CsGy4G012340 (gene) Cucumber (Gy14) v2

Overview
NameCsGy4G012340
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
DescriptionReticulon-like protein
LocationChr4 : 16498854 .. 16499711 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTCGCAAAGCAGCCGTACGCGTCCAGATCTGCCGCCGTCCAGATCTGCACCGCAAGACCGCGTCGTTGCCCTTCCGCCGCTGCCCGGTCCAGATTTGCGTCGCCGTGCACAGCCTCACCGCCGCTGCAACCGTTTCCGCGTCTTGTTCTGTCTCCGTCGAAGCCTCACGTCGGCCTCACGTCGGCCGTCTTTCTGAATCGCCGTCGTCCCGTCAAGGTTGAAGTCGAAGAGCCAGTTCGCGTCGCGGGTCGCGTCGTCCCGTGTATTTTCCCTTTCTTCCAGCCGCCGCGTGACCCTCTGCTTTTCCAGCCGCCGCGAGATCCTTTACCTTTCAGCCGCCGCCTGTCTTTTTGTCTGTGAGATGGCTGGGACTTGTGTTAATTATTCATGATTTCAGGTTGCTCTTGCACTATGGATTGTGTCATTCATTGGCAGTTTCTTCAATTTTCTTACACTGGTTTATATTGGTGAGTTTTGTGGGGCCTTTGTTTATTTGTAATCAGCCGTTCGAATATCATAGCTGTTGTAGTTTATGCATTTTATCAAAATATTTTTGCAGGGGTCCTTCTCAGTCTTTCAGCTCCTATAGTGTATGACAAATACCAAGATCACATCGATGAAAAGTTGTGTGTAACACATAGATATGCACAGATGCAATACAAGAAGCTTGATTGTATCCATATGATCCATATGTTGTAGTGTACTCATCCTTGTAAGTTTTTCACTTTATCATATCTACAGGACTCTTTTGTTCTACTACGTCTACATGATTGTAGTGTACTCATCCTTGTAAGTTTTTCACTTTAATTGTAGCTTTGCTACTTAACTTATTTTATATATGGTTGGTAACATTGAAGT

mRNA sequence

TTCGCAAAGCAGCCGTACGCGTCCAGATCTGCCGCCGTCCAGATCTGCACCGCAAGACCGCGTCGTTGCCCTTCCGCCGCTGCCCGGTCCAGATTTGCGTCGCCGTGCACAGCCTCACCGCCGCTGCAACCGTTTCCGCGTCTTGTTCTGTCTCCGTCGAAGCCTCACGTCGGCCTCACGTCGGCCGTCTTTCTGAATCGCCGTCGTCCCGTCAAGGTTGAAGTCGAAGAGCCAGTTCGCGTCGCGGGTCGCGTCGTCCCCCGCCGCGTGACCCTCTGCTTTTCCAGCCGCCGCGAGATCCTTTACCTTTCAGCCGCCGCCTGTCTTTTTGTCTGTGAGATGGCTGGGACTTGTGTTGCTCTTGCACTATGGATTGTGTCATTCATTGGCAGTTTCTTCAATTTTCTTACACTGGTTTATATTGGGGTCCTTCTCAGTCTTTCAGCTCCTATAGTGTATGACAAATACCAAGATCACATCGATGAAAAGTTGTGTGTAACACATAGATATGCACAGATGCAATACAAGAAGCTTGATTGTATCCATATGATCCATATGTTGTAGTGTACTCATCCTTGTAAGTTTTTCACTTTATCATATCTACAGGACTCTTTTGTTCTACTACGTCTACATGATTGTAGTGTACTCATCCTTGTAAGTTTTTCACTTTAATTGTAGCTTTGCTACTTAACTTATTTTATATATGGTTGGTAACATTGAAGT

Coding sequence (CDS)

TTCGCAAAGCAGCCGTACGCGTCCAGATCTGCCGCCGTCCAGATCTGCACCGCAAGACCGCGTCGTTGCCCTTCCGCCGCTGCCCGGTCCAGATTTGCGTCGCCGTGCACAGCCTCACCGCCGCTGCAACCGTTTCCGCGTCTTGTTCTGTCTCCGTCGAAGCCTCACGTCGGCCTCACGTCGGCCGTCTTTCTGAATCGCCGTCGTCCCGTCAAGGTTGAAGTCGAAGAGCCAGTTCGCGTCGCGGGTCGCGTCGTCCCCCGCCGCGTGACCCTCTGCTTTTCCAGCCGCCGCGAGATCCTTTACCTTTCAGCCGCCGCCTGTCTTTTTGTCTGTGAGATGGCTGGGACTTGTGTTGCTCTTGCACTATGGATTGTGTCATTCATTGGCAGTTTCTTCAATTTTCTTACACTGGTTTATATTGGGGTCCTTCTCAGTCTTTCAGCTCCTATAGTGTATGACAAATACCAAGATCACATCGATGAAAAGTTGTGTGTAACACATAGATATGCACAGATGCAATACAAGAAGCTTGATTGTATCCATATGATCCATATGTTGTAG

Protein sequence

FAKQPYASRSAAVQICTARPRRCPSAAARSRFASPCTASPPLQPFPRLVLSPSKPHVGLTSAVFLNRRRPVKVEVEEPVRVAGRVVPRRVTLCFSSRREILYLSAAACLFVCEMAGTCVALALWIVSFIGSFFNFLTLVYIGVLLSLSAPIVYDKYQDHIDEKLCVTHRYAQMQYKKLDCIHMIHML
Homology
[Close]
BLAST of CsGy4G012340 vs. NCBI nr
Match: XP_008456165.1 (PREDICTED: reticulon-like protein B11 [Cucumis melo] >XP_008456167.1 PREDICTED: reticulon-like protein B11 [Cucumis melo])

HSP 1 Score: 120.2 bits (300), Expect = 7.7e-24
Identity = 60/61 (98.36%), Postives = 61/61 (100.00%), Query Frame = 0 

Query: 119 VALALWIVSFIGSFFNFLTLVYIGVLLSLSAPIVYDKYQDHIDEKLCVTHRYAQMQYKKL 178
           VALALWIVSFIGSFFNFLTLVYIGVLLSLSAPIVYDKYQDHIDEKLCVTHRYAQMQY+KL
Sbjct: 129 VALALWIVSFIGSFFNFLTLVYIGVLLSLSAPIVYDKYQDHIDEKLCVTHRYAQMQYRKL 188

Query: 179 D 180
           D
Sbjct: 189 D 189

[Close]
BLAST of CsGy4G012340 vs. NCBI nr
Match: XP_004140714.2 (PREDICTED: reticulon-like protein B11 [Cucumis sativus] >KGN57499.1 hypothetical protein Csa_3G199610 [Cucumis sativus])

HSP 1 Score: 120.2 bits (300), Expect = 7.7e-24
Identity = 60/61 (98.36%), Postives = 61/61 (100.00%), Query Frame = 0 

Query: 119 VALALWIVSFIGSFFNFLTLVYIGVLLSLSAPIVYDKYQDHIDEKLCVTHRYAQMQYKKL 178
           VALALWIVSFIGSFFNFLTLVYIGVLLSLSAPIVYDKYQDHIDEKLCVTHRYAQMQY+KL
Sbjct: 129 VALALWIVSFIGSFFNFLTLVYIGVLLSLSAPIVYDKYQDHIDEKLCVTHRYAQMQYRKL 188

Query: 179 D 180
           D
Sbjct: 189 D 189

[Close]
BLAST of CsGy4G012340 vs. NCBI nr
Match: XP_022922945.1 (reticulon-like protein B11 [Cucurbita moschata])

HSP 1 Score: 107.8 bits (268), Expect = 3.9e-20
Identity = 52/61 (85.25%), Postives = 57/61 (93.44%), Query Frame = 0 

Query: 119 VALALWIVSFIGSFFNFLTLVYIGVLLSLSAPIVYDKYQDHIDEKLCVTHRYAQMQYKKL 178
           VAL LWIVSFIGSFFNFLTLVYIG+LLSLSAP+VYDKYQDHI+EKLCV HRY QMQY+ L
Sbjct: 131 VALGLWIVSFIGSFFNFLTLVYIGILLSLSAPLVYDKYQDHINEKLCVAHRYVQMQYRML 190

Query: 179 D 180
           +
Sbjct: 191 N 191

[Close]
BLAST of CsGy4G012340 vs. NCBI nr
Match: XP_023552758.1 (reticulon-like protein B11 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 107.8 bits (268), Expect = 3.9e-20
Identity = 52/61 (85.25%), Postives = 57/61 (93.44%), Query Frame = 0 

Query: 119 VALALWIVSFIGSFFNFLTLVYIGVLLSLSAPIVYDKYQDHIDEKLCVTHRYAQMQYKKL 178
           VAL LWIVSFIGSFFNFLTLVYIG+LLSLSAP+VYDKYQDHI+EKLCV HRY QMQY+ L
Sbjct: 131 VALGLWIVSFIGSFFNFLTLVYIGILLSLSAPLVYDKYQDHINEKLCVAHRYVQMQYRML 190

Query: 179 D 180
           +
Sbjct: 191 N 191

[Close]
BLAST of CsGy4G012340 vs. NCBI nr
Match: XP_022941946.1 (reticulon-like protein B11 [Cucurbita moschata] >XP_022941947.1 reticulon-like protein B11 [Cucurbita moschata])

HSP 1 Score: 105.9 bits (263), Expect = 1.5e-19
Identity = 69/122 (56.56%), Postives = 78/122 (63.93%), Query Frame = 0 

Query: 61  SAVFLNRRRPVKVEV---EEPVRVAGRVVPRRVTLCFSSRREILYLSAAACLFVCEMAGT 120
           SA  LNR  P   ++   EE V +    +   V    S  R+I  +     LF+      
Sbjct: 76  SASLLNRPLPPLPDLEISEESVSIVADELRLWVNFALSIARDIA-IGRNLKLFL------ 135

Query: 121 CVALALWIVSFIGSFFNFLTLVYIGVLLSLSAPIVYDKYQDHIDEKLCVTHRYAQMQYKK 180
            VAL LWI SFIGSFFNFLTLVY GVLLSLSAP+VYDKYQD IDEKLCVTHRY QMQY+K
Sbjct: 136 QVALGLWISSFIGSFFNFLTLVYFGVLLSLSAPLVYDKYQDPIDEKLCVTHRYVQMQYRK 190

[Close]
BLAST of CsGy4G012340 vs. TAIR10
Match: AT2G15280.1 (Reticulon family protein)

HSP 1 Score: 77.8 bits (190), Expect = 7.9e-15
Identity = 51/122 (41.80%), Postives = 72/122 (59.02%), Query Frame = 0 

Query: 61  SAVFLNRRRP--VKVEV-EEPVRVAGRVVPRRVTLCFSSRREILYLSAAACLFVCEMAGT 120
           SA+  NR  P    +E+ EE V +    +   +    +  REI     A  LF       
Sbjct: 68  SAILFNRPMPQLPNLEITEEFVFMVADAIRVWINTVLAVAREIYVGRNAKQLF------- 127

Query: 121 CVALALWIVSFIGSFFNFLTLVYIGVLLSLSAPIVYDKYQDHIDEKLCVTHRYAQMQYKK 180
            V++ LW VSF+G+F NFLT++Y+GV+LSL  P +Y++YQD IDEKL +THR  Q QY+K
Sbjct: 128 RVSVVLWTVSFVGNFLNFLTILYLGVVLSLLIPFLYERYQDLIDEKLSLTHRVIQTQYRK 182

[Close]
BLAST of CsGy4G012340 vs. TAIR10
Match: AT3G19460.2 (Reticulon family protein)

HSP 1 Score: 70.9 bits (172), Expect = 9.7e-13
Identity = 34/54 (62.96%), Postives = 44/54 (81.48%), Query Frame = 0 

Query: 119 VALALWIVSFIGSFFNFLTLVYIGVLLSLSAPIVYDKYQDHIDEKLCVTHRYAQ 173
           V+L LW +S++G+  N LTLVYIGVLLSLS PIVY+KYQDHIDEK+  T ++ +
Sbjct: 148 VSLVLWAISYVGTLINSLTLVYIGVLLSLSFPIVYEKYQDHIDEKVNSTSKFVR 201

[Close]
BLAST of CsGy4G012340 vs. TAIR10
Match: AT4G23630.1 (VIRB2-interacting protein 1)

HSP 1 Score: 52.8 bits (125), Expect = 2.7e-07
Identity = 37/104 (35.58%), Postives = 55/104 (52.88%), Query Frame = 0 

Query: 61  SAVFLNRRRPVKVEV---EEPVRVAGRVVPRRVTLCFSSRREILYLSAAACLFVCEMAGT 120
           + +F+N+  P   EV   EEP+      +   +   FSS REI         F+  +AG 
Sbjct: 143 ATMFINKSPPKIPEVHIPEEPILQLASGLRIEINRGFSSLREIA-SGRDLKKFLIAIAG- 202

Query: 121 CVALALWIVSFIGSFFNFLTLVYIGVLLSLSAPIVYDKYQDHID 162
                LW++S +G  FNFLTL YI ++L  + P+ YDKY+D +D
Sbjct: 203 -----LWVLSILGGCFNFLTLAYIALVLLFTVPLAYDKYEDKVD 239

[Close]
BLAST of CsGy4G012340 vs. TAIR10
Match: AT3G10915.5 (Reticulon family protein)

HSP 1 Score: 52.4 bits (124), Expect = 3.6e-07
Identity = 25/61 (40.98%), Postives = 38/61 (62.30%), Query Frame = 0 

Query: 119 VALALWIVSFIGSFFNFLTLVYIGVLLSLSAPIVYDKYQDHIDEKLCVTHRYAQMQYKKL 178
           V + LW++S IGS+ +  TL+YIG +LS++ P +Y KYQ  +D+     HR     YK +
Sbjct: 172 VVICLWLLSAIGSYISLCTLLYIGTILSVTIPALYSKYQSKVDKCCGTIHRRLSHHYKIV 231

Query: 179 D 180
           D
Sbjct: 232 D 232

[Close]
BLAST of CsGy4G012340 vs. TAIR10
Match: AT2G46170.1 (Reticulon family protein)

HSP 1 Score: 48.9 bits (115), Expect = 3.9e-06
Identity = 24/61 (39.34%), Postives = 39/61 (63.93%), Query Frame = 0 

Query: 119 VALALWIVSFIGSFFNFLTLVYIGVLLSLSAPIVYDKYQDHIDEKLCVTHRYAQMQYKKL 178
           V + LWI+S +G++FNFLTLVYI  ++  + P++Y+K++D +D       +  Q QY   
Sbjct: 176 VVVGLWIISVVGNWFNFLTLVYICFVILHTVPMLYEKHEDKVDPLAEKAMKELQKQYVVF 235

Query: 179 D 180
           D
Sbjct: 236 D 236

[Close]
BLAST of CsGy4G012340 vs. Swiss-Prot
Match: sp|Q6NPD8|RTNLJ_ARATH (Reticulon-like protein B10 OS=Arabidopsis thaliana OX=3702 GN=RTNLB10 PE=2 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.4e-13
Identity = 51/122 (41.80%), Postives = 72/122 (59.02%), Query Frame = 0 

Query: 61  SAVFLNRRRP--VKVEV-EEPVRVAGRVVPRRVTLCFSSRREILYLSAAACLFVCEMAGT 120
           SA+  NR  P    +E+ EE V +    +   +    +  REI     A  LF       
Sbjct: 68  SAILFNRPMPQLPNLEITEEFVFMVADAIRVWINTVLAVAREIYVGRNAKQLF------- 127

Query: 121 CVALALWIVSFIGSFFNFLTLVYIGVLLSLSAPIVYDKYQDHIDEKLCVTHRYAQMQYKK 180
            V++ LW VSF+G+F NFLT++Y+GV+LSL  P +Y++YQD IDEKL +THR  Q QY+K
Sbjct: 128 RVSVVLWTVSFVGNFLNFLTILYLGVVLSLLIPFLYERYQDLIDEKLSLTHRVIQTQYRK 182

[Close]
BLAST of CsGy4G012340 vs. Swiss-Prot
Match: sp|Q9LT71|RTNLK_ARATH (Reticulon-like protein B11 OS=Arabidopsis thaliana OX=3702 GN=RTNLB11 PE=2 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 1.7e-11
Identity = 34/54 (62.96%), Postives = 44/54 (81.48%), Query Frame = 0 

Query: 119 VALALWIVSFIGSFFNFLTLVYIGVLLSLSAPIVYDKYQDHIDEKLCVTHRYAQ 173
           V+L LW +S++G+  N LTLVYIGVLLSLS PIVY+KYQDHIDEK+  T ++ +
Sbjct: 130 VSLVLWAISYVGTLINSLTLVYIGVLLSLSFPIVYEKYQDHIDEKVNSTSKFVR 183

[Close]
BLAST of CsGy4G012340 vs. Swiss-Prot
Match: sp|Q28D16|RTN3_XENTR (Reticulon-3 OS=Xenopus tropicalis OX=8364 GN=rtn3 PE=2 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 4.9e-06
Identity = 23/60 (38.33%), Postives = 44/60 (73.33%), Query Frame = 0 

Query: 119 VALALWIVSFIGSFFNFLTLVYIGVLLSLSAPIVYDKYQDHIDEKLCVTHRYAQMQYKKL 178
           +AL +W+++++G+ FN +TL+ +GVLL+ +APIVY+KY+  ID  + + H + +   +K+
Sbjct: 141 LALLMWLMTYVGAVFNGITLLILGVLLAFTAPIVYEKYKVQIDHYVSLVHSHVKSITEKI 200

[Close]
BLAST of CsGy4G012340 vs. Swiss-Prot
Match: sp|Q9SUR3|RTNLA_ARATH (Reticulon-like protein B1 OS=Arabidopsis thaliana OX=3702 GN=RTNLB1 PE=1 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 4.9e-06
Identity = 37/104 (35.58%), Postives = 55/104 (52.88%), Query Frame = 0 

Query: 61  SAVFLNRRRPVKVEV---EEPVRVAGRVVPRRVTLCFSSRREILYLSAAACLFVCEMAGT 120
           + +F+N+  P   EV   EEP+      +   +   FSS REI         F+  +AG 
Sbjct: 143 ATMFINKSPPKIPEVHIPEEPILQLASGLRIEINRGFSSLREIA-SGRDLKKFLIAIAG- 202

Query: 121 CVALALWIVSFIGSFFNFLTLVYIGVLLSLSAPIVYDKYQDHID 162
                LW++S +G  FNFLTL YI ++L  + P+ YDKY+D +D
Sbjct: 203 -----LWVLSILGGCFNFLTLAYIALVLLFTVPLAYDKYEDKVD 239

[Close]
BLAST of CsGy4G012340 vs. Swiss-Prot
Match: sp|Q8GYH6|RTNLP_ARATH (Reticulon-like protein B16 OS=Arabidopsis thaliana OX=3702 GN=RTNLB16 PE=2 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 6.4e-06
Identity = 25/61 (40.98%), Postives = 38/61 (62.30%), Query Frame = 0 

Query: 119 VALALWIVSFIGSFFNFLTLVYIGVLLSLSAPIVYDKYQDHIDEKLCVTHRYAQMQYKKL 178
           V + LW++S IGS+ +  TL+YIG +LS++ P +Y KYQ  +D+     HR     YK +
Sbjct: 149 VVICLWLLSAIGSYISLCTLLYIGTILSVTIPALYSKYQSKVDKCCGTIHRRLSHHYKIV 208

Query: 179 D 180
           D
Sbjct: 209 D 209

[Close]
BLAST of CsGy4G012340 vs. TrEMBL
Match: tr|A0A1S3C273|A0A1S3C273_CUCME (Reticulon-like protein OS=Cucumis melo OX=3656 GN=LOC103496185 PE=4 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 5.1e-24
Identity = 60/61 (98.36%), Postives = 61/61 (100.00%), Query Frame = 0 

Query: 119 VALALWIVSFIGSFFNFLTLVYIGVLLSLSAPIVYDKYQDHIDEKLCVTHRYAQMQYKKL 178
           VALALWIVSFIGSFFNFLTLVYIGVLLSLSAPIVYDKYQDHIDEKLCVTHRYAQMQY+KL
Sbjct: 129 VALALWIVSFIGSFFNFLTLVYIGVLLSLSAPIVYDKYQDHIDEKLCVTHRYAQMQYRKL 188

Query: 179 D 180
           D
Sbjct: 189 D 189

[Close]
BLAST of CsGy4G012340 vs. TrEMBL
Match: tr|A0A0A0L980|A0A0A0L980_CUCSA (Reticulon-like protein OS=Cucumis sativus OX=3659 GN=Csa_3G199610 PE=4 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 5.1e-24
Identity = 60/61 (98.36%), Postives = 61/61 (100.00%), Query Frame = 0 

Query: 119 VALALWIVSFIGSFFNFLTLVYIGVLLSLSAPIVYDKYQDHIDEKLCVTHRYAQMQYKKL 178
           VALALWIVSFIGSFFNFLTLVYIGVLLSLSAPIVYDKYQDHIDEKLCVTHRYAQMQY+KL
Sbjct: 129 VALALWIVSFIGSFFNFLTLVYIGVLLSLSAPIVYDKYQDHIDEKLCVTHRYAQMQYRKL 188

Query: 179 D 180
           D
Sbjct: 189 D 189

[Close]
BLAST of CsGy4G012340 vs. TrEMBL
Match: tr|A0A1Q3B3E1|A0A1Q3B3E1_CEPFO (Reticulon-like protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_05826 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 1.9e-18
Identity = 47/61 (77.05%), Postives = 53/61 (86.89%), Query Frame = 0 

Query: 119 VALALWIVSFIGSFFNFLTLVYIGVLLSLSAPIVYDKYQDHIDEKLCVTHRYAQMQYKKL 178
           VA  LW+ S+IGSFFNFLTL+YIGVLLSLS P++YDKYQDHIDEKLC THR  Q QYKK+
Sbjct: 129 VAFCLWVASYIGSFFNFLTLIYIGVLLSLSIPVLYDKYQDHIDEKLCATHRVIQTQYKKI 188

Query: 179 D 180
           D
Sbjct: 189 D 189

[Close]
BLAST of CsGy4G012340 vs. TrEMBL
Match: tr|A0A061E058|A0A061E058_THECC (Reticulon-like protein OS=Theobroma cacao OX=3641 GN=TCM_007136 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 2.3e-16
Identity = 45/61 (73.77%), Postives = 54/61 (88.52%), Query Frame = 0 

Query: 119 VALALWIVSFIGSFFNFLTLVYIGVLLSLSAPIVYDKYQDHIDEKLCVTHRYAQMQYKKL 178
           VA+ LW++S+IGS FNFLTLVYIGV+LSLS P+VYDKYQ HI+EKL VTHR  QMQY+K+
Sbjct: 175 VAVGLWLLSYIGSLFNFLTLVYIGVILSLSVPLVYDKYQHHINEKLSVTHRIIQMQYRKI 234

Query: 179 D 180
           D
Sbjct: 235 D 235

[Close]
BLAST of CsGy4G012340 vs. TrEMBL
Match: tr|D7UC00|D7UC00_VITVI (Reticulon-like protein OS=Vitis vinifera OX=29760 GN=VIT_03s0180g00170 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 2.3e-16
Identity = 62/122 (50.82%), Postives = 76/122 (62.30%), Query Frame = 0 

Query: 61  SAVFLNRRRPVKVEV---EEPVRVAGRVVPRRVTLCFSSRREILYLSAAACLFVCEMAGT 120
           SA  LNR  P   ++   EE V  A  V+   +    S  R+I  +     LF+      
Sbjct: 75  SASILNRPLPPLPDMEISEESVVKAADVIRVWINYALSVARDIA-VGRNVKLFL------ 134

Query: 121 CVALALWIVSFIGSFFNFLTLVYIGVLLSLSAPIVYDKYQDHIDEKLCVTHRYAQMQYKK 180
            VA  LW+VS+IGS FNFLTLVYIGV+LSLS P++YDKYQDHID+KL VTHR  Q QYKK
Sbjct: 135 QVAFGLWVVSYIGSLFNFLTLVYIGVVLSLSVPVLYDKYQDHIDDKLRVTHRVVQTQYKK 189

The following BLAST results are available for this feature:
BLAST of CsGy4G012340 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008456165.17.7e-2498.36PREDICTED: reticulon-like protein B11 [Cucumis melo] >XP_008456167.1 PREDICTED: ... [more]
XP_004140714.27.7e-2498.36PREDICTED: reticulon-like protein B11 [Cucumis sativus] >KGN57499.1 hypothetical... [more]
XP_022922945.13.9e-2085.25reticulon-like protein B11 [Cucurbita moschata][more]
XP_023552758.13.9e-2085.25reticulon-like protein B11 [Cucurbita pepo subsp. pepo][more]
XP_022941946.11.5e-1956.56reticulon-like protein B11 [Cucurbita moschata] >XP_022941947.1 reticulon-like p... [more]
BLAST of CsGy4G012340 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G15280.17.9e-1541.80Reticulon family protein[more]
AT3G19460.29.7e-1362.96Reticulon family protein[more]
AT4G23630.12.7e-0735.58VIRB2-interacting protein 1[more]
AT3G10915.53.6e-0740.98Reticulon family protein[more]
AT2G46170.13.9e-0639.34Reticulon family protein[more]
BLAST of CsGy4G012340 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q6NPD8|RTNLJ_ARATH1.4e-1341.80Reticulon-like protein B10 OS=Arabidopsis thaliana OX=3702 GN=RTNLB10 PE=2 SV=1[more]
sp|Q9LT71|RTNLK_ARATH1.7e-1162.96Reticulon-like protein B11 OS=Arabidopsis thaliana OX=3702 GN=RTNLB11 PE=2 SV=1[more]
sp|Q28D16|RTN3_XENTR4.9e-0638.33Reticulon-3 OS=Xenopus tropicalis OX=8364 GN=rtn3 PE=2 SV=1[more]
sp|Q9SUR3|RTNLA_ARATH4.9e-0635.58Reticulon-like protein B1 OS=Arabidopsis thaliana OX=3702 GN=RTNLB1 PE=1 SV=1[more]
sp|Q8GYH6|RTNLP_ARATH6.4e-0640.98Reticulon-like protein B16 OS=Arabidopsis thaliana OX=3702 GN=RTNLB16 PE=2 SV=1[more]
BLAST of CsGy4G012340 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3C273|A0A1S3C273_CUCME5.1e-2498.36Reticulon-like protein OS=Cucumis melo OX=3656 GN=LOC103496185 PE=4 SV=1[more]
tr|A0A0A0L980|A0A0A0L980_CUCSA5.1e-2498.36Reticulon-like protein OS=Cucumis sativus OX=3659 GN=Csa_3G199610 PE=4 SV=1[more]
tr|A0A1Q3B3E1|A0A1Q3B3E1_CEPFO1.9e-1877.05Reticulon-like protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_05826 PE=4 ... [more]
tr|A0A061E058|A0A061E058_THECC2.3e-1673.77Reticulon-like protein OS=Theobroma cacao OX=3641 GN=TCM_007136 PE=4 SV=1[more]
tr|D7UC00|D7UC00_VITVI2.3e-1650.82Reticulon-like protein OS=Vitis vinifera OX=29760 GN=VIT_03s0180g00170 PE=4 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR003388Reticulon
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005789 endoplasmic reticulum membrane
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy4G012340.1CsGy4G012340.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003388ReticulonPFAMPF02453Reticuloncoord: 119..164
e-value: 1.3E-14
score: 54.4
IPR003388ReticulonPROSITEPS50845RETICULONcoord: 119..178
score: 17.663
NoneNo IPR availablePANTHERPTHR10994:SF125SUBFAMILY NOT NAMEDcoord: 119..179
NoneNo IPR availablePANTHERPTHR10994RETICULONcoord: 119..179

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsGy4G012340Watermelon (Charleston Gray)cgybwcgB272
CsGy4G012340Watermelon (97103) v1cgybwmB323
CsGy4G012340Wild cucumber (PI 183967)cgybcpiB170
CsGy4G012340Silver-seed gourdcarcgybB0529
CsGy4G012340Cucumber (Chinese Long) v3cgybcucB171
CsGy4G012340Cucurbita maxima (Rimu)cgybcmaB525
CsGy4G012340Cucurbita maxima (Rimu)cgybcmaB522
CsGy4G012340Cucurbita moschata (Rifu)cgybcmoB493
CsGy4G012340Cucurbita moschata (Rifu)cgybcmoB496
CsGy4G012340Cucurbita pepo (Zucchini)cgybcpeB496
CsGy4G012340Cucurbita pepo (Zucchini)cgybcpeB561
CsGy4G012340Cucumber (Chinese Long) v2cgybcuB167
CsGy4G012340Bottle gourd (USVL1VR-Ls)cgyblsiB232
CsGy4G012340Melon (DHL92) v3.5.1cgybmeB249