CsGy4G013130 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy4G013130
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Lipoxygenase
Location	Chr4 : 18281064 .. 18281592 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGAAATCTCTAGGCTGTGGGTCTTCGACTCAGGTCGCTTCGGCGACTCTCTGCCATTTGCGGAGGTCGTCGAGTCACAGTGGTGCTTTGTTTCAGCCATATCCAAATGATATTAACCTGAAGAAGCAGCTGATGAGGGGGAAAAAGAGTAAGAATAATGGAGGGTTGAGATTGGTGTCCGGAGGTGGGATAATCAAAGCAGCCTTAGCCATATCCGCGGAACCCACCACCACGGTCATCACAAAAGTGATTGTGAAGAAGATCACCGGAGTAACCTCCTCGTCCAACCTTACGAATGGAAGCCAACCCCCTCAAAAGTTGCTACAGCTTGGGTTCGCTAGCACTTTACTTGATCCCAGTAACTCTCTTTTATTACACACTTATTATCTAAACAAAAACTATAATCTTTATTTTAAAACGCTAATCTTTTTAACCTTTTTACTTTTTCTTTCTCTAACATGTGGTATTTGCTCATTTCCTCCTAGATCCAAGCTATCGTTTCAGTGAGAATCATAAAGACAAATAA

mRNA sequence

ATGTTGAAATCTCTAGGCTGTGGGTCTTCGACTCAGGTCGCTTCGGCGACTCTCTGCCATTTGCGGAGGTCGTCGAGTCACAGTGGTGCTTTGTTTCAGCCATATCCAAATGATATTAACCTGAAGAAGCAGCTGATGAGGGGGAAAAAGAGTAAGAATAATGGAGGGTTGAGATTGGTGTCCGGAGGTGGGATAATCAAAGCAGCCTTAGCCATATCCGCGGAACCCACCACCACGGTCATCACAAAAGTGATTGTGAAGAAGATCACCGGAGTAACCTCCTCGTCCAACCTTACGAATGGAAGCCAACCCCCTCAAAAGTTGCTACAGCTTGGGTTCGCTAGCACTTTACTTGATCCCAATCCAAGCTATCGTTTCAGTGAGAATCATAAAGACAAATAA

Coding sequence (CDS)

ATGTTGAAATCTCTAGGCTGTGGGTCTTCGACTCAGGTCGCTTCGGCGACTCTCTGCCATTTGCGGAGGTCGTCGAGTCACAGTGGTGCTTTGTTTCAGCCATATCCAAATGATATTAACCTGAAGAAGCAGCTGATGAGGGGGAAAAAGAGTAAGAATAATGGAGGGTTGAGATTGGTGTCCGGAGGTGGGATAATCAAAGCAGCCTTAGCCATATCCGCGGAACCCACCACCACGGTCATCACAAAAGTGATTGTGAAGAAGATCACCGGAGTAACCTCCTCGTCCAACCTTACGAATGGAAGCCAACCCCCTCAAAAGTTGCTACAGCTTGGGTTCGCTAGCACTTTACTTGATCCCAATCCAAGCTATCGTTTCAGTGAGAATCATAAAGACAAATAA

Protein sequence

MLKSLGCGSSTQVASATLCHLRRSSSHSGALFQPYPNDINLKKQLMRGKKSKNNGGLRLVSGGGIIKAALAISAEPTTTVITKVIVKKITGVTSSSNLTNGSQPPQKLLQLGFASTLLDPNPSYRFSENHKDK

Homology

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BLAST of CsGy4G013130 vs. NCBI nr
Match: XP_004142236.1 (PREDICTED: linoleate 13S-lipoxygenase 2-1, chloroplastic [Cucumis sativus])

HSP 1 Score: 152.5 bits (384), Expect = 9.9e-34
Identity = 119/120 (99.17%), Postives = 119/120 (99.17%), Query Frame = 0


Query: 1   MLKSLGCGSSTQVASATLCHLRRSSSHSGALFQPYPNDINLKKQLMRGKKSKNXXXXXXX 60
           MLKSLGCGSSTQVASATLCHL RSSSHSGALFQPYPNDINLKKQLMRGKKSKNXXXXXXX
Sbjct: 1   MLKSLGCGSSTQVASATLCHLWRSSSHSGALFQPYPNDINLKKQLMRGKKSKNXXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXITGVTSSSNLTNGSQPPQKLLQLGFASTLLDP 120
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXITGVTSSSNLTNGSQPPQKLLQLGFASTLLDP
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXITGVTSSSNLTNGSQPPQKLLQLGFASTLLDP 120

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BLAST of CsGy4G013130 vs. NCBI nr
Match: KGN54136.1 (hypothetical protein Csa_4G288070 [Cucumis sativus])

HSP 1 Score: 152.5 bits (384), Expect = 9.9e-34
Identity = 119/120 (99.17%), Postives = 119/120 (99.17%), Query Frame = 0


Query: 1   MLKSLGCGSSTQVASATLCHLRRSSSHSGALFQPYPNDINLKKQLMRGKKSKNXXXXXXX 60
           MLKSLGCGSSTQVASATLCHL RSSSHSGALFQPYPNDINLKKQLMRGKKSKNXXXXXXX
Sbjct: 1   MLKSLGCGSSTQVASATLCHLWRSSSHSGALFQPYPNDINLKKQLMRGKKSKNXXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXITGVTSSSNLTNGSQPPQKLLQLGFASTLLDP 120
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXITGVTSSSNLTNGSQPPQKLLQLGFASTLLDP
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXITGVTSSSNLTNGSQPPQKLLQLGFASTLLDP 120

[Close]

BLAST of CsGy4G013130 vs. NCBI nr
Match: NP_001315401.1 (linoleate 13S-lipoxygenase 2-1, chloroplastic-like [Cucumis melo] >AME15769.1 lipoxygenase 13 [Cucumis melo var. makuwa])

HSP 1 Score: 105.1 bits (261), Expect = 1.8e-19
Identity = 93/120 (77.50%), Postives = 94/120 (78.33%), Query Frame = 0


Query: 1   MLKSLGCGSSTQVASATLCHLRRSSSHSGALFQPYPNDINLKKQLMRGKKSKNXXXXXXX 60
           MLKS  CGSSTQVA  TLCHLRRSS+ SGALFQPYPNDINLKKQL RGKKSKN      X
Sbjct: 1   MLKSPACGSSTQVALVTLCHLRRSSNRSGALFQPYPNDINLKKQL-RGKKSKNNGVLRLX 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXITGVTSSSNLTNGSQPPQKLLQLGFASTLLDP 120
           XXXXXXXXXXXXXXXXXXXXXXXXXXXX             SQPPQKLLQLGFAS LLDP
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEASQPPQKLLQLGFASILLDP 119

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BLAST of CsGy4G013130 vs. TrEMBL
Match: tr|A0A0A0L1W1|A0A0A0L1W1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G288070 PE=4 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 6.6e-34
Identity = 119/120 (99.17%), Postives = 119/120 (99.17%), Query Frame = 0


Query: 1   MLKSLGCGSSTQVASATLCHLRRSSSHSGALFQPYPNDINLKKQLMRGKKSKNXXXXXXX 60
           MLKSLGCGSSTQVASATLCHL RSSSHSGALFQPYPNDINLKKQLMRGKKSKNXXXXXXX
Sbjct: 1   MLKSLGCGSSTQVASATLCHLWRSSSHSGALFQPYPNDINLKKQLMRGKKSKNXXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXITGVTSSSNLTNGSQPPQKLLQLGFASTLLDP 120
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXITGVTSSSNLTNGSQPPQKLLQLGFASTLLDP
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXITGVTSSSNLTNGSQPPQKLLQLGFASTLLDP 120

[Close]

BLAST of CsGy4G013130 vs. TrEMBL
Match: tr|A0A1S3BMS1|A0A1S3BMS1_CUCME (Lipoxygenase OS=Cucumis melo OX=3656 GN=LOC103491539 PE=3 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 1.2e-19
Identity = 93/120 (77.50%), Postives = 94/120 (78.33%), Query Frame = 0


Query: 1   MLKSLGCGSSTQVASATLCHLRRSSSHSGALFQPYPNDINLKKQLMRGKKSKNXXXXXXX 60
           MLKS  CGSSTQVA  TLCHLRRSS+ SGALFQPYPNDINLKKQL RGKKSKN      X
Sbjct: 1   MLKSPACGSSTQVALVTLCHLRRSSNRSGALFQPYPNDINLKKQL-RGKKSKNNGVLRLX 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXITGVTSSSNLTNGSQPPQKLLQLGFASTLLDP 120
           XXXXXXXXXXXXXXXXXXXXXXXXXXXX             SQPPQKLLQLGFAS LLDP
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEASQPPQKLLQLGFASILLDP 119

[Close]

BLAST of CsGy4G013130 vs. TrEMBL
Match: tr|A0A125S6K8|A0A125S6K8_CUCME (Lipoxygenase OS=Cucumis melo var. makuwa OX=1194695 GN=LOX13 PE=2 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 1.2e-19
Identity = 93/120 (77.50%), Postives = 94/120 (78.33%), Query Frame = 0


Query: 1   MLKSLGCGSSTQVASATLCHLRRSSSHSGALFQPYPNDINLKKQLMRGKKSKNXXXXXXX 60
           MLKS  CGSSTQVA  TLCHLRRSS+ SGALFQPYPNDINLKKQL RGKKSKN      X
Sbjct: 1   MLKSPACGSSTQVALVTLCHLRRSSNRSGALFQPYPNDINLKKQL-RGKKSKNNGVLRLX 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXITGVTSSSNLTNGSQPPQKLLQLGFASTLLDP 120
           XXXXXXXXXXXXXXXXXXXXXXXXXXXX             SQPPQKLLQLGFAS LLDP
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEASQPPQKLLQLGFASILLDP 119

The following BLAST results are available for this feature:

BLAST of CsGy4G013130 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004142236.1	9.9e-34	99.17	PREDICTED: linoleate 13S-lipoxygenase 2-1, chloroplastic [Cucumis sativus]	[more]
KGN54136.1	9.9e-34	99.17	hypothetical protein Csa_4G288070 [Cucumis sativus]	[more]
NP_001315401.1	1.8e-19	77.50	linoleate 13S-lipoxygenase 2-1, chloroplastic-like [Cucumis melo] >AME15769.1 li...	[more]

BLAST of CsGy4G013130 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsGy4G013130 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy4G013130 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L1W1\|A0A0A0L1W1_CUCSA	6.6e-34	99.17	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G288070 PE=4 SV=1	[more]
tr\|A0A1S3BMS1\|A0A1S3BMS1_CUCME	1.2e-19	77.50	Lipoxygenase OS=Cucumis melo OX=3656 GN=LOC103491539 PE=3 SV=1	[more]
tr\|A0A125S6K8\|A0A125S6K8_CUCME	1.2e-19	77.50	Lipoxygenase OS=Cucumis melo var. makuwa OX=1194695 GN=LOX13 PE=2 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055114	oxidation-reduction process
biological_process	GO:0031408	oxylipin biosynthetic process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0016702	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy4G013130.1	CsGy4G013130.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy4G013130	Cucurbita maxima (Rimu)	cgybcmaB525
CsGy4G013130	Cucurbita maxima (Rimu)	cgybcmaB522
CsGy4G013130	Cucurbita moschata (Rifu)	cgybcmoB493
CsGy4G013130	Cucurbita moschata (Rifu)	cgybcmoB496
CsGy4G013130	Cucurbita pepo (Zucchini)	cgybcpeB496
CsGy4G013130	Cucurbita pepo (Zucchini)	cgybcpeB561
CsGy4G013130	Cucumber (Chinese Long) v2	cgybcuB167
CsGy4G013130	Bottle gourd (USVL1VR-Ls)	cgyblsiB232
CsGy4G013130	Bottle gourd (USVL1VR-Ls)	cgyblsiB234
CsGy4G013130	Melon (DHL92) v3.5.1	cgybmeB249
CsGy4G013130	Melon (DHL92) v3.6.1	cgybmedB247
CsGy4G013130	Watermelon (Charleston Gray)	cgybwcgB272
CsGy4G013130	Watermelon (97103) v1	cgybwmB323
CsGy4G013130	Watermelon (97103) v1	cgybwmB325
CsGy4G013130	Wild cucumber (PI 183967)	cgybcpiB170
CsGy4G013130	Silver-seed gourd	carcgybB0529
CsGy4G013130	Silver-seed gourd	carcgybB0909
CsGy4G013130	Cucumber (Chinese Long) v3	cgybcucB171
CsGy4G013130	Watermelon (97103) v2	cgybwmbB273
CsGy4G013130	Wax gourd	cgybwgoB373