CsGy4G013110 (gene) Cucumber (Gy14) v2

NameCsGy4G013110
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
Descriptionlipoxygenase 2, chloroplastic-like
LocationChr4 : 18266046 .. 18267655 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTTATATGGGTACTGTAGTTGTTACTGTGATACCGAAAAAGAACGAACAATTTCCTTAGGTCGAAATAATATATCTCAAGTTTGCTAGCGTCGAATTGGATTCGAGTAAGTCCTCATCTTCTCTCTTTAATTATTAATTTATATATGTTTTCCTACACTGCTAATGTAACCTATATATATTCTTCTGATGTAAACTGATTTAATAATATACATACGTACATACACAGATGAACAGCCAAAGGAATTTATCAAATGTGAGGCTCAATTACAAGAAGTTGATGAATTGGTGGAGTACAAGAAGTACAAAGGTGATATTAAGGTTGCCGAAGGTTTTGGGAAGATTGGAGCAGTGATTGTTGAACTGCAAGACGGTGTGAATGAGAGGTTTGTCGACACCATTTCTGTTGAGGCCGAAAAGCCTCCAATCTCGGTTACGTTTAGCTGCAAATCATTGGTGCAACCCAAGGGTCTTATTGACCACCGAAGGATCTTCTTTTCTTCCAACAAGGTGATTTATATAAATTGATTCAATATTATGGATCAAATATTTAAAATATTGATCTTCATGGAAATATAAAGTTATGACAATTTCATAAAATATTTTATTATGAAATATTTTAAAATACATGAAAAAAAATGAAACGTAAAATATTTACAAAATACAACAAGATATGGTAGATTATGTCCATTATTTTGATATTGATTTTTTTTTTTTTTTTTTTGTGTTTAACATTTTTTCAACACTACAATAGAAATATCAAATTCATCTCCCGTCTCTATATCAAACCTAAGCAAATGTTGAAATATGAATGAAAATATTGACAAATGGATGAAAATTTAATACAATTTTGTAAGACTAATTAATAATTGAATATGGGGATGGATGCAGTCTTATTTGTCGGGAAAAACACCAGGAGGACTGGTGAAGCTAAGAGAAGAAGACCTTGCAAATCTGAGAGGCGAAAAAGCAGATGGATCAGTAGATAGAAATGAGCGTAAGGCGTTTGAAAGAATTTATGATTACGACCTGTACAACGACCTCGGAGATCCCGACCAGTCAATGAATATGAAAAGGCCTGTTCTTGGTGGTTCAGAGGAGTATCCTTATCCTCGACGTTGTAGAACTGGTCGTCCTCCTACTCAAAATAGTATCTTAATTTTCTAAATCCTTCCTTGTTAATTTAATATTCTACACTATACATATACATACATATATATATTTATATATATATATATATATATACATATATATATATAATATATTAATGGATGTGTTTGGCCGTACAATTGGGATTTAGATCCAGCATCAGAGAAAAGGATTGAAGAATGGTTTTATGTTCCGCGAGACGAAGAATTTTCAGAGATAAAGCAAAGTAGTAGTCAACCAGGAAACGAGAAATTGTTGCGAAAATCTCCTTTCTCTGACCTTCCTGAACTTGAGATTAAAACACCTTCCGCTGCTTCCAAATTTAATCTTCAATTTAATATAGCATCCATACTTTCCTCTCATCGGCCACCTGCTCTTAAGTCATCAGATACGCCCAGTAGCACTCTCGTTGAACTTCCACCACTAGAGTCCTACAAGAGTGAGTATATATGTTTATGA

mRNA sequence

ATGAGTTATATGGATGAACAGCCAAAGGAATTTATCAAATGTGAGGCTCAATTACAAGAAGTTGATGAATTGGTGGAGTACAAGAAGTACAAAGGTGATATTAAGGTTGCCGAAGGTTTTGGGAAGATTGGAGCAGTGATTGTTGAACTGCAAGACGGTGTGAATGAGAGGTTTGTCGACACCATTTCTGTTGAGGCCGAAAAGCCTCCAATCTCGGTTACGTTTAGCTGCAAATCATTGGTGCAACCCAAGGATCCAGCATCAGAGAAAAGGATTGAAGAATGGTTTTATGTTCCGCGAGACGAAGAATTTTCAGAGATAAAGCAAAGTAGTAGTCAACCAGGAAACGAGAAATTGTTGCGAAAATCTCCTTTCTCTGACCTTCCTGAACTTGAGATTAAAACACCTTCCGCTGCTTCCAAATTTAATCTTCAATTTAATATAGCATCCATACTTTCCTCTCATCGGCCACCTGCTCTTAAGTCATCAGATACGCCCAGTAGCACTCTCGTTGAACTTCCACCACTAGAGTCCTACAAGAGTGAGTATATATGTTTATGA

Coding sequence (CDS)

ATGAGTTATATGGATGAACAGCCAAAGGAATTTATCAAATGTGAGGCTCAATTACAAGAAGTTGATGAATTGGTGGAGTACAAGAAGTACAAAGGTGATATTAAGGTTGCCGAAGGTTTTGGGAAGATTGGAGCAGTGATTGTTGAACTGCAAGACGGTGTGAATGAGAGGTTTGTCGACACCATTTCTGTTGAGGCCGAAAAGCCTCCAATCTCGGTTACGTTTAGCTGCAAATCATTGGTGCAACCCAAGGATCCAGCATCAGAGAAAAGGATTGAAGAATGGTTTTATGTTCCGCGAGACGAAGAATTTTCAGAGATAAAGCAAAGTAGTAGTCAACCAGGAAACGAGAAATTGTTGCGAAAATCTCCTTTCTCTGACCTTCCTGAACTTGAGATTAAAACACCTTCCGCTGCTTCCAAATTTAATCTTCAATTTAATATAGCATCCATACTTTCCTCTCATCGGCCACCTGCTCTTAAGTCATCAGATACGCCCAGTAGCACTCTCGTTGAACTTCCACCACTAGAGTCCTACAAGAGTGAGTATATATGTTTATGA

Protein sequence

MSYMDEQPKEFIKCEAQLQEVDELVEYKKYKGDIKVAEGFGKIGAVIVELQDGVNERFVDTISVEAEKPPISVTFSCKSLVQPKDPASEKRIEEWFYVPRDEEFSEIKQSSSQPGNEKLLRKSPFSDLPELEIKTPSAASKFNLQFNIASILSSHRPPALKSSDTPSSTLVELPPLESYKSEYICL
BLAST of CsGy4G013110 vs. NCBI nr
Match: KGN54133.1 (hypothetical protein Csa_4G287550 [Cucumis sativus])

HSP 1 Score: 320.1 bits (819), Expect = 5.0e-84
Identity = 173/208 (83.17%), Postives = 174/208 (83.65%), Query Frame = 0

Query: 5   DEQPKEFIKCEAQLQEVDELVEYKKYKGDIKVAEGFGKIGAVIVELQDGVNERFVDTISV 64
           DEQPKEFIKCEAQLQEVDE VEYKKYKGDIKVAEGFGKIGAVIVELQDGVNERFVDTISV
Sbjct: 21  DEQPKEFIKCEAQLQEVDESVEYKKYKGDIKVAEGFGKIGAVIVELQDGVNERFVDTISV 80

Query: 65  EAEKPPISVTFSCKSLVQPK------------------------------DPASEKRIEE 124
           EAEKPPISVTFSCKS VQPK                              DPASEKRIEE
Sbjct: 81  EAEKPPISVTFSCKSWVQPKGLIDHRRIFFSSNKCRIYINGCVWPYNWDLDPASEKRIEE 140

Query: 125 WFYVPRDEEFSEIKQSSSQPGNEKLLRKSPFSDLPELEIKTPSAASKFNLQFNIASILSS 183
           WFYVPRDEEFSEIKQSSSQPGNEKLLRKSPFSDLPELEIKTPSAASKFNLQFNIASILSS
Sbjct: 141 WFYVPRDEEFSEIKQSSSQPGNEKLLRKSPFSDLPELEIKTPSAASKFNLQFNIASILSS 200

BLAST of CsGy4G013110 vs. NCBI nr
Match: XP_011653578.1 (PREDICTED: LOW QUALITY PROTEIN: lipoxygenase 2, chloroplastic-like [Cucumis sativus])

HSP 1 Score: 291.2 bits (744), Expect = 2.5e-75
Identity = 172/278 (61.87%), Postives = 174/278 (62.59%), Query Frame = 0

Query: 5   DEQPKEFIKCEAQLQEVDELVEYKKYKGDIKVAEGFGKIGAVIVELQDGVNERFVDTISV 64
           +EQPKEFIKCEAQLQEVDE VEYKKYKGDIKVAEGFGKIGAVIVELQDGVNERFVDTISV
Sbjct: 37  NEQPKEFIKCEAQLQEVDESVEYKKYKGDIKVAEGFGKIGAVIVELQDGVNERFVDTISV 96

Query: 65  EAEKPPISVTFSCKSLVQPK---------------------------------------- 124
           EAEKPPISVTFSCKS VQPK                                        
Sbjct: 97  EAEKPPISVTFSCKSWVQPKGLIDHRRIFFSSNKSYLSGKTPGGLVKLREEDLANLRGEK 156

Query: 125 ------------------------------------------------------------ 183
                                                                       
Sbjct: 157 ADGSVDRNERKAFERIYDYDLYNDLGDPDQSMNLKRPVLGGSEEYPYPRRCRTGRPLTQN 216

BLAST of CsGy4G013110 vs. NCBI nr
Match: XP_004142238.2 (PREDICTED: lipoxygenase 2, chloroplastic-like [Cucumis sativus])

HSP 1 Score: 241.9 bits (616), Expect = 1.7e-60
Identity = 144/280 (51.43%), Postives = 164/280 (58.57%), Query Frame = 0

Query: 5   DEQPKEFIKCEAQLQEVDELVEYKKYKGDIKVAEGFGKIGAVIVELQDGVNERFVDTISV 64
           +EQPKEFIKCEAQLQEVDELVEYKKY G+I VAEGFG+IGAVIVELQ+GVNERF+DTISV
Sbjct: 37  NEQPKEFIKCEAQLQEVDELVEYKKYIGEIVVAEGFGEIGAVIVELQEGVNERFIDTISV 96

Query: 65  EAEKPPISVTFSCKSLVQPK---------------------------------------- 124
           EAE+PPIS+TFSCKS VQPK                                        
Sbjct: 97  EAEEPPISITFSCKSWVQPKGLIDHRRIFFSSNKSYLLGKTPRGLVKLREEDLANLRGEK 156

Query: 125 ------------------------------------------------------------ 183
                                                                       
Sbjct: 157 EDGSVDRNERKAFERIYDYDLYNDLGDPDLSMDLKRPVLGGSEEYPYPRRCRTGRPPTQN 216

BLAST of CsGy4G013110 vs. NCBI nr
Match: KGN54129.1 (hypothetical protein Csa_4G287020 [Cucumis sativus])

HSP 1 Score: 157.1 bits (396), Expect = 5.6e-35
Identity = 91/156 (58.33%), Postives = 113/156 (72.44%), Query Frame = 0

Query: 28  KKYKGDIKVAEGFGKIGAVIVELQDGVNERFVDTISVEAEKPPISVTFSCKSLVQPKDPA 87
           K ++  I V   FG+IGAVIVEL D V ERF+DTI+++ +K  + +TFSCKS VQPK+  
Sbjct: 57  KLFETSIDVPGDFGEIGAVIVELDDDVKERFIDTITIDFKKCTL-LTFSCKSWVQPKNKH 116

Query: 88  SEKRIEEWFYVPRDEEFSEIKQSSSQPGNEKLLRKSPFSDLPELEIKTPSAASKFN-LQF 147
           +E+RIE  FYVPRDE FSE KQ S    NE LL K+PFSDLPEL+IKTP AASK N L F
Sbjct: 117 AEERIEAPFYVPRDENFSEEKQGSVLAENEALLGKAPFSDLPELDIKTPFAASKINQLPF 176

Query: 148 NIASILSSHRPPALKSSDTPSSTLVELPPLESYKSE 183
           +I S++SS++PP L S D   S+ VELP  ESYK +
Sbjct: 177 DIPSLVSSNQPPPLNSLDDEPSSSVELPLPESYKRD 211

BLAST of CsGy4G013110 vs. NCBI nr
Match: XP_008449947.1 (PREDICTED: lipoxygenase 2, chloroplastic-like, partial [Cucumis melo])

HSP 1 Score: 147.5 bits (371), Expect = 4.5e-32
Identity = 76/92 (82.61%), Postives = 83/92 (90.22%), Query Frame = 0

Query: 92  IEEWFYVPRDEEFSEIKQSSSQP-GNEKLLRKSPFSDLPELEIKTPSAASKFNLQFNIAS 151
           IEEWFYVPRDEEFSEIKQSSSQP GN+KLL K PFSDLPEL+I+TP AASK NLQFNI+S
Sbjct: 1   IEEWFYVPRDEEFSEIKQSSSQPDGNKKLLGKVPFSDLPELDIETPFAASKINLQFNISS 60

Query: 152 ILSSHRPPALKSSDTPSSTLVELPPLESYKSE 183
           ++SSHRPPAL SSD PSSTLVELPP ESYK +
Sbjct: 61  LVSSHRPPALSSSDVPSSTLVELPPPESYKRD 92

BLAST of CsGy4G013110 vs. TrEMBL
Match: tr|A0A0A0KX73|A0A0A0KX73_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G287550 PE=4 SV=1)

HSP 1 Score: 320.1 bits (819), Expect = 3.3e-84
Identity = 173/208 (83.17%), Postives = 174/208 (83.65%), Query Frame = 0

Query: 5   DEQPKEFIKCEAQLQEVDELVEYKKYKGDIKVAEGFGKIGAVIVELQDGVNERFVDTISV 64
           DEQPKEFIKCEAQLQEVDE VEYKKYKGDIKVAEGFGKIGAVIVELQDGVNERFVDTISV
Sbjct: 21  DEQPKEFIKCEAQLQEVDESVEYKKYKGDIKVAEGFGKIGAVIVELQDGVNERFVDTISV 80

Query: 65  EAEKPPISVTFSCKSLVQPK------------------------------DPASEKRIEE 124
           EAEKPPISVTFSCKS VQPK                              DPASEKRIEE
Sbjct: 81  EAEKPPISVTFSCKSWVQPKGLIDHRRIFFSSNKCRIYINGCVWPYNWDLDPASEKRIEE 140

Query: 125 WFYVPRDEEFSEIKQSSSQPGNEKLLRKSPFSDLPELEIKTPSAASKFNLQFNIASILSS 183
           WFYVPRDEEFSEIKQSSSQPGNEKLLRKSPFSDLPELEIKTPSAASKFNLQFNIASILSS
Sbjct: 141 WFYVPRDEEFSEIKQSSSQPGNEKLLRKSPFSDLPELEIKTPSAASKFNLQFNIASILSS 200

BLAST of CsGy4G013110 vs. TrEMBL
Match: tr|A0A0A0KZ89|A0A0A0KZ89_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G287020 PE=4 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 3.7e-35
Identity = 91/156 (58.33%), Postives = 113/156 (72.44%), Query Frame = 0

Query: 28  KKYKGDIKVAEGFGKIGAVIVELQDGVNERFVDTISVEAEKPPISVTFSCKSLVQPKDPA 87
           K ++  I V   FG+IGAVIVEL D V ERF+DTI+++ +K  + +TFSCKS VQPK+  
Sbjct: 57  KLFETSIDVPGDFGEIGAVIVELDDDVKERFIDTITIDFKKCTL-LTFSCKSWVQPKNKH 116

Query: 88  SEKRIEEWFYVPRDEEFSEIKQSSSQPGNEKLLRKSPFSDLPELEIKTPSAASKFN-LQF 147
           +E+RIE  FYVPRDE FSE KQ S    NE LL K+PFSDLPEL+IKTP AASK N L F
Sbjct: 117 AEERIEAPFYVPRDENFSEEKQGSVLAENEALLGKAPFSDLPELDIKTPFAASKINQLPF 176

Query: 148 NIASILSSHRPPALKSSDTPSSTLVELPPLESYKSE 183
           +I S++SS++PP L S D   S+ VELP  ESYK +
Sbjct: 177 DIPSLVSSNQPPPLNSLDDEPSSSVELPLPESYKRD 211

BLAST of CsGy4G013110 vs. TrEMBL
Match: tr|A0A1S3BNU6|A0A1S3BNU6_CUCME (lipoxygenase 2, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC103491676 PE=3 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 3.0e-32
Identity = 76/92 (82.61%), Postives = 83/92 (90.22%), Query Frame = 0

Query: 92  IEEWFYVPRDEEFSEIKQSSSQP-GNEKLLRKSPFSDLPELEIKTPSAASKFNLQFNIAS 151
           IEEWFYVPRDEEFSEIKQSSSQP GN+KLL K PFSDLPEL+I+TP AASK NLQFNI+S
Sbjct: 1   IEEWFYVPRDEEFSEIKQSSSQPDGNKKLLGKVPFSDLPELDIETPFAASKINLQFNISS 60

Query: 152 ILSSHRPPALKSSDTPSSTLVELPPLESYKSE 183
           ++SSHRPPAL SSD PSSTLVELPP ESYK +
Sbjct: 61  LVSSHRPPALSSSDVPSSTLVELPPPESYKRD 92

BLAST of CsGy4G013110 vs. TrEMBL
Match: tr|A0A0A0L1V1|A0A0A0L1V1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G286990 PE=4 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 3.3e-31
Identity = 72/88 (81.82%), Postives = 80/88 (90.91%), Query Frame = 0

Query: 5   DEQPKEFIKCEAQLQEVDELVEYKKYKGDIKVAEGFGKIGAVIVELQDGVNERFVDTISV 64
           +EQPKEFIKCEAQLQEVDELVEYKKY G+I VAEGFG+IGAVIVELQ+GVNERF+DTISV
Sbjct: 37  NEQPKEFIKCEAQLQEVDELVEYKKYIGEIVVAEGFGEIGAVIVELQEGVNERFIDTISV 96

Query: 65  EAEKPPISVTFSCKSLVQPKDPASEKRI 93
           EAE+PPIS+TFSCKS VQPK     +RI
Sbjct: 97  EAEEPPISITFSCKSWVQPKGLIDHRRI 124

BLAST of CsGy4G013110 vs. TrEMBL
Match: tr|A0A1S3BP51|A0A1S3BP51_CUCME (putative lipoxygenase 5 OS=Cucumis melo OX=3656 GN=LOC103491677 PE=4 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 4.3e-31
Identity = 72/86 (83.72%), Postives = 79/86 (91.86%), Query Frame = 0

Query: 7   QPKEFIKCEAQLQEVDELVEYKKYKGDIKVAEGFGKIGAVIVELQDGVNERFVDTISVEA 66
           QPKEFIKCEAQLQEVDE VEYKKYKG+IKVAEGFG+IGAVIVELQ+GVNERF+DTISV A
Sbjct: 39  QPKEFIKCEAQLQEVDESVEYKKYKGEIKVAEGFGEIGAVIVELQEGVNERFIDTISVVA 98

Query: 67  EKPPISVTFSCKSLVQPKDPASEKRI 93
           E+PPISVTFSCKS VQPK   + +RI
Sbjct: 99  EEPPISVTFSCKSWVQPKGLIAHRRI 124

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN54133.15.0e-8483.17hypothetical protein Csa_4G287550 [Cucumis sativus][more]
XP_011653578.12.5e-7561.87PREDICTED: LOW QUALITY PROTEIN: lipoxygenase 2, chloroplastic-like [Cucumis sati... [more]
XP_004142238.21.7e-6051.43PREDICTED: lipoxygenase 2, chloroplastic-like [Cucumis sativus][more]
KGN54129.15.6e-3558.33hypothetical protein Csa_4G287020 [Cucumis sativus][more]
XP_008449947.14.5e-3282.61PREDICTED: lipoxygenase 2, chloroplastic-like, partial [Cucumis melo][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A0A0KX73|A0A0A0KX73_CUCSA3.3e-8483.17Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G287550 PE=4 SV=1[more]
tr|A0A0A0KZ89|A0A0A0KZ89_CUCSA3.7e-3558.33Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G287020 PE=4 SV=1[more]
tr|A0A1S3BNU6|A0A1S3BNU6_CUCME3.0e-3282.61lipoxygenase 2, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC103491676 PE=3 ... [more]
tr|A0A0A0L1V1|A0A0A0L1V1_CUCSA3.3e-3181.82Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G286990 PE=4 SV=1[more]
tr|A0A1S3BP51|A0A1S3BP51_CUCME4.3e-3183.72putative lipoxygenase 5 OS=Cucumis melo OX=3656 GN=LOC103491677 PE=4 SV=1[more]
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0046872metal ion binding
GO:0016702oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
Vocabulary: Biological Process
TermDefinition
GO:0055114oxidation-reduction process
Vocabulary: INTERPRO
TermDefinition
IPR036392PLAT/LH2_dom_sf
IPR000907LipOase
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055114 oxidation-reduction process
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0046872 metal ion binding
molecular_function GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
molecular_function GO:0005515 protein binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy4G013110.1CsGy4G013110.1mRNA


Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3DG3DSA:2.60.60.20coord: 3..101
e-value: 8.7E-9
score: 37.3
NoneNo IPR availablePANTHERPTHR11771:SF65SUBFAMILY NOT NAMEDcoord: 9..92
NoneNo IPR availablePANTHERPTHR11771:SF65SUBFAMILY NOT NAMEDcoord: 84..111
IPR000907LipoxygenasePANTHERPTHR11771LIPOXYGENASEcoord: 9..92
IPR000907LipoxygenasePANTHERPTHR11771LIPOXYGENASEcoord: 84..111
IPR036392PLAT/LH2 domain superfamilySUPERFAMILYSSF49723Lipase/lipooxygenase domain (PLAT/LH2 domain)coord: 26..92