CsGy4G010950 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy4G010950
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	pentatricopeptide repeat-containing protein At1g09220, mitochondrial
Location	Chr4 : 10084132 .. 10085157 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGGTAAGAAATTGGAAAAAAAAGAAAAGAAAAGAAAAGCTGGAATAGAGTCTCCTTCAACTAAAATTAATTTGGCCAATTCATATCAATTGCAAGGTGATTTTAAAAGAAAAATAAAAACCACATACCATACCAACCAAGAAGTTTATGTTTAATCAAGATTGTGACTTTGGTCCAAGATCACAAAGGCCCACAAGGGCATATGGGCTAATAAACATACTATAACTAAAGTTGATATATGGGCTAATGATATTGAATCTGTTCGTCCCTCAATTTCAAAGCCATGCATAGCTTATGGAAGGGATGCAAGTTCTTCTCCCCTCGATCTTCCTCTACCTCTCAAAATCTTCAATTCCTTTCCTTCTCTTCATTTCTTCAAATCAAATCGCTCTCTCCCTCCGCTGCATCTGACCCTCTCCGCTGCTCTTCCTCCTTCTTAATCTCTCAGGTAATTAAATACGCCACCACCCACAAAGCCACCCAACAAATTCGCTCTTTCATTATCACTTCCGGGTTACTTCTCAATGCCACCGCCAATTTCATTCTTCTATGCAACACACTACTCCATTGTTACCCACTCTACCAGCCCCTTCGCCAATTTCCTCGTATTCCTCCCTCCTATGACACTTTCGCCTATTCCTTCCTTCTCCATTCTTGCGCCGATTTGGAGCTCATCGGACCTGGGTTTCAACTCCACGCTCTCACTTTCAAGCTAGGTTTTCCTTCCCATGTTTATGTTCAAACTGCAGTTCTACGTATGTATGCCGCTTCTGGGTTTTTGCTTGATGCTATGAAGGTGTTCGACGAAATGCCTGACCGAAGCTCTGTTACTTGGAATGTGTTGATTACTGGTTTGGTTAAATTTGGTGAGCTTAAACGGGCTCGGGATGTCTTTGATCAGATGCCGATGCGGACTGTTGTGTCTTGGACTGCTATCATTGATGGGTATACTCGTTTAAATAGGCATGAAGAAGCTGCGGGTTTGTTTTGGAGAATGGTGGCCCATTTTGGTATGGAGCCTAA

mRNA sequence

ATGGGGGTAATTAAATACGCCACCACCCACAAAGCCACCCAACAAATTCGCTCTTTCATTATCACTTCCGGGTTACTTCTCAATGCCACCGCCAATTTCATTCTTCTATGCAACACACTACTCCATTGTTACCCACTCTACCAGCCCCTTCGCCAATTTCCTCGTATTCCTCCCTCCTATGACACTTTCGCCTATTCCTTCCTTCTCCATTCTTGCGCCGATTTGGAGCTCATCGGACCTGGGTTTCAACTCCACGCTCTCACTTTCAAGCTAGGTTTTCCTTCCCATGTTTATGTTCAAACTGCAGTTCTACGTATGTATGCCGCTTCTGGGTTTTTGCTTGATGCTATGAAGGTGTTCGACGAAATGCCTGACCGAAGCTCTGTTACTTGGAATGTGTTGATTACTGGTTTGGTTAAATTTGGTGAGCTTAAACGGGCTCGGGATGTCTTTGATCAGATGCCGATGCGGACTGTTGTGTCTTGGACTGCTATCATTGATGGAAGCTGCGGGTTTGTTTTGGAGAATGGTGGCCCATTTTGGTATGGAGCCTAA

Coding sequence (CDS)

ATGGGGGTAATTAAATACGCCACCACCCACAAAGCCACCCAACAAATTCGCTCTTTCATTATCACTTCCGGGTTACTTCTCAATGCCACCGCCAATTTCATTCTTCTATGCAACACACTACTCCATTGTTACCCACTCTACCAGCCCCTTCGCCAATTTCCTCGTATTCCTCCCTCCTATGACACTTTCGCCTATTCCTTCCTTCTCCATTCTTGCGCCGATTTGGAGCTCATCGGACCTGGGTTTCAACTCCACGCTCTCACTTTCAAGCTAGGTTTTCCTTCCCATGTTTATGTTCAAACTGCAGTTCTACGTATGTATGCCGCTTCTGGGTTTTTGCTTGATGCTATGAAGGTGTTCGACGAAATGCCTGACCGAAGCTCTGTTACTTGGAATGTGTTGATTACTGGTTTGGTTAAATTTGGTGAGCTTAAACGGGCTCGGGATGTCTTTGATCAGATGCCGATGCGGACTGTTGTGTCTTGGACTGCTATCATTGATGGAAGCTGCGGGTTTGTTTTGGAGAATGGTGGCCCATTTTGGTATGGAGCCTAA

Protein sequence

MGVIKYATTHKATQQIRSFIITSGLLLNATANFILLCNTLLHCYPLYQPLRQFPRIPPSYDTFAYSFLLHSCADLELIGPGFQLHALTFKLGFPSHVYVQTAVLRMYAASGFLLDAMKVFDEMPDRSSVTWNVLITGLVKFGELKRARDVFDQMPMRTVVSWTAIIDGSCGFVLENGGPFWYGA

Homology

[Close]

BLAST of CsGy4G010950 vs. NCBI nr
Match: XP_004147552.1 (PREDICTED: pentatricopeptide repeat-containing protein At1g09220, mitochondrial [Cucumis sativus] >KGN53956.1 hypothetical protein Csa_4G193260 [Cucumis sativus])

HSP 1 Score: 284.6 bits (727), Expect = 2.3e-73
Identity = 139/139 (100.00%), Postives = 139/139 (100.00%), Query Frame = 0


Query: 3   VIKYATTHKATQQIRSFIITSGLLLNATANFILLCNTLLHCYPLYQPLRQFPRIPPSYDT 62
           VIKYATTHKATQQIRSFIITSGLLLNATANFILLCNTLLHCYPLYQPLRQFPRIPPSYDT
Sbjct: 56  VIKYATTHKATQQIRSFIITSGLLLNATANFILLCNTLLHCYPLYQPLRQFPRIPPSYDT 115

Query: 63  FAYSFLLHSCADLELIGPGFQLHALTFKLGFPSHVYVQTAVLRMYAASGFLLDAMKVFDE 122
           FAYSFLLHSCADLELIGPGFQLHALTFKLGFPSHVYVQTAVLRMYAASGFLLDAMKVFDE
Sbjct: 116 FAYSFLLHSCADLELIGPGFQLHALTFKLGFPSHVYVQTAVLRMYAASGFLLDAMKVFDE 175

Query: 123 MPDRSSVTWNVLITGLVKF 142
           MPDRSSVTWNVLITGLVKF
Sbjct: 176 MPDRSSVTWNVLITGLVKF 194

[Close]

BLAST of CsGy4G010950 vs. NCBI nr
Match: XP_016899586.1 (PREDICTED: pentatricopeptide repeat-containing protein At1g09220, mitochondrial [Cucumis melo])

HSP 1 Score: 271.2 bits (692), Expect = 2.6e-69
Identity = 130/138 (94.20%), Postives = 133/138 (96.38%), Query Frame = 0


Query: 3   VIKYATTHKATQQIRSFIITSGLLLNATANFILLCNTLLHCYPLYQPLRQFPRIPPSYDT 62
           V KYATTHKA QQIRSFII SGLLLNAT NFILLCNTLLHCYPLYQPLRQFPRIPPSYDT
Sbjct: 56  VFKYATTHKAAQQIRSFIIASGLLLNATTNFILLCNTLLHCYPLYQPLRQFPRIPPSYDT 115

Query: 63  FAYSFLLHSCADLELIGPGFQLHALTFKLGFPSHVYVQTAVLRMYAASGFLLDAMKVFDE 122
           FAYSFL HSCADLELIGPGFQLHALTFKLGFPSHVYVQTA+LRMYA+SGFLLDA+KVFDE
Sbjct: 116 FAYSFLFHSCADLELIGPGFQLHALTFKLGFPSHVYVQTAILRMYASSGFLLDALKVFDE 175

Query: 123 MPDRSSVTWNVLITGLVK 141
           MPDRSSVTWNVLITGLVK
Sbjct: 176 MPDRSSVTWNVLITGLVK 193

[Close]

BLAST of CsGy4G010950 vs. NCBI nr
Match: XP_023544594.1 (pentatricopeptide repeat-containing protein At1g09220, mitochondrial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 257.3 bits (656), Expect = 4.0e-65
Identity = 122/138 (88.41%), Postives = 131/138 (94.93%), Query Frame = 0


Query: 3   VIKYATTHKATQQIRSFIITSGLLLNATANFILLCNTLLHCYPLYQPLRQFPRIPPSYDT 62
           +IKYAT+HKATQQIRSFIITSGLLLNATANFILLCNTLLHCYPLYQPLR+ P  PPSYDT
Sbjct: 48  LIKYATSHKATQQIRSFIITSGLLLNATANFILLCNTLLHCYPLYQPLRRIPHTPPSYDT 107

Query: 63  FAYSFLLHSCADLELIGPGFQLHALTFKLGFPSHVYVQTAVLRMYAASGFLLDAMKVFDE 122
           FAYSFLLHSCADLEL GPG QLHALT K+GFPSHVYVQTA++RMYAA GFL+DA+KVFDE
Sbjct: 108 FAYSFLLHSCADLELTGPGLQLHALTLKVGFPSHVYVQTAIVRMYAACGFLVDALKVFDE 167

Query: 123 MPDRSSVTWNVLITGLVK 141
           MPDR+SVTWNVLITGLVK
Sbjct: 168 MPDRNSVTWNVLITGLVK 185

[Close]

BLAST of CsGy4G010950 vs. NCBI nr
Match: XP_022978153.1 (pentatricopeptide repeat-containing protein At1g09220, mitochondrial-like [Cucurbita maxima])

HSP 1 Score: 256.9 bits (655), Expect = 5.2e-65
Identity = 122/138 (88.41%), Postives = 130/138 (94.20%), Query Frame = 0


Query: 3   VIKYATTHKATQQIRSFIITSGLLLNATANFILLCNTLLHCYPLYQPLRQFPRIPPSYDT 62
           +IKYAT+HKATQQIRSFIITSGLL NATANFILLCNTLLHCYPLYQPLR+ P  PPSYDT
Sbjct: 59  LIKYATSHKATQQIRSFIITSGLLFNATANFILLCNTLLHCYPLYQPLRRIPHTPPSYDT 118

Query: 63  FAYSFLLHSCADLELIGPGFQLHALTFKLGFPSHVYVQTAVLRMYAASGFLLDAMKVFDE 122
           FAYSFLLHSCADLEL GPG QLHALT K+GFPSHVYVQTA++RMYAA GFLLDA+KVFDE
Sbjct: 119 FAYSFLLHSCADLELTGPGLQLHALTLKVGFPSHVYVQTAIVRMYAACGFLLDALKVFDE 178

Query: 123 MPDRSSVTWNVLITGLVK 141
           MPDR+SVTWNVLITGLVK
Sbjct: 179 MPDRNSVTWNVLITGLVK 196

[Close]

BLAST of CsGy4G010950 vs. NCBI nr
Match: XP_022949710.1 (pentatricopeptide repeat-containing protein At1g09220, mitochondrial-like [Cucurbita moschata])

HSP 1 Score: 255.8 bits (652), Expect = 1.2e-64
Identity = 121/138 (87.68%), Postives = 131/138 (94.93%), Query Frame = 0


Query: 3   VIKYATTHKATQQIRSFIITSGLLLNATANFILLCNTLLHCYPLYQPLRQFPRIPPSYDT 62
           +IKYAT+HKATQQIRSFIITSGLLLNATANFILLCNTLLHCYPLY+PLR+ P  PPSYDT
Sbjct: 59  LIKYATSHKATQQIRSFIITSGLLLNATANFILLCNTLLHCYPLYEPLRRIPHTPPSYDT 118

Query: 63  FAYSFLLHSCADLELIGPGFQLHALTFKLGFPSHVYVQTAVLRMYAASGFLLDAMKVFDE 122
           FAYSFLLHSCADLEL GPG QLHALT K+GFPSHVYVQTA++RMYAA GFLLDA+KVFDE
Sbjct: 119 FAYSFLLHSCADLELTGPGLQLHALTLKVGFPSHVYVQTAIVRMYAACGFLLDALKVFDE 178

Query: 123 MPDRSSVTWNVLITGLVK 141
           MP+R+SVTWNVLITGLVK
Sbjct: 179 MPERNSVTWNVLITGLVK 196

[Close]

BLAST of CsGy4G010950 vs. TAIR10
Match: AT1G09220.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 105.9 bits (263), Expect = 2.7e-23
Identity = 67/157 (42.68%), Postives = 87/157 (55.41%), Query Frame = 0


Query: 5   KYATTHKATQQIRSFIITSGLLL---NATANFILLCNTLLHCYP----------LYQPLR 64
           KY +  K   Q+ S   TSG LL      +  + L N LL CY           LY  L+
Sbjct: 45  KYESNLKIIHQLHSHFTTSGFLLLHQKQNSGKLFLFNPLLRCYSLGETPLHAYFLYDQLQ 104

Query: 65  QFPRIP------PSYDTFAYSFLLHSCADLE----LIGPGFQLHALTFKLGFPSHVYVQT 124
           +   +       P +D+F Y FLL + ++      L+G G  LH LT KLGF SHVYVQT
Sbjct: 105 RLHFLSDHNKSLPPFDSFTYLFLLKASSNPRFPSLLLGIG--LHGLTLKLGFESHVYVQT 164

Query: 125 AVLRMYAASGFLLDAMKVFDEMPDRSSVTWNVLITGL 139
           A++ MY   G ++DA KVFDEMP+R+ VTWNV+ITGL
Sbjct: 165 ALVGMYLVGGNMIDAHKVFDEMPERNPVTWNVMITGL 199

[Close]

BLAST of CsGy4G010950 vs. TAIR10
Match: AT5G39680.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 72.0 bits (175), Expect = 4.3e-13
Identity = 38/82 (46.34%), Postives = 50/82 (60.98%), Query Frame = 0


Query: 56  IPPSYDTFAYSFLLHSCADLELIGPGFQLHALTFKLGFPSHVYVQTAVLRMYAASGFLLD 115
           +PP+  TFA   LL+S A+L L+  G  LH L  K G+ +HV V  A++ MYA SG + D
Sbjct: 334 VPPNEYTFA--ILLNSIAELSLLKQGDLLHGLVLKSGYRNHVMVGNALVNMYAKSGSIED 393

Query: 116 AMKVFDEMPDRSSVTWNVLITG 138
           A K F  M  R  VTWN +I+G
Sbjct: 394 ARKAFSGMTFRDIVTWNTMISG 413

[Close]

BLAST of CsGy4G010950 vs. TAIR10
Match: AT1G59720.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 69.7 bits (169), Expect = 2.1e-12
Identity = 35/83 (42.17%), Postives = 48/83 (57.83%), Query Frame = 0


Query: 59  SYDTFAYSFLLHSCADLELIGPGFQLHALTFKLGFPSHVYVQTAVLRMYAASGFLLDAMK 118
           S D   + F+L +CA +     G Q+H    K GF   VYV   ++ +Y + G L  A K
Sbjct: 148 SPDKHTFPFVLKACAYIFGFSEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARK 207

Query: 119 VFDEMPDRSSVTWNVLITGLVKF 142
           VFDEMP+RS V+WN +I  LV+F
Sbjct: 208 VFDEMPERSLVSWNSMIDALVRF 230

[Close]

BLAST of CsGy4G010950 vs. TAIR10
Match: AT2G34400.1 (Pentatricopeptide repeat (PPR-like) superfamily protein)

HSP 1 Score: 69.3 bits (168), Expect = 2.8e-12
Identity = 31/77 (40.26%), Postives = 50/77 (64.94%), Query Frame = 0


Query: 61  DTFAYSFLLHSCADLELIGPGFQLHALTFKLGFPSHVYVQTAVLRMYAASGFLLDAMKVF 120
           D F Y+F+  +CA LE IG G  +H+  FK+G    V++  +++ MYA  G +  A K+F
Sbjct: 131 DKFTYNFVFIACAKLEEIGVGRSVHSSLFKVGLERDVHINHSLIMMYAKCGQVGYARKLF 190

Query: 121 DEMPDRSSVTWNVLITG 138
           DE+ +R +V+WN +I+G
Sbjct: 191 DEITERDTVSWNSMISG 207

[Close]

BLAST of CsGy4G010950 vs. TAIR10
Match: AT4G21065.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 68.9 bits (167), Expect = 3.6e-12
Identity = 33/100 (33.00%), Postives = 56/100 (56.00%), Query Frame = 0


Query: 41  LHCYPLYQPLRQFPRIPPSYDTFAYSFLLHSCADLELIGPGFQLHALTFKLGFPSHVYVQ 100
           +  + LY+ +R    + P  DT  Y FL+ +   +  +  G  +H++  + GF S +YVQ
Sbjct: 102 ISAFSLYREMRVSGLVEP--DTHTYPFLIKAVTTMADVRLGETIHSVVIRSGFGSLIYVQ 161

Query: 101 TAVLRMYAASGFLLDAMKVFDEMPDRSSVTWNVLITGLVK 141
            ++L +YA  G +  A KVFD+MP++  V WN +I G  +
Sbjct: 162 NSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAE 199

[Close]

BLAST of CsGy4G010950 vs. Swiss-Prot
Match: sp|Q680Z7|PPR24_ARATH (Pentatricopeptide repeat-containing protein At1g09220, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-E25 PE=2 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 4.8e-22
Identity = 67/157 (42.68%), Postives = 87/157 (55.41%), Query Frame = 0


Query: 5   KYATTHKATQQIRSFIITSGLLL---NATANFILLCNTLLHCYP----------LYQPLR 64
           KY +  K   Q+ S   TSG LL      +  + L N LL CY           LY  L+
Sbjct: 45  KYESNLKIIHQLHSHFTTSGFLLLHQKQNSGKLFLFNPLLRCYSLGETPLHAYFLYDQLQ 104

Query: 65  QFPRIP------PSYDTFAYSFLLHSCADLE----LIGPGFQLHALTFKLGFPSHVYVQT 124
           +   +       P +D+F Y FLL + ++      L+G G  LH LT KLGF SHVYVQT
Sbjct: 105 RLHFLSDHNKSLPPFDSFTYLFLLKASSNPRFPSLLLGIG--LHGLTLKLGFESHVYVQT 164

Query: 125 AVLRMYAASGFLLDAMKVFDEMPDRSSVTWNVLITGL 139
           A++ MY   G ++DA KVFDEMP+R+ VTWNV+ITGL
Sbjct: 165 ALVGMYLVGGNMIDAHKVFDEMPERNPVTWNVMITGL 199

[Close]

BLAST of CsGy4G010950 vs. Swiss-Prot
Match: sp|Q9FK93|PP406_ARATH (Pentatricopeptide repeat-containing protein At5g39680 OS=Arabidopsis thaliana OX=3702 GN=EMB2744 PE=1 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 7.7e-12
Identity = 38/82 (46.34%), Postives = 50/82 (60.98%), Query Frame = 0


Query: 56  IPPSYDTFAYSFLLHSCADLELIGPGFQLHALTFKLGFPSHVYVQTAVLRMYAASGFLLD 115
           +PP+  TFA   LL+S A+L L+  G  LH L  K G+ +HV V  A++ MYA SG + D
Sbjct: 334 VPPNEYTFA--ILLNSIAELSLLKQGDLLHGLVLKSGYRNHVMVGNALVNMYAKSGSIED 393

Query: 116 AMKVFDEMPDRSSVTWNVLITG 138
           A K F  M  R  VTWN +I+G
Sbjct: 394 ARKAFSGMTFRDIVTWNTMISG 413

[Close]

BLAST of CsGy4G010950 vs. Swiss-Prot
Match: sp|Q0WQW5|PPR85_ARATH (Pentatricopeptide repeat-containing protein At1g59720, chloroplastic/mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-H51 PE=1 SV=2)

HSP 1 Score: 69.7 bits (169), Expect = 3.8e-11
Identity = 35/83 (42.17%), Postives = 48/83 (57.83%), Query Frame = 0


Query: 59  SYDTFAYSFLLHSCADLELIGPGFQLHALTFKLGFPSHVYVQTAVLRMYAASGFLLDAMK 118
           S D   + F+L +CA +     G Q+H    K GF   VYV   ++ +Y + G L  A K
Sbjct: 148 SPDKHTFPFVLKACAYIFGFSEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARK 207

Query: 119 VFDEMPDRSSVTWNVLITGLVKF 142
           VFDEMP+RS V+WN +I  LV+F
Sbjct: 208 VFDEMPERSLVSWNSMIDALVRF 230

[Close]

BLAST of CsGy4G010950 vs. Swiss-Prot
Match: sp|O64705|PP184_ARATH (Pentatricopeptide repeat-containing protein At2g34400 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E23 PE=3 SV=2)

HSP 1 Score: 69.3 bits (168), Expect = 5.0e-11
Identity = 31/77 (40.26%), Postives = 50/77 (64.94%), Query Frame = 0


Query: 61  DTFAYSFLLHSCADLELIGPGFQLHALTFKLGFPSHVYVQTAVLRMYAASGFLLDAMKVF 120
           D F Y+F+  +CA LE IG G  +H+  FK+G    V++  +++ MYA  G +  A K+F
Sbjct: 131 DKFTYNFVFIACAKLEEIGVGRSVHSSLFKVGLERDVHINHSLIMMYAKCGQVGYARKLF 190

Query: 121 DEMPDRSSVTWNVLITG 138
           DE+ +R +V+WN +I+G
Sbjct: 191 DEITERDTVSWNSMISG 207

[Close]

BLAST of CsGy4G010950 vs. Swiss-Prot
Match: sp|A8MQA3|PP330_ARATH (Pentatricopeptide repeat-containing protein At4g21065 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H28 PE=2 SV=2)

HSP 1 Score: 68.9 bits (167), Expect = 6.5e-11
Identity = 33/100 (33.00%), Postives = 56/100 (56.00%), Query Frame = 0


Query: 41  LHCYPLYQPLRQFPRIPPSYDTFAYSFLLHSCADLELIGPGFQLHALTFKLGFPSHVYVQ 100
           +  + LY+ +R    + P  DT  Y FL+ +   +  +  G  +H++  + GF S +YVQ
Sbjct: 102 ISAFSLYREMRVSGLVEP--DTHTYPFLIKAVTTMADVRLGETIHSVVIRSGFGSLIYVQ 161

Query: 101 TAVLRMYAASGFLLDAMKVFDEMPDRSSVTWNVLITGLVK 141
            ++L +YA  G +  A KVFD+MP++  V WN +I G  +
Sbjct: 162 NSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAE 199

[Close]

BLAST of CsGy4G010950 vs. TrEMBL
Match: tr|A0A0A0L1E8|A0A0A0L1E8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G193260 PE=4 SV=1)

HSP 1 Score: 284.6 bits (727), Expect = 1.5e-73
Identity = 139/139 (100.00%), Postives = 139/139 (100.00%), Query Frame = 0


Query: 3   VIKYATTHKATQQIRSFIITSGLLLNATANFILLCNTLLHCYPLYQPLRQFPRIPPSYDT 62
           VIKYATTHKATQQIRSFIITSGLLLNATANFILLCNTLLHCYPLYQPLRQFPRIPPSYDT
Sbjct: 56  VIKYATTHKATQQIRSFIITSGLLLNATANFILLCNTLLHCYPLYQPLRQFPRIPPSYDT 115

Query: 63  FAYSFLLHSCADLELIGPGFQLHALTFKLGFPSHVYVQTAVLRMYAASGFLLDAMKVFDE 122
           FAYSFLLHSCADLELIGPGFQLHALTFKLGFPSHVYVQTAVLRMYAASGFLLDAMKVFDE
Sbjct: 116 FAYSFLLHSCADLELIGPGFQLHALTFKLGFPSHVYVQTAVLRMYAASGFLLDAMKVFDE 175

Query: 123 MPDRSSVTWNVLITGLVKF 142
           MPDRSSVTWNVLITGLVKF
Sbjct: 176 MPDRSSVTWNVLITGLVKF 194

[Close]

BLAST of CsGy4G010950 vs. TrEMBL
Match: tr|A0A1S4DUC6|A0A1S4DUC6_CUCME (pentatricopeptide repeat-containing protein At1g09220, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103485965 PE=4 SV=1)

HSP 1 Score: 271.2 bits (692), Expect = 1.8e-69
Identity = 130/138 (94.20%), Postives = 133/138 (96.38%), Query Frame = 0


Query: 3   VIKYATTHKATQQIRSFIITSGLLLNATANFILLCNTLLHCYPLYQPLRQFPRIPPSYDT 62
           V KYATTHKA QQIRSFII SGLLLNAT NFILLCNTLLHCYPLYQPLRQFPRIPPSYDT
Sbjct: 56  VFKYATTHKAAQQIRSFIIASGLLLNATTNFILLCNTLLHCYPLYQPLRQFPRIPPSYDT 115

Query: 63  FAYSFLLHSCADLELIGPGFQLHALTFKLGFPSHVYVQTAVLRMYAASGFLLDAMKVFDE 122
           FAYSFL HSCADLELIGPGFQLHALTFKLGFPSHVYVQTA+LRMYA+SGFLLDA+KVFDE
Sbjct: 116 FAYSFLFHSCADLELIGPGFQLHALTFKLGFPSHVYVQTAILRMYASSGFLLDALKVFDE 175

Query: 123 MPDRSSVTWNVLITGLVK 141
           MPDRSSVTWNVLITGLVK
Sbjct: 176 MPDRSSVTWNVLITGLVK 193

[Close]

BLAST of CsGy4G010950 vs. TrEMBL
Match: tr|A0A2P5CHC8|A0A2P5CHC8_PARAD (Tetratricopeptide-like helical domain containing protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_152530 PE=4 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 3.2e-31
Identity = 76/149 (51.01%), Postives = 103/149 (69.13%), Query Frame = 0


Query: 3   VIKYATTHKATQQIRSFIITSGLLLNATANFILLCNTLLHCY----------PLYQPLRQ 62
           ++K+ ++   T+Q+ S+IITSG LL    NF+LL N LL  Y           LY+    
Sbjct: 56  LLKHPSSTHLTKQVHSYIITSGQLLGHN-NFLLLFNNLLRRYAHGDFPHQAFSLYKYFFH 115

Query: 63  FPRIPPSYDTFAYSFLLHSCADLELIGPGFQLHALTFKLGFPSHVYVQTAVLRMYAASGF 122
           F   PP +D+F YSFLLH+C++L  + PGFQLHAL F++GF SHVYVQTA++ MY +SGF
Sbjct: 116 FS--PPYFDSFTYSFLLHACSNLNSVTPGFQLHALAFRVGFHSHVYVQTAMVNMYVSSGF 175

Query: 123 LLDAMKVFDEMPDRSSVTWNVLITGLVKF 142
           L +A +VFDEM D++ VTWNV+ITGL K+
Sbjct: 176 LDEAHQVFDEMSDKNCVTWNVMITGLAKW 201

[Close]

BLAST of CsGy4G010950 vs. TrEMBL
Match: tr|W9SN83|W9SN83_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_000258 PE=4 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 2.1e-30
Identity = 70/144 (48.61%), Postives = 97/144 (67.36%), Query Frame = 0


Query: 5   KYATTHKATQQIRSFIITSGLLLNATANFILLCNTLLHCY-------PLYQPLRQFPRIP 64
           K+ +  +  QQ+ S I+TSGL+L   A   +L N LL CY         +   + F   P
Sbjct: 12  KHPSNRRVAQQVHSHILTSGLILQRHA---ILFNALLRCYSHGDFPHQAFSLYKHFLYSP 71

Query: 65  PSYDTFAYSFLLHSCADLELIGPGFQLHALTFKLGFPSHVYVQTAVLRMYAASGFLLDAM 124
           P +D+F YSFLLH+C++LE + PG+QLHA++FK+GF  HVYVQTA+  MY + G L +A 
Sbjct: 72  PPFDSFTYSFLLHACSNLESVIPGYQLHAISFKVGFHFHVYVQTALANMYVSCGLLREAH 131

Query: 125 KVFDEMPDRSSVTWNVLITGLVKF 142
           +VFDEMP+R+ VTWNV+ITGL K+
Sbjct: 132 QVFDEMPERNFVTWNVMITGLAKW 152

[Close]

BLAST of CsGy4G010950 vs. TrEMBL
Match: tr|A0A2P5CI51|A0A2P5CI51_9ROSA (Tetratricopeptide-like helical domain containing protein OS=Trema orientalis OX=63057 GN=TorRG33x02_284130 PE=4 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 1.8e-29
Identity = 74/149 (49.66%), Postives = 101/149 (67.79%), Query Frame = 0


Query: 3   VIKYATTHKATQQIRSFIITSGLLLNATANFILLCNTLLHCY----------PLYQPLRQ 62
           ++K+ ++   T+Q+ S IITS  LL    N +LL N LL  Y           LY+    
Sbjct: 56  LLKHPSSTHLTKQVHSHIITSAQLLGYN-NSLLLFNNLLRRYAHGDFPHQAFSLYKYFIH 115

Query: 63  FPRIPPSYDTFAYSFLLHSCADLELIGPGFQLHALTFKLGFPSHVYVQTAVLRMYAASGF 122
           F   PPS+D+F YSFLLH+C++L  + PGFQLHAL F++GF SHVYVQTA++ MY +SGF
Sbjct: 116 FS--PPSFDSFTYSFLLHACSNLNSVTPGFQLHALAFRVGFHSHVYVQTAMVNMYVSSGF 175

Query: 123 LLDAMKVFDEMPDRSSVTWNVLITGLVKF 142
           L +A +VFDEM +++ VTWNV+ITGL K+
Sbjct: 176 LHEAHQVFDEMSEKNCVTWNVMITGLAKW 201

The following BLAST results are available for this feature:

BLAST of CsGy4G010950 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004147552.1	2.3e-73	100.00	PREDICTED: pentatricopeptide repeat-containing protein At1g09220, mitochondrial ...	[more]
XP_016899586.1	2.6e-69	94.20	PREDICTED: pentatricopeptide repeat-containing protein At1g09220, mitochondrial ...	[more]
XP_023544594.1	4.0e-65	88.41	pentatricopeptide repeat-containing protein At1g09220, mitochondrial [Cucurbita ...	[more]
XP_022978153.1	5.2e-65	88.41	pentatricopeptide repeat-containing protein At1g09220, mitochondrial-like [Cucur...	[more]
XP_022949710.1	1.2e-64	87.68	pentatricopeptide repeat-containing protein At1g09220, mitochondrial-like [Cucur...	[more]

BLAST of CsGy4G010950 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G09220.1	2.7e-23	42.68	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT5G39680.1	4.3e-13	46.34	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT1G59720.1	2.1e-12	42.17	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT2G34400.1	2.8e-12	40.26	Pentatricopeptide repeat (PPR-like) superfamily protein	[more]
AT4G21065.1	3.6e-12	33.00	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

BLAST of CsGy4G010950 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q680Z7\|PPR24_ARATH	4.8e-22	42.68	Pentatricopeptide repeat-containing protein At1g09220, mitochondrial OS=Arabidop...	[more]
sp\|Q9FK93\|PP406_ARATH	7.7e-12	46.34	Pentatricopeptide repeat-containing protein At5g39680 OS=Arabidopsis thaliana OX...	[more]
sp\|Q0WQW5\|PPR85_ARATH	3.8e-11	42.17	Pentatricopeptide repeat-containing protein At1g59720, chloroplastic/mitochondri...	[more]
sp\|O64705\|PP184_ARATH	5.0e-11	40.26	Pentatricopeptide repeat-containing protein At2g34400 OS=Arabidopsis thaliana OX...	[more]
sp\|A8MQA3\|PP330_ARATH	6.5e-11	33.00	Pentatricopeptide repeat-containing protein At4g21065 OS=Arabidopsis thaliana OX...	[more]

BLAST of CsGy4G010950 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L1E8\|A0A0A0L1E8_CUCSA	1.5e-73	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G193260 PE=4 SV=1	[more]
tr\|A0A1S4DUC6\|A0A1S4DUC6_CUCME	1.8e-69	94.20	pentatricopeptide repeat-containing protein At1g09220, mitochondrial OS=Cucumis ...	[more]
tr\|A0A2P5CHC8\|A0A2P5CHC8_PARAD	3.2e-31	51.01	Tetratricopeptide-like helical domain containing protein OS=Parasponia andersoni...	[more]
tr\|W9SN83\|W9SN83_9ROSA	2.1e-30	48.61	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_000258 PE=4 SV=1	[more]
tr\|A0A2P5CI51\|A0A2P5CI51_9ROSA	1.8e-29	49.66	Tetratricopeptide-like helical domain containing protein OS=Trema orientalis OX=...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR002885	Pentatricopeptide_repeat
IPR011990	TPR-like_helical_dom_sf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy4G010950.1	CsGy4G010950.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	G3DSA:1.25.40.10		coord: 46..176 e-value: 3.4E-20 score: 74.6
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 129..156 e-value: 1.1E-6 score: 28.3 coord: 101..126 e-value: 0.003 score: 17.6
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 129..155 e-value: 2.4E-6 score: 25.3
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 127..161 score: 10.457
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 96..126 score: 7.366
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 61..95 score: 6.051
None	No IPR available	PANTHER	PTHR24015:SF645	SUBFAMILY NOT NAMED	coord: 36..168
None	No IPR available	PANTHER	PTHR24015	FAMILY NOT NAMED	coord: 36..168

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy4G010950	Cla012145	Watermelon (97103) v1	cgybwmB315
CsGy4G010950	Csa4G193260	Cucumber (Chinese Long) v2	cgybcuB168
CsGy4G010950	ClCG04G005180	Watermelon (Charleston Gray)	cgybwcgB284
CsGy4G010950	CSPI04G11410	Wild cucumber (PI 183967)	cgybcpiB168
CsGy4G010950	CmaCh03G002530	Cucurbita maxima (Rimu)	cgybcmaB529
CsGy4G010950	CmoCh03G002690	Cucurbita moschata (Rifu)	cgybcmoB501
CsGy4G010950	Cp4.1LG10g07210	Cucurbita pepo (Zucchini)	cgybcpeB473
CsGy4G010950	MELO3C033116.2	Melon (DHL92) v3.6.1	cgybmedB280
CsGy4G010950	CsaV3_4G013430	Cucumber (Chinese Long) v3	cgybcucB171
CsGy4G010950	Cla97C04G071750	Watermelon (97103) v2	cgybwmbB284
CsGy4G010950	Bhi03G001820	Wax gourd	cgybwgoB387
CsGy4G010950	Carg19554	Silver-seed gourd	carcgybB0627

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy4G010950	Cucurbita maxima (Rimu)	cgybcmaB563
CsGy4G010950	Cucurbita moschata (Rifu)	cgybcmoB538
CsGy4G010950	Cucurbita pepo (Zucchini)	cgybcpeB533
CsGy4G010950	Bottle gourd (USVL1VR-Ls)	cgyblsiB244
CsGy4G010950	Melon (DHL92) v3.5.1	cgybmeB280
CsGy4G010950	Silver-seed gourd	carcgybB0296