CsGy4G010450 (gene) Cucumber (Gy14) v2

NameCsGy4G010450
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
DescriptionRop guanine nucleotide exchange factor 7
LocationChr4 : 9523465 .. 9525179 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAGGCTTCTGGTTCTTTTCTTCCTTAAATGCCTCTCCTCGTCTAGAACTCTCCTACAGAACTTCAATACTTATACCCTCTTAACAAAACTTCCAAAATAACAACATTTCTCTTAGGTCTTCACCCTTATTTATACTAATTCTTTGGACCAATTACTCTCTTTATCTGCCAGTTCAGAATTACAACTTTACAACATATCACCTCACCTCATTTATTTGACACAGTGTAGTTATTTGACACACTGTGTTTATTTATTTAACAACTTGTTATTTATTTCACAAACTTTATTGTTATTGTTGTTGTTGTTGTTGCTGCTGCAAAGAGTACAACAAAGTTTGGTCGGGGACTCAACTAGTATGTCTCTTTTATCTACATTTTAAACTTGTTTAACTTTGATAGACTAGCATATGAAAAGTGCGAAACGTGGTGACATAAAAAGGAAAGCAATAGACTAAATTAAGTACACAAGACATAAATATAATGTGGTTTGAGGATGTTTGGACATGCATAGGCAAACAACACTCTGGACAAGCACGCTCATGACACGTTGCAGGCTGAAGAATCTATATTTATTTGTCTATTGTTTAATTATGGATATTTCTTTTAGAAGTACCACCCATTTTACTCTTGATTGATATGTATCCTATGTTTTCTTTTTTTCATCTAGTTTACACAGTCAGAGAGTACTTTGGGTGGAGTAAGTTTATGCATTATTATGTATTTAAATATTTTTGGTATATTTGATAAGTGATAAATTTGTTCTTGTGTGTAGTTAATTTTGATCTTCACTTTAAGTATCAGACTTCAAGCTTTCACTAATGGGGATGATCATTTCTATATCTTGAATGAGTTAGTTTTATATTTTAATCTTAACCAACTGGAAGATCTTCTGTTGTGATGGTTTGGTTTTGGCTCCTTTCTCTGGGCTATTTAAGTTTGGTTTGGACCTTTTGGGTGTTTGAGTGTGGTTGCTAGGCTGTTGAAGTTCAAGCAATCATTTAACTGATTTCAGTGAGTTCATCACACATGGAATCTATCTTTTGCAACAGTTTTCCATTGCAAAAAGGAGGAGTAAGGAGGTCGTTGATGGTCAATGGAGCTCTTGATCAGTAAAGCGGCTTTATGATATTAGATTCAGGGGGAGCACGCCCTAAAGTACATGAGACGAGTTCAGTAAAGAATACTTTCAGAATATAGTTTCAATATTCTAGGAATGACTATGTACAACATGATATTCTTCTACGTTGATGTGTGTACAAATGACAATTATCATGTACTCATAAATCGTTTTATAAGGCAATACATGGATCTCGTTCTATAGGTCGAATACCACCCAAAACTAGATCACCAATTCTTCTGTGTTCGGATTCTGATTATTACTTTTACAGTCTATTATTTATGCTGTTACTTTAGTTATTAATCGCATCTATCTTAAACCATCAAGTTAATCTTGTCTTTCGTTTATCATGAAGTATGAGTAAATGTTTTCGCATTATTTATACTTAACTTGTTTTTCAATCTTATGAATGATAATATAATATATATAACCTTTCTGTGTTTAGTTTGTTTATGGTGTATGAGGTTATAGAGAATGTCATGATGAAGGAAAAACTTTCAAAATGGTTACTTACTGAAGATATGTCAGGCTATGGAAATGGGGTTTGTATAGCATTAGTTATATCTAATGTCATTACAAATCTCTGTGGTATATGA

mRNA sequence

ATGCAGGCTTCTGTTTACACAGTCAGAGAGTACTTTGGGTGGAGTAATTTGTTTATGGTGTATGAGGTTATAGAGAATGTCATGATGAAGGAAAAACTTTCAAAATGGTTACTTACTGAAGATATGTCAGGCTATGGAAATGGGGTTTGTATAGCATTAGTTATATCTAATGTCATTACAAATCTCTGTGGTATATGA

Coding sequence (CDS)

ATGCAGGCTTCTGTTTACACAGTCAGAGAGTACTTTGGGTGGAGTAATTTGTTTATGGTGTATGAGGTTATAGAGAATGTCATGATGAAGGAAAAACTTTCAAAATGGTTACTTACTGAAGATATGTCAGGCTATGGAAATGGGGTTTGTATAGCATTAGTTATATCTAATGTCATTACAAATCTCTGTGGTATATGA

Protein sequence

MQASVYTVREYFGWSNLFMVYEVIENVMMKEKLSKWLLTEDMSGYGNGVCIALVISNVITNLCGI
BLAST of CsGy4G010450 vs. NCBI nr
Match: XP_004137923.2 (PREDICTED: rop guanine nucleotide exchange factor 7-like isoform X1 [Cucumis sativus] >KGN58823.1 hypothetical protein Csa_3G733280 [Cucumis sativus])

HSP 1 Score: 61.6 bits (148), Expect = 1.1e-06
Identity = 30/40 (75.00%), Postives = 31/40 (77.50%), Query Frame = 0

Query: 25  ENVMMKEKLSKWLLTEDMSGYGNGVCIALVISNVITNLCG 65
           E  MMKE+ SK LL EDMSG GNGVC AL ISN ITNLCG
Sbjct: 192 ETEMMKERFSKLLLGEDMSGSGNGVCTALAISNAITNLCG 231

BLAST of CsGy4G010450 vs. NCBI nr
Match: XP_011651878.1 (PREDICTED: rop guanine nucleotide exchange factor 7-like isoform X3 [Cucumis sativus])

HSP 1 Score: 61.6 bits (148), Expect = 1.1e-06
Identity = 30/40 (75.00%), Postives = 31/40 (77.50%), Query Frame = 0

Query: 25  ENVMMKEKLSKWLLTEDMSGYGNGVCIALVISNVITNLCG 65
           E  MMKE+ SK LL EDMSG GNGVC AL ISN ITNLCG
Sbjct: 176 ETEMMKERFSKLLLGEDMSGSGNGVCTALAISNAITNLCG 215

BLAST of CsGy4G010450 vs. NCBI nr
Match: XP_008442490.1 (PREDICTED: rop guanine nucleotide exchange factor 7-like [Cucumis melo])

HSP 1 Score: 60.8 bits (146), Expect = 1.9e-06
Identity = 30/40 (75.00%), Postives = 31/40 (77.50%), Query Frame = 0

Query: 25  ENVMMKEKLSKWLLTEDMSGYGNGVCIALVISNVITNLCG 65
           E  MMKE+ SK LL EDMSG GNGVC AL ISN ITNLCG
Sbjct: 171 EMEMMKERFSKLLLGEDMSGSGNGVCTALAISNAITNLCG 210

BLAST of CsGy4G010450 vs. NCBI nr
Match: XP_010553054.1 (PREDICTED: rop guanine nucleotide exchange factor 7-like [Tarenaya hassleriana])

HSP 1 Score: 60.8 bits (146), Expect = 1.9e-06
Identity = 32/50 (64.00%), Postives = 33/50 (66.00%), Query Frame = 0

Query: 14  WSNLFMVYEVIENVMMKEKLSKWLLTEDMSGYGNGVCIALVISNVITNLC 64
           W  L     V E  MMKE+ SK LL EDMSG GNGVC AL ISN ITNLC
Sbjct: 160 WGKLGKQQSVSEIEMMKERFSKLLLGEDMSGCGNGVCTALAISNAITNLC 209

BLAST of CsGy4G010450 vs. NCBI nr
Match: XP_011651877.1 (PREDICTED: rop guanine nucleotide exchange factor 7-like isoform X2 [Cucumis sativus])

HSP 1 Score: 60.8 bits (146), Expect = 1.9e-06
Identity = 29/40 (72.50%), Postives = 32/40 (80.00%), Query Frame = 0

Query: 25  ENVMMKEKLSKWLLTEDMSGYGNGVCIALVISNVITNLCG 65
           ++ MMKE+ SK LL EDMSG GNGVC AL ISN ITNLCG
Sbjct: 190 DSEMMKERFSKLLLGEDMSGSGNGVCTALAISNAITNLCG 229

BLAST of CsGy4G010450 vs. TAIR10
Match: AT5G02010.1 (RHO guanyl-nucleotide exchange factor 7)

HSP 1 Score: 58.5 bits (140), Expect = 1.7e-09
Identity = 30/41 (73.17%), Postives = 31/41 (75.61%), Query Frame = 0

Query: 23  VIENVMMKEKLSKWLLTEDMSGYGNGVCIALVISNVITNLC 64
           V E  MMKE+ SK LL EDMSG GNGVC AL ISN ITNLC
Sbjct: 68  VSEVEMMKERFSKLLLGEDMSGSGNGVCTALAISNAITNLC 108

BLAST of CsGy4G010450 vs. TAIR10
Match: AT5G05940.1 (ROP guanine nucleotide exchange factor 5)

HSP 1 Score: 54.3 bits (129), Expect = 3.3e-08
Identity = 26/36 (72.22%), Postives = 28/36 (77.78%), Query Frame = 0

Query: 28  MMKEKLSKWLLTEDMSGYGNGVCIALVISNVITNLC 64
           MMKE+ +K LL EDMSG G GVC AL ISN ITNLC
Sbjct: 105 MMKERFAKLLLGEDMSGSGKGVCTALAISNAITNLC 140

BLAST of CsGy4G010450 vs. TAIR10
Match: AT4G38430.1 (rho guanyl-nucleotide exchange factor 1)

HSP 1 Score: 51.2 bits (121), Expect = 2.8e-07
Identity = 26/41 (63.41%), Postives = 30/41 (73.17%), Query Frame = 0

Query: 22  EVIENVMMKEKLSKWLLTEDMSGYGNGVCIALVISNVITNL 63
           ++ E  MMKE+ +K LL EDMSG G GVC AL ISN ITNL
Sbjct: 87  DLSEIEMMKERFAKLLLGEDMSGGGKGVCTALAISNAITNL 127

BLAST of CsGy4G010450 vs. TAIR10
Match: AT3G55660.1 (ROP (rho of plants) guanine nucleotide exchange factor 6)

HSP 1 Score: 50.1 bits (118), Expect = 6.1e-07
Identity = 25/41 (60.98%), Postives = 30/41 (73.17%), Query Frame = 0

Query: 22  EVIENVMMKEKLSKWLLTEDMSGYGNGVCIALVISNVITNL 63
           E  E  ++KE+++K LL EDMSG G GVC AL ISN ITNL
Sbjct: 104 ETSEIELLKERMAKLLLGEDMSGSGEGVCPALAISNAITNL 144

BLAST of CsGy4G010450 vs. TAIR10
Match: AT1G01700.1 (RHO guanyl-nucleotide exchange factor 2)

HSP 1 Score: 49.3 bits (116), Expect = 1.0e-06
Identity = 24/34 (70.59%), Postives = 26/34 (76.47%), Query Frame = 0

Query: 29  MKEKLSKWLLTEDMSGYGNGVCIALVISNVITNL 63
           MKE+ SK LL EDMSG G GVC A+ ISN ITNL
Sbjct: 120 MKERFSKLLLGEDMSGSGKGVCTAVTISNAITNL 153

BLAST of CsGy4G010450 vs. Swiss-Prot
Match: sp|Q9LZN0|ROGF7_ARATH (Rop guanine nucleotide exchange factor 7 OS=Arabidopsis thaliana OX=3702 GN=ROPGEF7 PE=1 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 3.1e-08
Identity = 30/41 (73.17%), Postives = 31/41 (75.61%), Query Frame = 0

Query: 23  VIENVMMKEKLSKWLLTEDMSGYGNGVCIALVISNVITNLC 64
           V E  MMKE+ SK LL EDMSG GNGVC AL ISN ITNLC
Sbjct: 68  VSEVEMMKERFSKLLLGEDMSGSGNGVCTALAISNAITNLC 108

BLAST of CsGy4G010450 vs. Swiss-Prot
Match: sp|F4K295|ROGF5_ARATH (Rop guanine nucleotide exchange factor 5 OS=Arabidopsis thaliana OX=3702 GN=ROPGEF5 PE=2 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 5.9e-07
Identity = 26/36 (72.22%), Postives = 28/36 (77.78%), Query Frame = 0

Query: 28  MMKEKLSKWLLTEDMSGYGNGVCIALVISNVITNLC 64
           MMKE+ +K LL EDMSG G GVC AL ISN ITNLC
Sbjct: 105 MMKERFAKLLLGEDMSGSGKGVCTALAISNAITNLC 140

BLAST of CsGy4G010450 vs. Swiss-Prot
Match: sp|Q93ZY2|ROGF1_ARATH (Rop guanine nucleotide exchange factor 1 OS=Arabidopsis thaliana OX=3702 GN=ROPGEF1 PE=1 SV=2)

HSP 1 Score: 51.2 bits (121), Expect = 5.0e-06
Identity = 26/41 (63.41%), Postives = 30/41 (73.17%), Query Frame = 0

Query: 22  EVIENVMMKEKLSKWLLTEDMSGYGNGVCIALVISNVITNL 63
           ++ E  MMKE+ +K LL EDMSG G GVC AL ISN ITNL
Sbjct: 87  DLSEIEMMKERFAKLLLGEDMSGGGKGVCTALAISNAITNL 127

BLAST of CsGy4G010450 vs. Swiss-Prot
Match: sp|Q9M056|ROFG6_ARATH (Rop guanine nucleotide exchange factor 6 OS=Arabidopsis thaliana OX=3702 GN=ROPGEF6 PE=2 SV=1)

HSP 1 Score: 50.1 bits (118), Expect = 1.1e-05
Identity = 25/41 (60.98%), Postives = 30/41 (73.17%), Query Frame = 0

Query: 22  EVIENVMMKEKLSKWLLTEDMSGYGNGVCIALVISNVITNL 63
           E  E  ++KE+++K LL EDMSG G GVC AL ISN ITNL
Sbjct: 104 ETSEIELLKERMAKLLLGEDMSGSGEGVCPALAISNAITNL 144

BLAST of CsGy4G010450 vs. Swiss-Prot
Match: sp|Q9LQ89|ROGF2_ARATH (Rop guanine nucleotide exchange factor 2 OS=Arabidopsis thaliana OX=3702 GN=ROPGEF2 PE=1 SV=2)

HSP 1 Score: 49.3 bits (116), Expect = 1.9e-05
Identity = 24/34 (70.59%), Postives = 26/34 (76.47%), Query Frame = 0

Query: 29  MKEKLSKWLLTEDMSGYGNGVCIALVISNVITNL 63
           MKE+ SK LL EDMSG G GVC A+ ISN ITNL
Sbjct: 120 MKERFSKLLLGEDMSGSGKGVCTAVTISNAITNL 153

BLAST of CsGy4G010450 vs. TrEMBL
Match: tr|A0A0A0LAD8|A0A0A0LAD8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G733280 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 7.4e-07
Identity = 30/40 (75.00%), Postives = 31/40 (77.50%), Query Frame = 0

Query: 25  ENVMMKEKLSKWLLTEDMSGYGNGVCIALVISNVITNLCG 65
           E  MMKE+ SK LL EDMSG GNGVC AL ISN ITNLCG
Sbjct: 192 ETEMMKERFSKLLLGEDMSGSGNGVCTALAISNAITNLCG 231

BLAST of CsGy4G010450 vs. TrEMBL
Match: tr|A0A1S3B5B2|A0A1S3B5B2_CUCME (rop guanine nucleotide exchange factor 7-like OS=Cucumis melo OX=3656 GN=LOC103486343 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.3e-06
Identity = 30/40 (75.00%), Postives = 31/40 (77.50%), Query Frame = 0

Query: 25  ENVMMKEKLSKWLLTEDMSGYGNGVCIALVISNVITNLCG 65
           E  MMKE+ SK LL EDMSG GNGVC AL ISN ITNLCG
Sbjct: 171 EMEMMKERFSKLLLGEDMSGSGNGVCTALAISNAITNLCG 210

BLAST of CsGy4G010450 vs. TrEMBL
Match: tr|A0A022RS89|A0A022RS89_ERYGU (Uncharacterized protein OS=Erythranthe guttata OX=4155 GN=MIMGU_mgv1a004616mg PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.7e-06
Identity = 29/39 (74.36%), Postives = 31/39 (79.49%), Query Frame = 0

Query: 25 ENVMMKEKLSKWLLTEDMSGYGNGVCIALVISNVITNLC 64
          EN MMKE+ +K LL EDMSG GNGVC AL ISN ITNLC
Sbjct: 56 ENEMMKERFAKLLLGEDMSGCGNGVCTALAISNAITNLC 94

BLAST of CsGy4G010450 vs. TrEMBL
Match: tr|A0A022QJE0|A0A022QJE0_ERYGU (Uncharacterized protein OS=Erythranthe guttata OX=4155 GN=MIMGU_mgv1a005948mg PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.7e-06
Identity = 29/36 (80.56%), Postives = 30/36 (83.33%), Query Frame = 0

Query: 28 MMKEKLSKWLLTEDMSGYGNGVCIALVISNVITNLC 64
          MMKE+ SK LL EDMSGYGNGVC AL ISN ITNLC
Sbjct: 1  MMKERFSKLLLGEDMSGYGNGVCNALAISNAITNLC 36

BLAST of CsGy4G010450 vs. TrEMBL
Match: tr|A0A2G2YLJ6|A0A2G2YLJ6_CAPAN (Uncharacterized protein OS=Capsicum annuum OX=4072 GN=T459_25565 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 2.2e-06
Identity = 29/37 (78.38%), Postives = 30/37 (81.08%), Query Frame = 0

Query: 28  MMKEKLSKWLLTEDMSGYGNGVCIALVISNVITNLCG 65
           MMKE+ SK LL EDMSG GNGVC AL ISN ITNLCG
Sbjct: 167 MMKERFSKLLLGEDMSGCGNGVCTALAISNAITNLCG 203

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_004137923.21.1e-0675.00PREDICTED: rop guanine nucleotide exchange factor 7-like isoform X1 [Cucumis sat... [more]
XP_011651878.11.1e-0675.00PREDICTED: rop guanine nucleotide exchange factor 7-like isoform X3 [Cucumis sat... [more]
XP_008442490.11.9e-0675.00PREDICTED: rop guanine nucleotide exchange factor 7-like [Cucumis melo][more]
XP_010553054.11.9e-0664.00PREDICTED: rop guanine nucleotide exchange factor 7-like [Tarenaya hassleriana][more]
XP_011651877.11.9e-0672.50PREDICTED: rop guanine nucleotide exchange factor 7-like isoform X2 [Cucumis sat... [more]
Match NameE-valueIdentityDescription
AT5G02010.11.7e-0973.17RHO guanyl-nucleotide exchange factor 7[more]
AT5G05940.13.3e-0872.22ROP guanine nucleotide exchange factor 5[more]
AT4G38430.12.8e-0763.41rho guanyl-nucleotide exchange factor 1[more]
AT3G55660.16.1e-0760.98ROP (rho of plants) guanine nucleotide exchange factor 6[more]
AT1G01700.11.0e-0670.59RHO guanyl-nucleotide exchange factor 2[more]
Match NameE-valueIdentityDescription
sp|Q9LZN0|ROGF7_ARATH3.1e-0873.17Rop guanine nucleotide exchange factor 7 OS=Arabidopsis thaliana OX=3702 GN=ROPG... [more]
sp|F4K295|ROGF5_ARATH5.9e-0772.22Rop guanine nucleotide exchange factor 5 OS=Arabidopsis thaliana OX=3702 GN=ROPG... [more]
sp|Q93ZY2|ROGF1_ARATH5.0e-0663.41Rop guanine nucleotide exchange factor 1 OS=Arabidopsis thaliana OX=3702 GN=ROPG... [more]
sp|Q9M056|ROFG6_ARATH1.1e-0560.98Rop guanine nucleotide exchange factor 6 OS=Arabidopsis thaliana OX=3702 GN=ROPG... [more]
sp|Q9LQ89|ROGF2_ARATH1.9e-0570.59Rop guanine nucleotide exchange factor 2 OS=Arabidopsis thaliana OX=3702 GN=ROPG... [more]
Match NameE-valueIdentityDescription
tr|A0A0A0LAD8|A0A0A0LAD8_CUCSA7.4e-0775.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G733280 PE=4 SV=1[more]
tr|A0A1S3B5B2|A0A1S3B5B2_CUCME1.3e-0675.00rop guanine nucleotide exchange factor 7-like OS=Cucumis melo OX=3656 GN=LOC1034... [more]
tr|A0A022RS89|A0A022RS89_ERYGU1.7e-0674.36Uncharacterized protein OS=Erythranthe guttata OX=4155 GN=MIMGU_mgv1a004616mg PE... [more]
tr|A0A022QJE0|A0A022QJE0_ERYGU1.7e-0680.56Uncharacterized protein OS=Erythranthe guttata OX=4155 GN=MIMGU_mgv1a005948mg PE... [more]
tr|A0A2G2YLJ6|A0A2G2YLJ6_CAPAN2.2e-0678.38Uncharacterized protein OS=Capsicum annuum OX=4072 GN=T459_25565 PE=4 SV=1[more]
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005089Rho guanyl-nucleotide exchange factor activity
Vocabulary: INTERPRO
TermDefinition
IPR038937RopGEF
IPR005512PRONE_dom
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0065009 regulation of molecular function
cellular_component GO:0005575 cellular_component
molecular_function GO:0005089 Rho guanyl-nucleotide exchange factor activity

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy4G010450.1CsGy4G010450.1mRNA


Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005512PRONE domainPFAMPF03759PRONEcoord: 27..63
e-value: 2.6E-12
score: 46.2
IPR005512PRONE domainPROSITEPS51334PRONEcoord: 16..65
score: 13.667
NoneNo IPR availableGENE3DG3DSA:1.20.58.2010coord: 20..65
e-value: 3.9E-14
score: 54.4
NoneNo IPR availablePANTHERPTHR33101:SF14ROP GUANINE NUCLEOTIDE EXCHANGE FACTOR 7coord: 22..63
IPR038937Rop guanine nucleotide exchange factorPANTHERPTHR33101FAMILY NOT NAMEDcoord: 22..63

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None