CsGy4G009810 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy4G009810
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Uncharacterized protein
Location	Chr4 : 8193283 .. 8193633 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTACAACATTTTCAATACCAACCATGGCAATCCTCATTCTGACTCTACTGTTCAACCCAACCCGTTGCAACACAACCGTCAATGAGACAACATCGGAGTGGTGCTACGGGTCCGAGAATTGCCTCGTCGGCGATGAGAGCTTGGATTCGGAGTTTTTAATGGAGACAGAGACCAGCCGGATGCTGCTGGACTTTCAGAATTTACAAACTCCAGGCACTATAGACCCTAACAGACAATCGGTTGCAGAATGTGGGCGGCCGCCACGGTACGACAGCTGCACTGGAGAAGAAAGGCAGATCCCCAACCCTGAAAATTGTGACGTCCGAAATCGCGCGAATCCGTGTTAG

mRNA sequence

ATGGCTACAACATTTTCAATACCAACCATGGCAATCCTCATTCTGACTCTACTGTTCAACCCAACCCGTTGCAACACAACCGTCAATGAGACAACATCGGAGTGGTGCTACGGGTCCGAGAATTGCCTCGTCGGCGATGAGAGCTTGGATTCGGAGTTTTTAATGGAGACAGAGACCAGCCGGATGCTGCTGGACTTTCAGAATTTACAAACTCCAGGCACTATAGACCCTAACAGACAATCGGTTGCAGAATGTGGGCGGCCGCCACGGTACGACAGCTGCACTGGAGAAGAAAGGCAGATCCCCAACCCTGAAAATTGTGACGTCCGAAATCGCGCGAATCCGTGTTAG

Coding sequence (CDS)

ATGGCTACAACATTTTCAATACCAACCATGGCAATCCTCATTCTGACTCTACTGTTCAACCCAACCCGTTGCAACACAACCGTCAATGAGACAACATCGGAGTGGTGCTACGGGTCCGAGAATTGCCTCGTCGGCGATGAGAGCTTGGATTCGGAGTTTTTAATGGAGACAGAGACCAGCCGGATGCTGCTGGACTTTCAGAATTTACAAACTCCAGGCACTATAGACCCTAACAGACAATCGGTTGCAGAATGTGGGCGGCCGCCACGGTACGACAGCTGCACTGGAGAAGAAAGGCAGATCCCCAACCCTGAAAATTGTGACGTCCGAAATCGCGCGAATCCGTGTTAG

Protein sequence

MATTFSIPTMAILILTLLFNPTRCNTTVNETTSEWCYGSENCLVGDESLDSEFLMETETSRMLLDFQNLQTPGTIDPNRQSVAECGRPPRYDSCTGEERQIPNPENCDVRNRANPC

Homology

[Close]

BLAST of CsGy4G009810 vs. NCBI nr
Match: KGN53800.1 (hypothetical protein Csa_4G131140 [Cucumis sativus])

HSP 1 Score: 241.1 bits (614), Expect = 1.8e-60
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 0


Query: 1   MATTFSIPTMAILILTLLFNPTRCNTTVNETTSEWCYGSENCLVGDESLDSEFLMETETS 60
           MATTFSIPTMAILILTLLFNPTRCNTTVNETTSEWCYGSENCLVGDESLDSEFLMETETS
Sbjct: 1   MATTFSIPTMAILILTLLFNPTRCNTTVNETTSEWCYGSENCLVGDESLDSEFLMETETS 60

Query: 61  RMLLDFQNLQTPGTIDPNRQSVAECGRPPRYDSCTGEERQIPNPENCDVRNRANPC 117
           RMLLDFQNLQTPGTIDPNRQSVAECGRPPRYDSCTGEERQIPNPENCDVRNRANPC
Sbjct: 61  RMLLDFQNLQTPGTIDPNRQSVAECGRPPRYDSCTGEERQIPNPENCDVRNRANPC 116

[Close]

BLAST of CsGy4G009810 vs. NCBI nr
Match: KGN53798.1 (hypothetical protein Csa_4G130630 [Cucumis sativus])

HSP 1 Score: 127.9 bits (320), Expect = 2.3e-26
Identity = 67/119 (56.30%), Postives = 80/119 (67.23%), Query Frame = 0


Query: 1   MATTFSIPTMAILILTLLFNPTRCNTTVNETTSEWC--YGSENCLVGDESLDSEFLMETE 60
           MA T ++P+MA LI  LL NP   N  +N+T S+WC   G ENCLVGD +  SEFLM TE
Sbjct: 9   MAATLTMPSMAFLITILLLNPIISNAGMNDTESKWCDSTGLENCLVGDLNSHSEFLMLTE 68

Query: 61  TSRMLLD-FQNLQTPGTIDPNRQSVAECGRPPRYDSCTGEERQIPNPENCDVRNRANPC 117
           +S ML+D F   QTP   D N++SV +C RPPRYDSC G +R IPNPE C   NR NPC
Sbjct: 69  SSGMLVDQFLTFQTPKANDANKESVPDCSRPPRYDSCLGSKRSIPNPEPCSTLNRVNPC 127

[Close]

BLAST of CsGy4G009810 vs. NCBI nr
Match: XP_022948338.1 (uncharacterized protein LOC111452044 [Cucurbita moschata])

HSP 1 Score: 94.7 bits (234), Expect = 2.1e-16
Identity = 56/122 (45.90%), Postives = 69/122 (56.56%), Query Frame = 0


Query: 1   MATTFSIPTMAILILTLLFNPTRCNTTV------NETTSEWCYGSENCLVGDESLDSEFL 60
           MA    I   A+ I+ LL NPT  +         N+T++   Y     L+GD+ LDSEFL
Sbjct: 1   MAAAAVIIPAAMAIMILLLNPTTSDALTSFKPLNNDTSAAGKY-----LIGDQDLDSEFL 60

Query: 61  METETSRMLLDFQNLQTPGTIDPNRQSVAECGRPPRYDSCTGEERQIPNPENCDVRNRAN 117
           ME+  SR+L   QN QT  T D N+ S   CGRPPRYDSC G++   P PENC   NR N
Sbjct: 61  MESHISRILAGSQNFQTSKTNDANKASGGGCGRPPRYDSCLGQKSNNPPPENCGTFNRNN 117

[Close]

BLAST of CsGy4G009810 vs. NCBI nr
Match: XP_023523220.1 (uncharacterized protein LOC111787479 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 94.7 bits (234), Expect = 2.1e-16
Identity = 54/122 (44.26%), Postives = 70/122 (57.38%), Query Frame = 0


Query: 1   MATTFSIPTMAILILTLLFNPTRCNTTV------NETTSEWCYGSENCLVGDESLDSEFL 60
           MAT  ++   A+ I+ LL NP   +         N+T++   Y     L+GD+ +DSEFL
Sbjct: 1   MATAAAMIPAAMAIMILLLNPINSDALTSFKPLNNDTSAAGKY-----LIGDQDIDSEFL 60

Query: 61  METETSRMLLDFQNLQTPGTIDPNRQSVAECGRPPRYDSCTGEERQIPNPENCDVRNRAN 117
           ME+  SR+L   QN QT  T D N+ S   CGRPPRYDSC G++   P PENC   NR N
Sbjct: 61  MESHISRILAGSQNFQTSNTNDANKASGGGCGRPPRYDSCLGQKSNNPPPENCGTFNRNN 117

[Close]

BLAST of CsGy4G009810 vs. NCBI nr
Match: XP_022143399.1 (uncharacterized protein LOC111013278 [Momordica charantia])

HSP 1 Score: 92.0 bits (227), Expect = 1.4e-15
Identity = 53/112 (47.32%), Postives = 66/112 (58.93%), Query Frame = 0


Query: 7   IPTMAILILTLLFNPTRCN--TTVNETTSEWCYGSENCLVGDESLDSEFLMETETSRMLL 66
           IPT+  L + LL NP  C+  TT     +   +G+   L+GDE + SEFLME   SR+L 
Sbjct: 8   IPTVMALAI-LLPNPIDCDALTTSKRLLNNETWGNHKRLIGDEDIGSEFLMELHLSRILA 67

Query: 67  DFQNLQTPGTIDPNRQSVAECGRPPRYDSCTGEERQIPNPENCDVRNRANPC 117
           +    QT  T + N  SV +C RPPRYDSC GE+R  P  ENC   NRANPC
Sbjct: 68  ESLRFQTMTTPNANMGSVRDCERPPRYDSCLGEKRNTPPAENCGTFNRANPC 118

[Close]

BLAST of CsGy4G009810 vs. TrEMBL
Match: tr|A0A0A0KVZ2|A0A0A0KVZ2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G131140 PE=4 SV=1)

HSP 1 Score: 241.1 bits (614), Expect = 1.2e-60
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 0


Query: 1   MATTFSIPTMAILILTLLFNPTRCNTTVNETTSEWCYGSENCLVGDESLDSEFLMETETS 60
           MATTFSIPTMAILILTLLFNPTRCNTTVNETTSEWCYGSENCLVGDESLDSEFLMETETS
Sbjct: 1   MATTFSIPTMAILILTLLFNPTRCNTTVNETTSEWCYGSENCLVGDESLDSEFLMETETS 60

Query: 61  RMLLDFQNLQTPGTIDPNRQSVAECGRPPRYDSCTGEERQIPNPENCDVRNRANPC 117
           RMLLDFQNLQTPGTIDPNRQSVAECGRPPRYDSCTGEERQIPNPENCDVRNRANPC
Sbjct: 61  RMLLDFQNLQTPGTIDPNRQSVAECGRPPRYDSCTGEERQIPNPENCDVRNRANPC 116

[Close]

BLAST of CsGy4G009810 vs. TrEMBL
Match: tr|A0A0A0KW62|A0A0A0KW62_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G130630 PE=4 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 1.5e-26
Identity = 67/119 (56.30%), Postives = 80/119 (67.23%), Query Frame = 0


Query: 1   MATTFSIPTMAILILTLLFNPTRCNTTVNETTSEWC--YGSENCLVGDESLDSEFLMETE 60
           MA T ++P+MA LI  LL NP   N  +N+T S+WC   G ENCLVGD +  SEFLM TE
Sbjct: 9   MAATLTMPSMAFLITILLLNPIISNAGMNDTESKWCDSTGLENCLVGDLNSHSEFLMLTE 68

Query: 61  TSRMLLD-FQNLQTPGTIDPNRQSVAECGRPPRYDSCTGEERQIPNPENCDVRNRANPC 117
           +S ML+D F   QTP   D N++SV +C RPPRYDSC G +R IPNPE C   NR NPC
Sbjct: 69  SSGMLVDQFLTFQTPKANDANKESVPDCSRPPRYDSCLGSKRSIPNPEPCSTLNRVNPC 127

[Close]

BLAST of CsGy4G009810 vs. TrEMBL
Match: tr|A0A0A0LCJ4|A0A0A0LCJ4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G298580 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 7.3e-13
Identity = 45/117 (38.46%), Postives = 63/117 (53.85%), Query Frame = 0


Query: 2   ATTFSIPTMAILILTLLFNPTRCN--TTVNETTSEWCYGSENCLVGDESLDSEFLMETET 61
           A+   IP   + ++ LL  P+ C+  TT     S         ++G+E ++ EFLME+  
Sbjct: 3   ASALMIPAAVVTMILLLHIPSSCDALTTFQPLLSNHSSYGGKLMMGEEDMELEFLMESHI 62

Query: 62  SRMLLDFQNLQTPGTIDPNRQSVAECGRPPRYDSCTGEERQIPNPENCDVRNRANPC 117
           SR+L   +N QT  T + N+ S   C RPPRYDSC G++R      NC   NRANPC
Sbjct: 63  SRILASSKNYQTASTTNANKASGGGCDRPPRYDSCLGKKRNXXXXPNCSPYNRANPC 119

[Close]

BLAST of CsGy4G009810 vs. TrEMBL
Match: tr|A0A0A0L711|A0A0A0L711_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G298570 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 6.2e-12
Identity = 45/118 (38.14%), Postives = 62/118 (52.54%), Query Frame = 0


Query: 2   ATTFSIPTMAILILTLLFNPTRCN---TTVNETTSEWCYGSENCLVGDESLDSEFLMETE 61
           A    IP    ++L +L  PT C    T+     +    G    +V +E + S F+ME+ 
Sbjct: 4   APALMIPAAMAMMLMMLI-PTACGGALTSFKPLNNHTSGGLVKYMVEEEDIKSNFVMESH 63

Query: 62  TSRMLLDFQNLQTPGTIDPNRQSVAECGRPPRYDSCTGEERQIPNPENCDVRNRANPC 117
            SRML D Q+ +T  T +  + S  EC RPPRYDSC G +R  P P+NC   NR +PC
Sbjct: 64  ISRMLADSQDFETSSTNNATQVSAGECDRPPRYDSCLGVKRNTPPPQNCSTFNREHPC 120

[Close]

BLAST of CsGy4G009810 vs. TrEMBL
Match: tr|A0A0A0L9X5|A0A0A0L9X5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G298070 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 8.9e-11
Identity = 51/118 (43.22%), Postives = 67/118 (56.78%), Query Frame = 0


Query: 2   ATTFSIPTMAILILTLLFNPTRCNTTV-NETTSEWCYGSENCLVGDESLDSEFLMETETS 61
           A T SI T  + I+TLL     C+  + ++            L+GD  +D++FLME+  S
Sbjct: 3   AATLSIRT-TLAIVTLLLVAVGCDAFIASKPVFNLSSDLGKRLIGD--IDTDFLMESHVS 62

Query: 62  RML--LDFQNLQTPGTIDPNRQSVAECGRPPRYDSCTGEERQIPNPENCDVRNRANPC 117
           R+L  L F+ ++TP   + N  SV  C RPPRYDSC GE R  P  ENCD  NRANPC
Sbjct: 63  RILAELRFETMRTP---NANSASVVNCERPPRYDSCLGEARDNPPSENCDPYNRANPC 114

The following BLAST results are available for this feature:

BLAST of CsGy4G009810 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN53800.1	1.8e-60	100.00	hypothetical protein Csa_4G131140 [Cucumis sativus]	[more]
KGN53798.1	2.3e-26	56.30	hypothetical protein Csa_4G130630 [Cucumis sativus]	[more]
XP_022948338.1	2.1e-16	45.90	uncharacterized protein LOC111452044 [Cucurbita moschata]	[more]
XP_023523220.1	2.1e-16	44.26	uncharacterized protein LOC111787479 [Cucurbita pepo subsp. pepo]	[more]
XP_022143399.1	1.4e-15	47.32	uncharacterized protein LOC111013278 [Momordica charantia]	[more]

BLAST of CsGy4G009810 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsGy4G009810 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy4G009810 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KVZ2\|A0A0A0KVZ2_CUCSA	1.2e-60	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G131140 PE=4 SV=1	[more]
tr\|A0A0A0KW62\|A0A0A0KW62_CUCSA	1.5e-26	56.30	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G130630 PE=4 SV=1	[more]
tr\|A0A0A0LCJ4\|A0A0A0LCJ4_CUCSA	7.3e-13	38.46	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G298580 PE=4 SV=1	[more]
tr\|A0A0A0L711\|A0A0A0L711_CUCSA	6.2e-12	38.14	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G298570 PE=4 SV=1	[more]
tr\|A0A0A0L9X5\|A0A0A0L9X5_CUCSA	8.9e-11	43.22	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G298070 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy4G009810.1	CsGy4G009810.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 92..116

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy4G009810	Cucumber (Gy14) v2	cgybcgybB024
CsGy4G009810	Cucurbita maxima (Rimu)	cgybcmaB483
CsGy4G009810	Cucurbita maxima (Rimu)	cgybcmaB487
CsGy4G009810	Cucurbita maxima (Rimu)	cgybcmaB517
CsGy4G009810	Cucurbita moschata (Rifu)	cgybcmoB443
CsGy4G009810	Cucurbita moschata (Rifu)	cgybcmoB453
CsGy4G009810	Cucurbita moschata (Rifu)	cgybcmoB457
CsGy4G009810	Cucurbita moschata (Rifu)	cgybcmoB488
CsGy4G009810	Cucurbita pepo (Zucchini)	cgybcpeB500
CsGy4G009810	Cucurbita pepo (Zucchini)	cgybcpeB538
CsGy4G009810	Cucurbita pepo (Zucchini)	cgybcpeB542
CsGy4G009810	Cucurbita pepo (Zucchini)	cgybcpeB554
CsGy4G009810	Cucumber (Chinese Long) v2	cgybcuB157
CsGy4G009810	Cucumber (Chinese Long) v2	cgybcuB165
CsGy4G009810	Bottle gourd (USVL1VR-Ls)	cgyblsiB286
CsGy4G009810	Melon (DHL92) v3.5.1	cgybmeB234
CsGy4G009810	Melon (DHL92) v3.5.1	cgybmeB241
CsGy4G009810	Melon (DHL92) v3.5.1	cgybmeB272
CsGy4G009810	Melon (DHL92) v3.6.1	cgybmedB235
CsGy4G009810	Melon (DHL92) v3.6.1	cgybmedB240
CsGy4G009810	Melon (DHL92) v3.6.1	cgybmedB269
CsGy4G009810	Watermelon (Charleston Gray)	cgybwcgB277
CsGy4G009810	Watermelon (Charleston Gray)	cgybwcgB306
CsGy4G009810	Watermelon (97103) v1	cgybwmB285
CsGy4G009810	Watermelon (97103) v1	cgybwmB310
CsGy4G009810	Watermelon (97103) v1	cgybwmB334
CsGy4G009810	Wild cucumber (PI 183967)	cgybcpiB160
CsGy4G009810	Wild cucumber (PI 183967)	cgybcpiB168
CsGy4G009810	Cucumber (Chinese Long) v3	cgybcucB164
CsGy4G009810	Cucumber (Chinese Long) v3	cgybcucB171
CsGy4G009810	Watermelon (97103) v2	cgybwmbB308
CsGy4G009810	Watermelon (97103) v2	cgybwmbB279
CsGy4G009810	Watermelon (97103) v2	cgybwmbB296
CsGy4G009810	Wax gourd	cgybwgoB356
CsGy4G009810	Wax gourd	cgybwgoB358
CsGy4G009810	Wax gourd	cgybwgoB394
CsGy4G009810	Wax gourd	cgybwgoB405