CsGy4G012340 (gene) Cucumber (Gy14) v2

Overview
NameCsGy4G012340
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
DescriptionReticulon-like protein
LocationChr4 : 16498854 .. 16499711 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTCGCAAAGCAGCCGTACGCGTCCAGATCTGCCGCCGTCCAGATCTGCACCGCAAGACCGCGTCGTTGCCCTTCCGCCGCTGCCCGGTCCAGATTTGCGTCGCCGTGCACAGCCTCACCGCCGCTGCAACCGTTTCCGCGTCTTGTTCTGTCTCCGTCGAAGCCTCACGTCGGCCTCACGTCGGCCGTCTTTCTGAATCGCCGTCGTCCCGTCAAGGTTGAAGTCGAAGAGCCAGTTCGCGTCGCGGGTCGCGTCGTCCCGTGTATTTTCCCTTTCTTCCAGCCGCCGCGTGACCCTCTGCTTTTCCAGCCGCCGCGAGATCCTTTACCTTTCAGCCGCCGCCTGTCTTTTTGTCTGTGAGATGGCTGGGACTTGTGTTAATTATTCATGATTTCAGGTTGCTCTTGCACTATGGATTGTGTCATTCATTGGCAGTTTCTTCAATTTTCTTACACTGGTTTATATTGGTGAGTTTTGTGGGGCCTTTGTTTATTTGTAATCAGCCGTTCGAATATCATAGCTGTTGTAGTTTATGCATTTTATCAAAATATTTTTGCAGGGGTCCTTCTCAGTCTTTCAGCTCCTATAGTGTATGACAAATACCAAGATCACATCGATGAAAAGTTGTGTGTAACACATAGATATGCACAGATGCAATACAAGAAGCTTGATTGTATCCATATGATCCATATGTTGTAGTGTACTCATCCTTGTAAGTTTTTCACTTTATCATATCTACAGGACTCTTTTGTTCTACTACGTCTACATGATTGTAGTGTACTCATCCTTGTAAGTTTTTCACTTTAATTGTAGCTTTGCTACTTAACTTATTTTATATATGGTTGGTAACATTGAAGT

mRNA sequence

TTCGCAAAGCAGCCGTACGCGTCCAGATCTGCCGCCGTCCAGATCTGCACCGCAAGACCGCGTCGTTGCCCTTCCGCCGCTGCCCGGTCCAGATTTGCGTCGCCGTGCACAGCCTCACCGCCGCTGCAACCGTTTCCGCGTCTTGTTCTGTCTCCGTCGAAGCCTCACGTCGGCCTCACGTCGGCCGTCTTTCTGAATCGCCGTCGTCCCGTCAAGGTTGAAGTCGAAGAGCCAGTTCGCGTCGCGGGTCGCGTCGTCCCCCGCCGCGTGACCCTCTGCTTTTCCAGCCGCCGCGAGATCCTTTACCTTTCAGCCGCCGCCTGTCTTTTTGTCTGTGAGATGGCTGGGACTTGTGTTGCTCTTGCACTATGGATTGTGTCATTCATTGGCAGTTTCTTCAATTTTCTTACACTGGTTTATATTGGGGTCCTTCTCAGTCTTTCAGCTCCTATAGTGTATGACAAATACCAAGATCACATCGATGAAAAGTTGTGTGTAACACATAGATATGCACAGATGCAATACAAGAAGCTTGATTGTATCCATATGATCCATATGTTGTAGTGTACTCATCCTTGTAAGTTTTTCACTTTATCATATCTACAGGACTCTTTTGTTCTACTACGTCTACATGATTGTAGTGTACTCATCCTTGTAAGTTTTTCACTTTAATTGTAGCTTTGCTACTTAACTTATTTTATATATGGTTGGTAACATTGAAGT

Coding sequence (CDS)

TTCGCAAAGCAGCCGTACGCGTCCAGATCTGCCGCCGTCCAGATCTGCACCGCAAGACCGCGTCGTTGCCCTTCCGCCGCTGCCCGGTCCAGATTTGCGTCGCCGTGCACAGCCTCACCGCCGCTGCAACCGTTTCCGCGTCTTGTTCTGTCTCCGTCGAAGCCTCACGTCGGCCTCACGTCGGCCGTCTTTCTGAATCGCCGTCGTCCCGTCAAGGTTGAAGTCGAAGAGCCAGTTCGCGTCGCGGGTCGCGTCGTCCCCCGCCGCGTGACCCTCTGCTTTTCCAGCCGCCGCGAGATCCTTTACCTTTCAGCCGCCGCCTGTCTTTTTGTCTGTGAGATGGCTGGGACTTGTGTTGCTCTTGCACTATGGATTGTGTCATTCATTGGCAGTTTCTTCAATTTTCTTACACTGGTTTATATTGGGGTCCTTCTCAGTCTTTCAGCTCCTATAGTGTATGACAAATACCAAGATCACATCGATGAAAAGTTGTGTGTAACACATAGATATGCACAGATGCAATACAAGAAGCTTGATTGTATCCATATGATCCATATGTTGTAG

Protein sequence

FAKQPYASRSAAVQICTARPRRCPSAAARSRFASPCTASPPLQPFPRLVLSPSKPHVGLTSAVFLNRRRPVKVEVEEPVRVAGRVVPRRVTLCFSSRREILYLSAAACLFVCEMAGTCVALALWIVSFIGSFFNFLTLVYIGVLLSLSAPIVYDKYQDHIDEKLCVTHRYAQMQYKKLDCIHMIHML
Homology
[Close]
BLAST of CsGy4G012340 vs. NCBI nr
Match: XP_008456165.1 (PREDICTED: reticulon-like protein B11 [Cucumis melo] >XP_008456167.1 PREDICTED: reticulon-like protein B11 [Cucumis melo])

HSP 1 Score: 120.2 bits (300), Expect = 7.7e-24
Identity = 60/61 (98.36%), Postives = 61/61 (100.00%), Query Frame = 0 

Query: 119 VALALWIVSFIGSFFNFLTLVYIGVLLSLSAPIVYDKYQDHIDEKLCVTHRYAQMQYKKL 178
           VALALWIVSFIGSFFNFLTLVYIGVLLSLSAPIVYDKYQDHIDEKLCVTHRYAQMQY+KL
Sbjct: 129 VALALWIVSFIGSFFNFLTLVYIGVLLSLSAPIVYDKYQDHIDEKLCVTHRYAQMQYRKL 188

Query: 179 D 180
           D
Sbjct: 189 D 189

[Close]
BLAST of CsGy4G012340 vs. NCBI nr
Match: XP_004140714.2 (PREDICTED: reticulon-like protein B11 [Cucumis sativus] >KGN57499.1 hypothetical protein Csa_3G199610 [Cucumis sativus])

HSP 1 Score: 120.2 bits (300), Expect = 7.7e-24
Identity = 60/61 (98.36%), Postives = 61/61 (100.00%), Query Frame = 0 

Query: 119 VALALWIVSFIGSFFNFLTLVYIGVLLSLSAPIVYDKYQDHIDEKLCVTHRYAQMQYKKL 178
           VALALWIVSFIGSFFNFLTLVYIGVLLSLSAPIVYDKYQDHIDEKLCVTHRYAQMQY+KL
Sbjct: 129 VALALWIVSFIGSFFNFLTLVYIGVLLSLSAPIVYDKYQDHIDEKLCVTHRYAQMQYRKL 188

Query: 179 D 180
           D
Sbjct: 189 D 189

[Close]
BLAST of CsGy4G012340 vs. NCBI nr
Match: XP_022922945.1 (reticulon-like protein B11 [Cucurbita moschata])

HSP 1 Score: 107.8 bits (268), Expect = 3.9e-20
Identity = 52/61 (85.25%), Postives = 57/61 (93.44%), Query Frame = 0 

Query: 119 VALALWIVSFIGSFFNFLTLVYIGVLLSLSAPIVYDKYQDHIDEKLCVTHRYAQMQYKKL 178
           VAL LWIVSFIGSFFNFLTLVYIG+LLSLSAP+VYDKYQDHI+EKLCV HRY QMQY+ L
Sbjct: 131 VALGLWIVSFIGSFFNFLTLVYIGILLSLSAPLVYDKYQDHINEKLCVAHRYVQMQYRML 190

Query: 179 D 180
           +
Sbjct: 191 N 191

[Close]
BLAST of CsGy4G012340 vs. NCBI nr
Match: XP_023552758.1 (reticulon-like protein B11 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 107.8 bits (268), Expect = 3.9e-20
Identity = 52/61 (85.25%), Postives = 57/61 (93.44%), Query Frame = 0 

Query: 119 VALALWIVSFIGSFFNFLTLVYIGVLLSLSAPIVYDKYQDHIDEKLCVTHRYAQMQYKKL 178
           VAL LWIVSFIGSFFNFLTLVYIG+LLSLSAP+VYDKYQDHI+EKLCV HRY QMQY+ L
Sbjct: 131 VALGLWIVSFIGSFFNFLTLVYIGILLSLSAPLVYDKYQDHINEKLCVAHRYVQMQYRML 190

Query: 179 D 180
           +
Sbjct: 191 N 191

[Close]
BLAST of CsGy4G012340 vs. NCBI nr
Match: XP_022941946.1 (reticulon-like protein B11 [Cucurbita moschata] >XP_022941947.1 reticulon-like protein B11 [Cucurbita moschata])

HSP 1 Score: 105.9 bits (263), Expect = 1.5e-19
Identity = 69/122 (56.56%), Postives = 78/122 (63.93%), Query Frame = 0 

Query: 61  SAVFLNRRRPVKVEV---EEPVRVAGRVVPRRVTLCFSSRREILYLSAAACLFVCEMAGT 120
           SA  LNR  P   ++   EE V +    +   V    S  R+I  +     LF+      
Sbjct: 76  SASLLNRPLPPLPDLEISEESVSIVADELRLWVNFALSIARDIA-IGRNLKLFL------ 135

Query: 121 CVALALWIVSFIGSFFNFLTLVYIGVLLSLSAPIVYDKYQDHIDEKLCVTHRYAQMQYKK 180
            VAL LWI SFIGSFFNFLTLVY GVLLSLSAP+VYDKYQD IDEKLCVTHRY QMQY+K
Sbjct: 136 QVALGLWISSFIGSFFNFLTLVYFGVLLSLSAPLVYDKYQDPIDEKLCVTHRYVQMQYRK 190

[Close]
BLAST of CsGy4G012340 vs. TAIR10
Match: AT2G15280.1 (Reticulon family protein)

HSP 1 Score: 77.8 bits (190), Expect = 7.9e-15
Identity = 51/122 (41.80%), Postives = 72/122 (59.02%), Query Frame = 0 

Query: 61  SAVFLNRRRP--VKVEV-EEPVRVAGRVVPRRVTLCFSSRREILYLSAAACLFVCEMAGT 120
           SA+  NR  P    +E+ EE V +    +   +    +  REI     A  LF       
Sbjct: 68  SAILFNRPMPQLPNLEITEEFVFMVADAIRVWINTVLAVAREIYVGRNAKQLF------- 127

Query: 121 CVALALWIVSFIGSFFNFLTLVYIGVLLSLSAPIVYDKYQDHIDEKLCVTHRYAQMQYKK 180
            V++ LW VSF+G+F NFLT++Y+GV+LSL  P +Y++YQD IDEKL +THR  Q QY+K
Sbjct: 128 RVSVVLWTVSFVGNFLNFLTILYLGVVLSLLIPFLYERYQDLIDEKLSLTHRVIQTQYRK 182

[Close]
BLAST of CsGy4G012340 vs. TAIR10
Match: AT3G19460.2 (Reticulon family protein)

HSP 1 Score: 70.9 bits (172), Expect = 9.7e-13
Identity = 34/54 (62.96%), Postives = 44/54 (81.48%), Query Frame = 0 

Query: 119 VALALWIVSFIGSFFNFLTLVYIGVLLSLSAPIVYDKYQDHIDEKLCVTHRYAQ 173
           V+L LW +S++G+  N LTLVYIGVLLSLS PIVY+KYQDHIDEK+  T ++ +
Sbjct: 148 VSLVLWAISYVGTLINSLTLVYIGVLLSLSFPIVYEKYQDHIDEKVNSTSKFVR 201

[Close]
BLAST of CsGy4G012340 vs. TAIR10
Match: AT4G23630.1 (VIRB2-interacting protein 1)

HSP 1 Score: 52.8 bits (125), Expect = 2.7e-07
Identity = 37/104 (35.58%), Postives = 55/104 (52.88%), Query Frame = 0 

Query: 61  SAVFLNRRRPVKVEV---EEPVRVAGRVVPRRVTLCFSSRREILYLSAAACLFVCEMAGT 120
           + +F+N+  P   EV   EEP+      +   +   FSS REI         F+  +AG 
Sbjct: 143 ATMFINKSPPKIPEVHIPEEPILQLASGLRIEINRGFSSLREIA-SGRDLKKFLIAIAG- 202

Query: 121 CVALALWIVSFIGSFFNFLTLVYIGVLLSLSAPIVYDKYQDHID 162
                LW++S +G  FNFLTL YI ++L  + P+ YDKY+D +D
Sbjct: 203 -----LWVLSILGGCFNFLTLAYIALVLLFTVPLAYDKYEDKVD 239

[Close]
BLAST of CsGy4G012340 vs. TAIR10
Match: AT3G10915.5 (Reticulon family protein)

HSP 1 Score: 52.4 bits (124), Expect = 3.6e-07
Identity = 25/61 (40.98%), Postives = 38/61 (62.30%), Query Frame = 0 

Query: 119 VALALWIVSFIGSFFNFLTLVYIGVLLSLSAPIVYDKYQDHIDEKLCVTHRYAQMQYKKL 178
           V + LW++S IGS+ +  TL+YIG +LS++ P +Y KYQ  +D+     HR     YK +
Sbjct: 172 VVICLWLLSAIGSYISLCTLLYIGTILSVTIPALYSKYQSKVDKCCGTIHRRLSHHYKIV 231

Query: 179 D 180
           D
Sbjct: 232 D 232

[Close]
BLAST of CsGy4G012340 vs. TAIR10
Match: AT2G46170.1 (Reticulon family protein)

HSP 1 Score: 48.9 bits (115), Expect = 3.9e-06
Identity = 24/61 (39.34%), Postives = 39/61 (63.93%), Query Frame = 0 

Query: 119 VALALWIVSFIGSFFNFLTLVYIGVLLSLSAPIVYDKYQDHIDEKLCVTHRYAQMQYKKL 178
           V + LWI+S +G++FNFLTLVYI  ++  + P++Y+K++D +D       +  Q QY   
Sbjct: 176 VVVGLWIISVVGNWFNFLTLVYICFVILHTVPMLYEKHEDKVDPLAEKAMKELQKQYVVF 235

Query: 179 D 180
           D
Sbjct: 236 D 236

[Close]
BLAST of CsGy4G012340 vs. Swiss-Prot
Match: sp|Q6NPD8|RTNLJ_ARATH (Reticulon-like protein B10 OS=Arabidopsis thaliana OX=3702 GN=RTNLB10 PE=2 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.4e-13
Identity = 51/122 (41.80%), Postives = 72/122 (59.02%), Query Frame = 0 

Query: 61  SAVFLNRRRP--VKVEV-EEPVRVAGRVVPRRVTLCFSSRREILYLSAAACLFVCEMAGT 120
           SA+  NR  P    +E+ EE V +    +   +    +  REI     A  LF       
Sbjct: 68  SAILFNRPMPQLPNLEITEEFVFMVADAIRVWINTVLAVAREIYVGRNAKQLF------- 127

Query: 121 CVALALWIVSFIGSFFNFLTLVYIGVLLSLSAPIVYDKYQDHIDEKLCVTHRYAQMQYKK 180
            V++ LW VSF+G+F NFLT++Y+GV+LSL  P +Y++YQD IDEKL +THR  Q QY+K
Sbjct: 128 RVSVVLWTVSFVGNFLNFLTILYLGVVLSLLIPFLYERYQDLIDEKLSLTHRVIQTQYRK 182

[Close]
BLAST of CsGy4G012340 vs. Swiss-Prot
Match: sp|Q9LT71|RTNLK_ARATH (Reticulon-like protein B11 OS=Arabidopsis thaliana OX=3702 GN=RTNLB11 PE=2 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 1.7e-11
Identity = 34/54 (62.96%), Postives = 44/54 (81.48%), Query Frame = 0 

Query: 119 VALALWIVSFIGSFFNFLTLVYIGVLLSLSAPIVYDKYQDHIDEKLCVTHRYAQ 173
           V+L LW +S++G+  N LTLVYIGVLLSLS PIVY+KYQDHIDEK+  T ++ +
Sbjct: 130 VSLVLWAISYVGTLINSLTLVYIGVLLSLSFPIVYEKYQDHIDEKVNSTSKFVR 183

[Close]
BLAST of CsGy4G012340 vs. Swiss-Prot
Match: sp|Q28D16|RTN3_XENTR (Reticulon-3 OS=Xenopus tropicalis OX=8364 GN=rtn3 PE=2 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 4.9e-06
Identity = 23/60 (38.33%), Postives = 44/60 (73.33%), Query Frame = 0 

Query: 119 VALALWIVSFIGSFFNFLTLVYIGVLLSLSAPIVYDKYQDHIDEKLCVTHRYAQMQYKKL 178
           +AL +W+++++G+ FN +TL+ +GVLL+ +APIVY+KY+  ID  + + H + +   +K+
Sbjct: 141 LALLMWLMTYVGAVFNGITLLILGVLLAFTAPIVYEKYKVQIDHYVSLVHSHVKSITEKI 200

[Close]
BLAST of CsGy4G012340 vs. Swiss-Prot
Match: sp|Q9SUR3|RTNLA_ARATH (Reticulon-like protein B1 OS=Arabidopsis thaliana OX=3702 GN=RTNLB1 PE=1 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 4.9e-06
Identity = 37/104 (35.58%), Postives = 55/104 (52.88%), Query Frame = 0 

Query: 61  SAVFLNRRRPVKVEV---EEPVRVAGRVVPRRVTLCFSSRREILYLSAAACLFVCEMAGT 120
           + +F+N+  P   EV   EEP+      +   +   FSS REI         F+  +AG 
Sbjct: 143 ATMFINKSPPKIPEVHIPEEPILQLASGLRIEINRGFSSLREIA-SGRDLKKFLIAIAG- 202

Query: 121 CVALALWIVSFIGSFFNFLTLVYIGVLLSLSAPIVYDKYQDHID 162
                LW++S +G  FNFLTL YI ++L  + P+ YDKY+D +D
Sbjct: 203 -----LWVLSILGGCFNFLTLAYIALVLLFTVPLAYDKYEDKVD 239

[Close]
BLAST of CsGy4G012340 vs. Swiss-Prot
Match: sp|Q8GYH6|RTNLP_ARATH (Reticulon-like protein B16 OS=Arabidopsis thaliana OX=3702 GN=RTNLB16 PE=2 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 6.4e-06
Identity = 25/61 (40.98%), Postives = 38/61 (62.30%), Query Frame = 0 

Query: 119 VALALWIVSFIGSFFNFLTLVYIGVLLSLSAPIVYDKYQDHIDEKLCVTHRYAQMQYKKL 178
           V + LW++S IGS+ +  TL+YIG +LS++ P +Y KYQ  +D+     HR     YK +
Sbjct: 149 VVICLWLLSAIGSYISLCTLLYIGTILSVTIPALYSKYQSKVDKCCGTIHRRLSHHYKIV 208

Query: 179 D 180
           D
Sbjct: 209 D 209

[Close]
BLAST of CsGy4G012340 vs. TrEMBL
Match: tr|A0A1S3C273|A0A1S3C273_CUCME (Reticulon-like protein OS=Cucumis melo OX=3656 GN=LOC103496185 PE=4 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 5.1e-24
Identity = 60/61 (98.36%), Postives = 61/61 (100.00%), Query Frame = 0 

Query: 119 VALALWIVSFIGSFFNFLTLVYIGVLLSLSAPIVYDKYQDHIDEKLCVTHRYAQMQYKKL 178
           VALALWIVSFIGSFFNFLTLVYIGVLLSLSAPIVYDKYQDHIDEKLCVTHRYAQMQY+KL
Sbjct: 129 VALALWIVSFIGSFFNFLTLVYIGVLLSLSAPIVYDKYQDHIDEKLCVTHRYAQMQYRKL 188

Query: 179 D 180
           D
Sbjct: 189 D 189

[Close]
BLAST of CsGy4G012340 vs. TrEMBL
Match: tr|A0A0A0L980|A0A0A0L980_CUCSA (Reticulon-like protein OS=Cucumis sativus OX=3659 GN=Csa_3G199610 PE=4 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 5.1e-24
Identity = 60/61 (98.36%), Postives = 61/61 (100.00%), Query Frame = 0 

Query: 119 VALALWIVSFIGSFFNFLTLVYIGVLLSLSAPIVYDKYQDHIDEKLCVTHRYAQMQYKKL 178
           VALALWIVSFIGSFFNFLTLVYIGVLLSLSAPIVYDKYQDHIDEKLCVTHRYAQMQY+KL
Sbjct: 129 VALALWIVSFIGSFFNFLTLVYIGVLLSLSAPIVYDKYQDHIDEKLCVTHRYAQMQYRKL 188

Query: 179 D 180
           D
Sbjct: 189 D 189

[Close]
BLAST of CsGy4G012340 vs. TrEMBL
Match: tr|A0A1Q3B3E1|A0A1Q3B3E1_CEPFO (Reticulon-like protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_05826 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 1.9e-18
Identity = 47/61 (77.05%), Postives = 53/61 (86.89%), Query Frame = 0 

Query: 119 VALALWIVSFIGSFFNFLTLVYIGVLLSLSAPIVYDKYQDHIDEKLCVTHRYAQMQYKKL 178
           VA  LW+ S+IGSFFNFLTL+YIGVLLSLS P++YDKYQDHIDEKLC THR  Q QYKK+
Sbjct: 129 VAFCLWVASYIGSFFNFLTLIYIGVLLSLSIPVLYDKYQDHIDEKLCATHRVIQTQYKKI 188

Query: 179 D 180
           D
Sbjct: 189 D 189

[Close]
BLAST of CsGy4G012340 vs. TrEMBL
Match: tr|A0A061E058|A0A061E058_THECC (Reticulon-like protein OS=Theobroma cacao OX=3641 GN=TCM_007136 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 2.3e-16
Identity = 45/61 (73.77%), Postives = 54/61 (88.52%), Query Frame = 0 

Query: 119 VALALWIVSFIGSFFNFLTLVYIGVLLSLSAPIVYDKYQDHIDEKLCVTHRYAQMQYKKL 178
           VA+ LW++S+IGS FNFLTLVYIGV+LSLS P+VYDKYQ HI+EKL VTHR  QMQY+K+
Sbjct: 175 VAVGLWLLSYIGSLFNFLTLVYIGVILSLSVPLVYDKYQHHINEKLSVTHRIIQMQYRKI 234

Query: 179 D 180
           D
Sbjct: 235 D 235

[Close]
BLAST of CsGy4G012340 vs. TrEMBL
Match: tr|D7UC00|D7UC00_VITVI (Reticulon-like protein OS=Vitis vinifera OX=29760 GN=VIT_03s0180g00170 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 2.3e-16
Identity = 62/122 (50.82%), Postives = 76/122 (62.30%), Query Frame = 0 

Query: 61  SAVFLNRRRPVKVEV---EEPVRVAGRVVPRRVTLCFSSRREILYLSAAACLFVCEMAGT 120
           SA  LNR  P   ++   EE V  A  V+   +    S  R+I  +     LF+      
Sbjct: 75  SASILNRPLPPLPDMEISEESVVKAADVIRVWINYALSVARDIA-VGRNVKLFL------ 134

Query: 121 CVALALWIVSFIGSFFNFLTLVYIGVLLSLSAPIVYDKYQDHIDEKLCVTHRYAQMQYKK 180
            VA  LW+VS+IGS FNFLTLVYIGV+LSLS P++YDKYQDHID+KL VTHR  Q QYKK
Sbjct: 135 QVAFGLWVVSYIGSLFNFLTLVYIGVVLSLSVPVLYDKYQDHIDDKLRVTHRVVQTQYKK 189

The following BLAST results are available for this feature:
BLAST of CsGy4G012340 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008456165.17.7e-2498.36PREDICTED: reticulon-like protein B11 [Cucumis melo] >XP_008456167.1 PREDICTED: ... [more]
XP_004140714.27.7e-2498.36PREDICTED: reticulon-like protein B11 [Cucumis sativus] >KGN57499.1 hypothetical... [more]
XP_022922945.13.9e-2085.25reticulon-like protein B11 [Cucurbita moschata][more]
XP_023552758.13.9e-2085.25reticulon-like protein B11 [Cucurbita pepo subsp. pepo][more]
XP_022941946.11.5e-1956.56reticulon-like protein B11 [Cucurbita moschata] >XP_022941947.1 reticulon-like p... [more]
BLAST of CsGy4G012340 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G15280.17.9e-1541.80Reticulon family protein[more]
AT3G19460.29.7e-1362.96Reticulon family protein[more]
AT4G23630.12.7e-0735.58VIRB2-interacting protein 1[more]
AT3G10915.53.6e-0740.98Reticulon family protein[more]
AT2G46170.13.9e-0639.34Reticulon family protein[more]
BLAST of CsGy4G012340 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q6NPD8|RTNLJ_ARATH1.4e-1341.80Reticulon-like protein B10 OS=Arabidopsis thaliana OX=3702 GN=RTNLB10 PE=2 SV=1[more]
sp|Q9LT71|RTNLK_ARATH1.7e-1162.96Reticulon-like protein B11 OS=Arabidopsis thaliana OX=3702 GN=RTNLB11 PE=2 SV=1[more]
sp|Q28D16|RTN3_XENTR4.9e-0638.33Reticulon-3 OS=Xenopus tropicalis OX=8364 GN=rtn3 PE=2 SV=1[more]
sp|Q9SUR3|RTNLA_ARATH4.9e-0635.58Reticulon-like protein B1 OS=Arabidopsis thaliana OX=3702 GN=RTNLB1 PE=1 SV=1[more]
sp|Q8GYH6|RTNLP_ARATH6.4e-0640.98Reticulon-like protein B16 OS=Arabidopsis thaliana OX=3702 GN=RTNLB16 PE=2 SV=1[more]
BLAST of CsGy4G012340 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3C273|A0A1S3C273_CUCME5.1e-2498.36Reticulon-like protein OS=Cucumis melo OX=3656 GN=LOC103496185 PE=4 SV=1[more]
tr|A0A0A0L980|A0A0A0L980_CUCSA5.1e-2498.36Reticulon-like protein OS=Cucumis sativus OX=3659 GN=Csa_3G199610 PE=4 SV=1[more]
tr|A0A1Q3B3E1|A0A1Q3B3E1_CEPFO1.9e-1877.05Reticulon-like protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_05826 PE=4 ... [more]
tr|A0A061E058|A0A061E058_THECC2.3e-1673.77Reticulon-like protein OS=Theobroma cacao OX=3641 GN=TCM_007136 PE=4 SV=1[more]
tr|D7UC00|D7UC00_VITVI2.3e-1650.82Reticulon-like protein OS=Vitis vinifera OX=29760 GN=VIT_03s0180g00170 PE=4 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR003388Reticulon
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005789 endoplasmic reticulum membrane
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy4G012340.1CsGy4G012340.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003388ReticulonPFAMPF02453Reticuloncoord: 119..164
e-value: 1.3E-14
score: 54.4
IPR003388ReticulonPROSITEPS50845RETICULONcoord: 119..178
score: 17.663
NoneNo IPR availablePANTHERPTHR10994:SF125SUBFAMILY NOT NAMEDcoord: 119..179
NoneNo IPR availablePANTHERPTHR10994RETICULONcoord: 119..179

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsGy4G012340Cucurbita maxima (Rimu)cgybcmaB525
CsGy4G012340Cucurbita maxima (Rimu)cgybcmaB522
CsGy4G012340Cucurbita moschata (Rifu)cgybcmoB493
CsGy4G012340Cucurbita moschata (Rifu)cgybcmoB496
CsGy4G012340Cucurbita pepo (Zucchini)cgybcpeB496
CsGy4G012340Cucurbita pepo (Zucchini)cgybcpeB561
CsGy4G012340Cucumber (Chinese Long) v2cgybcuB167
CsGy4G012340Bottle gourd (USVL1VR-Ls)cgyblsiB232
CsGy4G012340Melon (DHL92) v3.5.1cgybmeB249
CsGy4G012340Watermelon (Charleston Gray)cgybwcgB272
CsGy4G012340Watermelon (97103) v1cgybwmB323
CsGy4G012340Wild cucumber (PI 183967)cgybcpiB170
CsGy4G012340Silver-seed gourdcarcgybB0529
CsGy4G012340Cucumber (Chinese Long) v3cgybcucB171