLRSLSGSGIIKAALATATXXXXXXXXXVTVKKITGEITSSTIVKENQLAAPPKFLQLGF 120
           GLRSLSGSGIIKAALATATXXXXXXXXXVTVKKITGEITSSTIVKENQLAAPPKFLQLGF
Sbjct: 61  GLRSLSGSGIIKAALATATXXXXXXXXXVTVKKITGEITSSTIVKENQLAAPPKFLQLGF 120

Query: 121 ASILTDPS 129
           ASILTDPS
Sbjct: 121 ASILTDPS 128

[Close]

BLAST of CsGy4G013140 vs. NCBI nr
Match: XP_008449749.1 (PREDICTED: linoleate 13S-lipoxygenase 2-1, chloroplastic-like [Cucumis melo])

HSP 1 Score: 152.9 bits (385), Expect = 7.6e-34
Identity = 101/130 (77.69%), Postives = 107/130 (82.31%), Query Frame = 0


Query: 1   MLKSQGLGSSIGVAPVSLHHTRTSLA-RRGTDGSALVPYQNNNDLQKKLRGIKIKNNNDN 60
           MLKSQGLGSSIGVAPV+L H +TSLA RR  DGSALVPYQNNNDLQKKLRGIKIKNN++N
Sbjct: 1   MLKSQGLGSSIGVAPVTLRHMQTSLARRRNIDGSALVPYQNNNDLQKKLRGIKIKNNDNN 60

Query: 61  GGLRSLSG-SGIIKAALATATXXXXXXXXXVTVKKITGEITSSTIVKENQLAAPPKFLQL 120
           GGLR +SG SG IKAALATATXXXXXXXXX           SSTI+KENQLA   K LQL
Sbjct: 61  GGLRLMSGPSGTIKAALATATXXXXXXXXXXXXXXXXXXXXSSTIIKENQLAT-QKVLQL 120

Query: 121 GFASILTDPS 129
           GFASILTDPS
Sbjct: 121 GFASILTDPS 129

[Close]

BLAST of CsGy4G013140 vs. NCBI nr
Match: XP_022995022.1 (linoleate 13S-lipoxygenase 2-1, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 80.1 bits (196), Expect = 6.3e-12
Identity = 57/127 (44.88%), Postives = 71/127 (55.91%), Query Frame = 0


Query: 1   MLKSQGLGSSIGVAPVSLHHTRTSLARRGTDGSALVPYQNNNDLQKKLRGIKIKNNNDNG 60
           MLKSQG+G S  VAP +L H +  L  RG +     P+ NN   ++K + I       NG
Sbjct: 1   MLKSQGVGCSTRVAPATLCHLQRPLLGRGINAGVSFPFWNNPGNKQKAKSI------SNG 60

Query: 61  GLRSLSGSGIIKAALATATXXXXXXXXXVTVKKITGEITSSTIVKENQLAAPPKFLQLGF 120
            LR +S    IKAAL T           V VKKITGEITSST++ E++  A  K L+L F
Sbjct: 61  RLRLVSRE--IKAALTTVAEPTTTVLTKVIVKKITGEITSSTLLMESK--ALDKLLKLEF 117

Query: 121 ASILTDP 128
           ASIL DP
Sbjct: 121 ASILVDP 117

[Close]

BLAST of CsGy4G013140 vs. NCBI nr
Match: XP_022958148.1 (linoleate 13S-lipoxygenase 2-1, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 77.8 bits (190), Expect = 3.1e-11
Identity = 56/127 (44.09%), Postives = 70/127 (55.12%), Query Frame = 0


Query: 1   MLKSQGLGSSIGVAPVSLHHTRTSLARRGTDGSALVPYQNNNDLQKKLRGIKIKNNNDNG 60
           MLKSQG+G S  VAP +L H +     RG +     P+ NN   ++K + I       NG
Sbjct: 1   MLKSQGVGCSTRVAPATLCHLQRPSLGRGINAGVSFPFWNNPGNKQKAKSI------SNG 60

Query: 61  GLRSLSGSGIIKAALATATXXXXXXXXXVTVKKITGEITSSTIVKENQLAAPPKFLQLGF 120
            LR +S    IKAAL T           V VKKITGEITSST++ E++  A  K L+L F
Sbjct: 61  RLRLVSRE--IKAALTTVAEPTTTVLTKVIVKKITGEITSSTLLMESK--ALDKLLKLEF 117

Query: 121 ASILTDP 128
           ASIL DP
Sbjct: 121 ASILVDP 117

[Close]

BLAST of CsGy4G013140 vs. TrEMBL
Match: tr|A0A0A0L0L3|A0A0A0L0L3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G288080 PE=4 SV=1)

HSP 1 Score: 220.7 bits (561), Expect = 2.0e-54
Identity = 127/128 (99.22%), Postives = 127/128 (99.22%), Query Frame = 0


Query: 1   MLKSQGLGSSIGVAPVSLHHTRTSLARRGTDGSALVPYQNNNDLQKKLRGIKIKNNNDNG 60
           MLKSQGLGSSIGVAPVSLHHTRTSLARRG DGSALVPYQNNNDLQKKLRGIKIKNNNDNG
Sbjct: 1   MLKSQGLGSSIGVAPVSLHHTRTSLARRGIDGSALVPYQNNNDLQKKLRGIKIKNNNDNG 60

Query: 61  GLRSLSGSGIIKAALATATXXXXXXXXXVTVKKITGEITSSTIVKENQLAAPPKFLQLGF 120
           GLRSLSGSGIIKAALATATXXXXXXXXXVTVKKITGEITSSTIVKENQLAAPPKFLQLGF
Sbjct: 61  GLRSLSGSGIIKAALATATXXXXXXXXXVTVKKITGEITSSTIVKENQLAAPPKFLQLGF 120

Query: 121 ASILTDPS 129
           ASILTDPS
Sbjct: 121 ASILTDPS 128

[Close]

BLAST of CsGy4G013140 vs. TrEMBL
Match: tr|A0A1S3BMR0|A0A1S3BMR0_CUCME (Lipoxygenase OS=Cucumis melo OX=3656 GN=LOC103491540 PE=3 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 5.1e-34
Identity = 101/130 (77.69%), Postives = 107/130 (82.31%), Query Frame = 0


Query: 1   MLKSQGLGSSIGVAPVSLHHTRTSLA-RRGTDGSALVPYQNNNDLQKKLRGIKIKNNNDN 60
           MLKSQGLGSSIGVAPV+L H +TSLA RR  DGSALVPYQNNNDLQKKLRGIKIKNN++N
Sbjct: 1   MLKSQGLGSSIGVAPVTLRHMQTSLARRRNIDGSALVPYQNNNDLQKKLRGIKIKNNDNN 60

Query: 61  GGLRSLSG-SGIIKAALATATXXXXXXXXXVTVKKITGEITSSTIVKENQLAAPPKFLQL 120
           GGLR +SG SG IKAALATATXXXXXXXXX           SSTI+KENQLA   K LQL
Sbjct: 61  GGLRLMSGPSGTIKAALATATXXXXXXXXXXXXXXXXXXXXSSTIIKENQLAT-QKVLQL 120

Query: 121 GFASILTDPS 129
           GFASILTDPS
Sbjct: 121 GFASILTDPS 129

The following BLAST results are available for this feature:

BLAST of CsGy4G013140 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004142137.1	3.0e-54	99.22	PREDICTED: linoleate 13S-lipoxygenase 2-1, chloroplastic-like [Cucumis sativus]	[more]
KGN54137.1	3.0e-54	99.22	hypothetical protein Csa_4G288080 [Cucumis sativus]	[more]
XP_008449749.1	7.6e-34	77.69	PREDICTED: linoleate 13S-lipoxygenase 2-1, chloroplastic-like [Cucumis melo]	[more]
XP_022995022.1	6.3e-12	44.88	linoleate 13S-lipoxygenase 2-1, chloroplastic-like [Cucurbita maxima]	[more]
XP_022958148.1	3.1e-11	44.09	linoleate 13S-lipoxygenase 2-1, chloroplastic-like [Cucurbita moschata]	[more]

BLAST of CsGy4G013140 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsGy4G013140 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy4G013140 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L0L3\|A0A0A0L0L3_CUCSA	2.0e-54	99.22	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G288080 PE=4 SV=1	[more]
tr\|A0A1S3BMR0\|A0A1S3BMR0_CUCME	5.1e-34	77.69	Lipoxygenase OS=Cucumis melo OX=3656 GN=LOC103491540 PE=3 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055114	oxidation-reduction process
biological_process	GO:0031408	oxylipin biosynthetic process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0016702	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy4G013140.1	CsGy4G013140.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy4G013140	Csa4G288080	Cucumber (Chinese Long) v2	cgybcuB167
CsGy4G013140	CSPI04G13530	Wild cucumber (PI 183967)	cgybcpiB170

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy4G013140	Watermelon (97103) v2	cgybwmbB273
CsGy4G013140	Wax gourd	cgybwgoB373
CsGy4G013140	Cucurbita maxima (Rimu)	cgybcmaB525
CsGy4G013140	Cucurbita maxima (Rimu)	cgybcmaB522
CsGy4G013140	Cucurbita moschata (Rifu)	cgybcmoB493
CsGy4G013140	Cucurbita moschata (Rifu)	cgybcmoB496
CsGy4G013140	Cucurbita pepo (Zucchini)	cgybcpeB496
CsGy4G013140	Cucurbita pepo (Zucchini)	cgybcpeB561
CsGy4G013140	Bottle gourd (USVL1VR-Ls)	cgyblsiB232
CsGy4G013140	Bottle gourd (USVL1VR-Ls)	cgyblsiB234
CsGy4G013140	Melon (DHL92) v3.5.1	cgybmeB249
CsGy4G013140	Melon (DHL92) v3.6.1	cgybmedB247
CsGy4G013140	Watermelon (Charleston Gray)	cgybwcgB272
CsGy4G013140	Watermelon (97103) v1	cgybwmB323
CsGy4G013140	Watermelon (97103) v1	cgybwmB325
CsGy4G013140	Silver-seed gourd	carcgybB0529
CsGy4G013140	Silver-seed gourd	carcgybB0909
CsGy4G013140	Cucumber (Chinese Long) v3	cgybcucB171