CsGy4G008980 (gene) Cucumber (Gy14) v2

Overview
NameCsGy4G008980
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
Descriptionnuclear pore complex protein NUP98A-like
LocationChr4 : 7134008 .. 7136328 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTCTGGGTCTTCCCAGACACCACAAGTAGTGCATGGAGTTGCTTAGCAAGGTGTACTTTTGTGCAGTAAAGGAAAATTCGGTTGAAATCAATCTCCCTTTTCTCATTTTCAACTCCATCCAAATATTTGGGAGCAGCGGTTGCAGAATACAGAGAACAAGCTTGGAATGAAGGCTTGAACAAGGAAACCCGTCTCCATTTACATTGCAGAAATCTGAGAACAATAGAAGGGGAAAGACATTTTTTGTCAATAACTTTCAGTAATTGACAAGCAACTATCTTGAATCAAAGCAGGAAAGGAAAAACAAACAAACAAATTTTTTTTGACATGCTGTAAACAATGCTGAGGATCAAGAAGTAAAGATGATCTATATTTTTTTAAAAGGAAAACAAGTCTCTTTTATTAATGATAATAATGAGACAAAAGCTCAAAACACAAAAGATACACTGAGCAAAAGAACCTAGGGATCAAAGACGCACCTGGACATTTCAACCAGGTTGACACCCCTTTAGCGTCATCATCATATCCGTACAAACTAGTAAATACTTGAAAACTAAGGCCAAACACACGGCCTCTGCGGCATAAATAAGAATGTATGAAAATCAAAGGAAACAAACCCGAATACACAGAATATACAAACTGTCTAGTAACACAATTACGTCAAATAGGAGACCAAGTATCCCTAAACCCTGGTTAGTTTGCTGAAATGAAGGCAGTCCAATTCAGGTTTAGCTTAGAAATGCTGTACATATCAAACTTCTTAGATAAAAAGCACCACGATAAAGTGTTTATATGAGTAACTTCAAAACAATCTATCCGACAAAGAGATTTGTTTTGAAAAGTAAAGATGATTTATAGATTCCTTGAAATTAGACACCCTGCTAAATTTAATCTTAATTCATAGGATCGAAAGTAGAAGTGTTGGATGTTTGAGCTGCTACTTGAAATATTGCACAGCATTTGCTTTGTTGATCATATAGCATAAAGAGAGTGAGAAACTATACAGACAAGAGTGATAAGAATGCTATTAGGTAGGGTGAGCATTGGTATGTCGAAGTCGGTTTTTCGACCAAACCGACTATCGTCAGTTTAATAAATGTTCAAACTGACTCTGACCATGAAGGAGTGCAAACCGATTGTTTGCCAGTCGATCGATTGGTTTCTGTTGATTTAAACCTTTGAAATTCTTTTAAAATGTTGTCGGTTTGGATTTTTCCTAGCTCGATGCCGATCAAACCTCTTCTTATCTCCGATTGACCATGTTTGTTTCAGTCGATCGACTCAGTTTTTCAATCTATCATACTCGACCTTACTATTAGGATGGAATTAGAAATGTTATTAGGATGGAATTAGGAATGTTATCGGGACATTGAGGGCATGTCAATAGTTGGAAAAGTTCTTAGAATTATTATAAACTATTAAACCAACAATTCACTCAAAGGCTTAAACTGGTGGTTGAAGGCAATTTAAATATATATCACCAACACTCCCCTAACTTTATGCCTCACCACCTATCTCACAAAAAGTCGAGATTGCCTGCGAGAAAATATAACCCTAAGAATGATGGCAGTCCAAGCGTTTCATTTTTCAGTGATGATGAAGAAACACCAAGCACTCCAAAGGCCGATGCTCTTTTTATTCCCAGAGAGAATCCTAGAGCATTGGTTATTCGTCCCACGGATCAGTGGCCTTCAAAAGCCAATTTAGATAAAAGTTTGCCATCGAAGGGCACGTCAGTACGTGAAAATGGGAAGGTTGCTGAACGTACTTCCTCGGCCATCAACAATTTGAAGGATACCAATGGAAATGTTGTTGACAATGGTATTAGCAAAGAGAACATCCATCTCAACAAAGTTAACCAAAAACCGAATGGGGTCCATGAGGACTTCTATAGGACATTTGTAGGACACAGAGCTGGTGAGGCTGCCATTGTTTATGAACATGGGACAGATATTGAGGCATTAATGCCAAAGCTTCTGCATTCGGACTATTATACCAAGCCAAAGATTCAAGAATTAGCAGCCAAAGAAAGGGCCGAACCTGGGTTTTGTCGCCATGTTAAAGATTTTGTGGTGGGTCGCCATGGTTATGGAAGCATCAAATTCTTTGGTGAAACAGACGTGCGAAAGCTCGATCTAGAATCCATTGTTCAGTTTAACAATCGTGAGGTGATTGTCTACCTTGATGAGAGTAAAAAACCTCCTTGTGGGCAAGGTCTGAATAAGCCTGCTGAAGTAACAATACTCAACACCAAATGTGTAGACAAGCAAACTGTGCATCGATATACCGAAGGGCCTAAAGTTGCGAAGTACAAGTAG

mRNA sequence

ATGCTCTGGGTCTTCCCAGACACCACAAGTAGTGCATGGAGTTGCTTAGCAAGTGATGATGAAGAAACACCAAGCACTCCAAAGGCCGATGCTCTTTTTATTCCCAGAGAGAATCCTAGAGCATTGGTTATTCGTCCCACGGATCAGTGGCCTTCAAAAGCCAATTTAGATAAAAGTTTGCCATCGAAGGGCACGTCAGTACGTGAAAATGGGAAGGTTGCTGAACGTACTTCCTCGGCCATCAACAATTTGAAGGATACCAATGGAAATGTTGTTGACAATGGTATTAGCAAAGAGAACATCCATCTCAACAAAGTTAACCAAAAACCGAATGGGGTCCATGAGGACTTCTATAGGACATTTGTAGGACACAGAGCTGGTGAGGCTGCCATTGTTTATGAACATGGGACAGATATTGAGGCATTAATGCCAAAGCTTCTGCATTCGGACTATTATACCAAGCCAAAGATTCAAGAATTAGCAGCCAAAGAAAGGGCCGAACCTGGGTTTTGTCGCCATGTTAAAGATTTTGTGGTGGGTCGCCATGGTTATGGAAGCATCAAATTCTTTGGTGAAACAGACGTGCGAAAGCTCGATCTAGAATCCATTGTTCAGTTTAACAATCGTGAGGTGATTGTCTACCTTGATGAGAGTAAAAAACCTCCTTGTGGGCAAGGTCTGAATAAGCCTGCTGAAGTAACAATACTCAACACCAAATGTGTAGACAAGCAAACTGTGCATCGATATACCGAAGGGCCTAAAGTTGCGAAGTACAAGTAG

Coding sequence (CDS)

ATGCTCTGGGTCTTCCCAGACACCACAAGTAGTGCATGGAGTTGCTTAGCAAGTGATGATGAAGAAACACCAAGCACTCCAAAGGCCGATGCTCTTTTTATTCCCAGAGAGAATCCTAGAGCATTGGTTATTCGTCCCACGGATCAGTGGCCTTCAAAAGCCAATTTAGATAAAAGTTTGCCATCGAAGGGCACGTCAGTACGTGAAAATGGGAAGGTTGCTGAACGTACTTCCTCGGCCATCAACAATTTGAAGGATACCAATGGAAATGTTGTTGACAATGGTATTAGCAAAGAGAACATCCATCTCAACAAAGTTAACCAAAAACCGAATGGGGTCCATGAGGACTTCTATAGGACATTTGTAGGACACAGAGCTGGTGAGGCTGCCATTGTTTATGAACATGGGACAGATATTGAGGCATTAATGCCAAAGCTTCTGCATTCGGACTATTATACCAAGCCAAAGATTCAAGAATTAGCAGCCAAAGAAAGGGCCGAACCTGGGTTTTGTCGCCATGTTAAAGATTTTGTGGTGGGTCGCCATGGTTATGGAAGCATCAAATTCTTTGGTGAAACAGACGTGCGAAAGCTCGATCTAGAATCCATTGTTCAGTTTAACAATCGTGAGGTGATTGTCTACCTTGATGAGAGTAAAAAACCTCCTTGTGGGCAAGGTCTGAATAAGCCTGCTGAAGTAACAATACTCAACACCAAATGTGTAGACAAGCAAACTGTGCATCGATATACCGAAGGGCCTAAAGTTGCGAAGTACAAGTAG

Protein sequence

MLWVFPDTTSSAWSCLASDDEETPSTPKADALFIPRENPRALVIRPTDQWPSKANLDKSLPSKGTSVRENGKVAERTSSAINNLKDTNGNVVDNGISKENIHLNKVNQKPNGVHEDFYRTFVGHRAGEAAIVYEHGTDIEALMPKLLHSDYYTKPKIQELAAKERAEPGFCRHVKDFVVGRHGYGSIKFFGETDVRKLDLESIVQFNNREVIVYLDESKKPPCGQGLNKPAEVTILNTKCVDKQTVHRYTEGPKVAKYK
Homology
[Close]
BLAST of CsGy4G008980 vs. NCBI nr
Match: XP_011653376.1 (PREDICTED: nuclear pore complex protein NUP98A-like [Cucumis sativus] >KGN53702.1 hypothetical protein Csa_4G107440 [Cucumis sativus])

HSP 1 Score: 483.0 bits (1242), Expect = 6.2e-133
Identity = 237/242 (97.93%), Postives = 238/242 (98.35%), Query Frame = 0 

Query: 18  SDDEETPSTPKADALFIPRENPRALVIRPTDQWPSKANLDKSLPSKGTSVRENGKVAERT 77
           SDDEETPSTPKADALFIPRENPRALVIRPTDQWPSKANLDKSLPSKGTSVRENGKVAERT
Sbjct: 31  SDDEETPSTPKADALFIPRENPRALVIRPTDQWPSKANLDKSLPSKGTSVRENGKVAERT 90

Query: 78  SSAINNLKDTNGNVVDNGISKENIHLNKVNQKPNGVHEDFYRTFVGHRAGEAAIVYEHGT 137
           SSAINNLKDTNGNVVDNGISKENIHLNKV+QKPNGVHEDFYRTFVGHRAGEAAIVYEHGT
Sbjct: 91  SSAINNLKDTNGNVVDNGISKENIHLNKVSQKPNGVHEDFYRTFVGHRAGEAAIVYEHGT 150

Query: 138 DIEALMPKLLHSDYYTKPKIQELAAKERAEPGFCRHVKDFVVGRHGYGSIKFFGETDVRK 197
           DIEALMPKLLHSDYYT PKIQELAAKERAEPG CRHVKDFVVGRHGYGSIKFFGETDVRK
Sbjct: 151 DIEALMPKLLHSDYYTMPKIQELAAKERAEPGLCRHVKDFVVGRHGYGSIKFFGETDVRK 210

Query: 198 LDLESIVQFNNREVIVYLDESKKPPCGQGLNKPAEVTILNTKCVDKQTVHRYTEGPKVAK 257
           LDLESIVQFNNREVIVYLDESK PPCGQ LNKPAEVTILNTKCVDKQTVHRYTEGPKVAK
Sbjct: 211 LDLESIVQFNNREVIVYLDESKNPPCGQALNKPAEVTILNTKCVDKQTVHRYTEGPKVAK 270

Query: 258 YK 260
           YK
Sbjct: 271 YK 272

[Close]
BLAST of CsGy4G008980 vs. NCBI nr
Match: XP_008462776.1 (PREDICTED: nuclear pore complex protein NUP98A-like [Cucumis melo] >XP_016902936.1 PREDICTED: nuclear pore complex protein NUP98A-like [Cucumis melo])

HSP 1 Score: 459.5 bits (1181), Expect = 7.4e-126
Identity = 226/249 (90.76%), Postives = 234/249 (93.98%), Query Frame = 0 

Query: 18  SDDEETPSTPKADALFIPRENPRALVIRPTDQWPSKANLDKSLPSKGTSVRENGKVAERT 77
           SDDEETPSTPKADALFIPRENPRALVIRPTDQWPSKANLDKSLPSK TSVRENGK+AERT
Sbjct: 751 SDDEETPSTPKADALFIPRENPRALVIRPTDQWPSKANLDKSLPSKDTSVRENGKIAERT 810

Query: 78  SSAINNLKDTNGNVVDNGISKENIHLNKVNQKPNGVHED-------FYRTFVGHRAGEAA 137
           SSA+NNLKDTNGNVV+NGI+KE+IHLNKVNQKPNGVHED        YRTF GHRAGEAA
Sbjct: 811 SSAVNNLKDTNGNVVENGINKESIHLNKVNQKPNGVHEDHSAPKEELYRTFAGHRAGEAA 870

Query: 138 IVYEHGTDIEALMPKLLHSDYYTKPKIQELAAKERAEPGFCRHVKDFVVGRHGYGSIKFF 197
           IVYEHG DIEALMPKL HSDYYT+PKIQELAAKERAEPGFCRHVKDFVVGRHGYGSIKFF
Sbjct: 871 IVYEHGADIEALMPKLRHSDYYTEPKIQELAAKERAEPGFCRHVKDFVVGRHGYGSIKFF 930

Query: 198 GETDVRKLDLESIVQFNNREVIVYLDESKKPPCGQGLNKPAEVTILNTKCVDKQTVHRYT 257
           GETDVR+LDLESIVQFNNREVIVYLDESKKPPCGQGLNKPAEVTILN KCVDKQT H+YT
Sbjct: 931 GETDVRRLDLESIVQFNNREVIVYLDESKKPPCGQGLNKPAEVTILNIKCVDKQTGHQYT 990

Query: 258 EGPKVAKYK 260
           EGPKV KYK
Sbjct: 991 EGPKVEKYK 999

[Close]
BLAST of CsGy4G008980 vs. NCBI nr
Match: XP_011650063.1 (PREDICTED: nuclear pore complex protein NUP98A-like [Cucumis sativus] >KGN63375.1 hypothetical protein Csa_2G433410 [Cucumis sativus])

HSP 1 Score: 458.0 bits (1177), Expect = 2.1e-125
Identity = 226/249 (90.76%), Postives = 232/249 (93.17%), Query Frame = 0 

Query: 18  SDDEETPSTPKADALFIPRENPRALVIRPTDQWPSKANLDKSLPSKGTSVRENGKVAERT 77
           SDDEETPSTPKADALFIPRENPRALVIRPTDQWPSK NLDKSLPSK TSVRENGKVAERT
Sbjct: 743 SDDEETPSTPKADALFIPRENPRALVIRPTDQWPSKGNLDKSLPSKDTSVRENGKVAERT 802

Query: 78  SSAINNLKDTNGNVVDNGISKENIHLNKVNQKPNGVH-------EDFYRTFVGHRAGEAA 137
           SSA+NNLKDTNGNVV+NG SKENIHLN+VNQKPNGVH       ED YRTF GHRAGEAA
Sbjct: 803 SSAVNNLKDTNGNVVENGTSKENIHLNEVNQKPNGVHEDHSAPKEDLYRTFAGHRAGEAA 862

Query: 138 IVYEHGTDIEALMPKLLHSDYYTKPKIQELAAKERAEPGFCRHVKDFVVGRHGYGSIKFF 197
           IVYEHG DIEALMPKL HSDYYT+PKIQELAAKERAEPGFCRHVKDFVVGRHGYGSIKFF
Sbjct: 863 IVYEHGADIEALMPKLRHSDYYTEPKIQELAAKERAEPGFCRHVKDFVVGRHGYGSIKFF 922

Query: 198 GETDVRKLDLESIVQFNNREVIVYLDESKKPPCGQGLNKPAEVTILNTKCVDKQTVHRYT 257
           GETDVR+LDLESIVQFNNREVIVYLDESKKPPCGQGLNKPAEVTILN KCVDKQT H+YT
Sbjct: 923 GETDVRRLDLESIVQFNNREVIVYLDESKKPPCGQGLNKPAEVTILNIKCVDKQTGHQYT 982

Query: 258 EGPKVAKYK 260
           EGPKV KYK
Sbjct: 983 EGPKVEKYK 991

[Close]
BLAST of CsGy4G008980 vs. NCBI nr
Match: XP_022943868.1 (nuclear pore complex protein NUP98A-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 431.4 bits (1108), Expect = 2.2e-117
Identity = 214/250 (85.60%), Postives = 230/250 (92.00%), Query Frame = 0 

Query: 18  SDDEETPSTPKADALFIPRENPRALVIRPTDQWPSKANLDKSLPSKGTSVRENGKVAERT 77
           SDDEETPSTPKADALFIPRENPRALVIRPTDQWPS+A+L+K+LPSK TSVRENGK+AE T
Sbjct: 738 SDDEETPSTPKADALFIPRENPRALVIRPTDQWPSRASLEKALPSKDTSVRENGKIAEDT 797

Query: 78  -SSAINNLKDTNGNVVDNGISKENIHLNKVNQKPNGVHEDF-------YRTFVGHRAGEA 137
            SSA+NNLKDTNGNVV+NG  K+NIH+NKVNQKPNGVHED        YRTF G+RAGEA
Sbjct: 798 SSSAVNNLKDTNGNVVENGSCKDNIHVNKVNQKPNGVHEDHPASKEDCYRTFGGYRAGEA 857

Query: 138 AIVYEHGTDIEALMPKLLHSDYYTKPKIQELAAKERAEPGFCRHVKDFVVGRHGYGSIKF 197
           AIVYEHG DIEALMPKL HSDYYT+PKIQELAAKERAEPGFCR VKDFVVGRHGYGSIKF
Sbjct: 858 AIVYEHGADIEALMPKLRHSDYYTEPKIQELAAKERAEPGFCRRVKDFVVGRHGYGSIKF 917

Query: 198 FGETDVRKLDLESIVQFNNREVIVYLDESKKPPCGQGLNKPAEVTILNTKCVDKQTVHRY 257
           FGETDVR+LDLESIVQFNNREVIVYLDESKKPPCGQGLNKPAEVTILN KC+DKQ+ ++Y
Sbjct: 918 FGETDVRRLDLESIVQFNNREVIVYLDESKKPPCGQGLNKPAEVTILNIKCIDKQSGNQY 977

Query: 258 TEGPKVAKYK 260
           TEGPKV KYK
Sbjct: 978 TEGPKVEKYK 987

[Close]
BLAST of CsGy4G008980 vs. NCBI nr
Match: XP_022943867.1 (nuclear pore complex protein NUP98A-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 431.4 bits (1108), Expect = 2.2e-117
Identity = 214/250 (85.60%), Postives = 230/250 (92.00%), Query Frame = 0 

Query: 18   SDDEETPSTPKADALFIPRENPRALVIRPTDQWPSKANLDKSLPSKGTSVRENGKVAERT 77
            SDDEETPSTPKADALFIPRENPRALVIRPTDQWPS+A+L+K+LPSK TSVRENGK+AE T
Sbjct: 801  SDDEETPSTPKADALFIPRENPRALVIRPTDQWPSRASLEKALPSKDTSVRENGKIAEDT 860

Query: 78   -SSAINNLKDTNGNVVDNGISKENIHLNKVNQKPNGVHEDF-------YRTFVGHRAGEA 137
             SSA+NNLKDTNGNVV+NG  K+NIH+NKVNQKPNGVHED        YRTF G+RAGEA
Sbjct: 861  SSSAVNNLKDTNGNVVENGSCKDNIHVNKVNQKPNGVHEDHPASKEDCYRTFGGYRAGEA 920

Query: 138  AIVYEHGTDIEALMPKLLHSDYYTKPKIQELAAKERAEPGFCRHVKDFVVGRHGYGSIKF 197
            AIVYEHG DIEALMPKL HSDYYT+PKIQELAAKERAEPGFCR VKDFVVGRHGYGSIKF
Sbjct: 921  AIVYEHGADIEALMPKLRHSDYYTEPKIQELAAKERAEPGFCRRVKDFVVGRHGYGSIKF 980

Query: 198  FGETDVRKLDLESIVQFNNREVIVYLDESKKPPCGQGLNKPAEVTILNTKCVDKQTVHRY 257
            FGETDVR+LDLESIVQFNNREVIVYLDESKKPPCGQGLNKPAEVTILN KC+DKQ+ ++Y
Sbjct: 981  FGETDVRRLDLESIVQFNNREVIVYLDESKKPPCGQGLNKPAEVTILNIKCIDKQSGNQY 1040

Query: 258  TEGPKVAKYK 260
            TEGPKV KYK
Sbjct: 1041 TEGPKVEKYK 1050

[Close]
BLAST of CsGy4G008980 vs. TAIR10
Match: AT1G10390.1 (Nucleoporin autopeptidase)

HSP 1 Score: 307.8 bits (787), Expect = 6.5e-84
Identity = 162/255 (63.53%), Postives = 192/255 (75.29%), Query Frame = 0 

Query: 18  SDDEETPSTPKADALFIPRENPRALVIRPTDQWPSKANLDKSLPSK----GTSVRENGKV 77
           +DDEE+ STPKADALFIPRENPRALVIRP  QW S+   DKS+  K       + +NGK 
Sbjct: 748 TDDEESSSTPKADALFIPRENPRALVIRPVQQWSSR---DKSILPKEQRPTAPLHDNGKS 807

Query: 78  AERTSSAINNLKDTNGNVVDNGISKENIHLN-KVNQKPNGV--------HEDFYRTFVGH 137
            +  + A N+ ++ NG +   G + E IH +   NQKPNG          E  Y+T  GH
Sbjct: 808 PDMATDAANHDRNGNGEL---GATGERIHTSVNANQKPNGTTRSDQASEKERPYKTLSGH 867

Query: 138 RAGEAAIVYEHGTDIEALMPKLLHSDYYTKPKIQELAAKERAEPGFCRHVKDFVVGRHGY 197
           RAGEAAIVYEHG DIEALMPKL  SDY+T+P+IQELAAKERA+PG+CR V+DFVVGRHGY
Sbjct: 868 RAGEAAIVYEHGADIEALMPKLRQSDYFTEPRIQELAAKERADPGYCRRVRDFVVGRHGY 927

Query: 198 GSIKFFGETDVRKLDLESIVQFNNREVIVYLDESKKPPCGQGLNKPAEVTILNTKCVDKQ 257
           GSIKF GETDVR+LDLES+VQFN REVIVY+DESKKP  GQGLNKPAEVT+LN KC+DK+
Sbjct: 928 GSIKFMGETDVRRLDLESLVQFNTREVIVYMDESKKPAVGQGLNKPAEVTLLNIKCIDKK 987

Query: 258 TVHRYTEGPKVAKYK 260
           T  ++TEG +V KYK
Sbjct: 988 TGKQFTEGERVEKYK 996

[Close]
BLAST of CsGy4G008980 vs. TAIR10
Match: AT1G59660.1 (Nucleoporin autopeptidase)

HSP 1 Score: 247.3 bits (630), Expect = 1.0e-65
Identity = 137/242 (56.61%), Postives = 166/242 (68.60%), Query Frame = 0 

Query: 18  SDDEETPSTPKADALFIPRENPRALVIRPTDQWPSKANLDKSLPSKGTSVRENGKVAERT 77
           SD+EE  STPKADA FIPRENPRAL IRP ++  S+   D   P     ++ENGK     
Sbjct: 732 SDEEENSSTPKADAFFIPRENPRALFIRPVERVKSEHPKDSPTP-----LQENGK----R 791

Query: 78  SSAINNLKDTNGNVVDNGISKENIHLNKVNQKPNGVHEDFYRTFVGHRAGEAAIVYEHGT 137
           S+ + N    N    DNG  +E   + KVNQK NG HE+      G  +  +      G 
Sbjct: 792 SNGVTN--GANHETKDNGAIREAPPV-KVNQKQNGTHENHGGDKNGSHSSPS------GA 851

Query: 138 DIEALMPKLLHSDYYTKPKIQELAAKERAEPGFCRHVKDFVVGRHGYGSIKFFGETDVRK 197
           DIE+LMPKL HS+Y+T+P+IQELAAKER E G+C+ VKDFVVGRHGYGSIKF GETDV +
Sbjct: 852 DIESLMPKLHHSEYFTEPRIQELAAKERVEQGYCKRVKDFVVGRHGYGSIKFLGETDVCR 911

Query: 198 LDLESIVQFNNREVIVYLDESKKPPCGQGLNKPAEVTILNTKCVDKQTVHRYTEGPKVAK 257
           LDLE +VQF NREV VY+DESKKPP GQGLNKPA VT+LN KC+DK+T  +  EG ++ K
Sbjct: 912 LDLEMVVQFKNREVNVYMDESKKPPVGQGLNKPAVVTLLNIKCMDKKTGTQVMEGERLDK 955

Query: 258 YK 260
           YK
Sbjct: 972 YK 955

[Close]
BLAST of CsGy4G008980 vs. TAIR10
Match: AT1G80680.1 (SUPPRESSOR OF AUXIN RESISTANCE 3)

HSP 1 Score: 117.1 bits (292), Expect = 1.6e-26
Identity = 56/107 (52.34%), Postives = 71/107 (66.36%), Query Frame = 0 

Query: 130 AIVYEHGTDIEALMPKLLHSDYYTKPKIQELAAKERAEPGFCRHVKDFVVGRHGYGSIKF 189
           A + EH  +I   +P L   DY+ KP I EL  +E   P +C  V DF +GR GYG I+F
Sbjct: 33  AALCEHSKEIIDSLPMLNSPDYFLKPCINELVEREIESPDYCSRVPDFTIGRIGYGYIRF 92

Query: 190 FGETDVRKLDLESIVQFNNREVIVYLDESKKPPCGQGLNKPAEVTIL 237
            G TDVR+LDL+ IV+F+  EVIVY DES KP  G+GLNK AEVT++
Sbjct: 93  LGNTDVRRLDLDHIVKFHRHEVIVYDDESSKPVVGEGLNKAAEVTLV 139

[Close]
BLAST of CsGy4G008980 vs. Swiss-Prot
Match: sp|Q8RY25|NU98A_ARATH (Nuclear pore complex protein NUP98A OS=Arabidopsis thaliana OX=3702 GN=NUP98A PE=1 SV=1)

HSP 1 Score: 307.8 bits (787), Expect = 1.2e-82
Identity = 162/255 (63.53%), Postives = 192/255 (75.29%), Query Frame = 0 

Query: 18  SDDEETPSTPKADALFIPRENPRALVIRPTDQWPSKANLDKSLPSK----GTSVRENGKV 77
           +DDEE+ STPKADALFIPRENPRALVIRP  QW S+   DKS+  K       + +NGK 
Sbjct: 748 TDDEESSSTPKADALFIPRENPRALVIRPVQQWSSR---DKSILPKEQRPTAPLHDNGKS 807

Query: 78  AERTSSAINNLKDTNGNVVDNGISKENIHLN-KVNQKPNGV--------HEDFYRTFVGH 137
            +  + A N+ ++ NG +   G + E IH +   NQKPNG          E  Y+T  GH
Sbjct: 808 PDMATDAANHDRNGNGEL---GATGERIHTSVNANQKPNGTTRSDQASEKERPYKTLSGH 867

Query: 138 RAGEAAIVYEHGTDIEALMPKLLHSDYYTKPKIQELAAKERAEPGFCRHVKDFVVGRHGY 197
           RAGEAAIVYEHG DIEALMPKL  SDY+T+P+IQELAAKERA+PG+CR V+DFVVGRHGY
Sbjct: 868 RAGEAAIVYEHGADIEALMPKLRQSDYFTEPRIQELAAKERADPGYCRRVRDFVVGRHGY 927

Query: 198 GSIKFFGETDVRKLDLESIVQFNNREVIVYLDESKKPPCGQGLNKPAEVTILNTKCVDKQ 257
           GSIKF GETDVR+LDLES+VQFN REVIVY+DESKKP  GQGLNKPAEVT+LN KC+DK+
Sbjct: 928 GSIKFMGETDVRRLDLESLVQFNTREVIVYMDESKKPAVGQGLNKPAEVTLLNIKCIDKK 987

Query: 258 TVHRYTEGPKVAKYK 260
           T  ++TEG +V KYK
Sbjct: 988 TGKQFTEGERVEKYK 996

[Close]
BLAST of CsGy4G008980 vs. Swiss-Prot
Match: sp|F4ID16|NU98B_ARATH (Nuclear pore complex protein NUP98B OS=Arabidopsis thaliana OX=3702 GN=NUP98B PE=1 SV=1)

HSP 1 Score: 247.3 bits (630), Expect = 1.9e-64
Identity = 137/242 (56.61%), Postives = 166/242 (68.60%), Query Frame = 0 

Query: 18  SDDEETPSTPKADALFIPRENPRALVIRPTDQWPSKANLDKSLPSKGTSVRENGKVAERT 77
           SD+EE  STPKADA FIPRENPRAL IRP ++  S+   D   P     ++ENGK     
Sbjct: 732 SDEEENSSTPKADAFFIPRENPRALFIRPVERVKSEHPKDSPTP-----LQENGK----R 791

Query: 78  SSAINNLKDTNGNVVDNGISKENIHLNKVNQKPNGVHEDFYRTFVGHRAGEAAIVYEHGT 137
           S+ + N    N    DNG  +E   + KVNQK NG HE+      G  +  +      G 
Sbjct: 792 SNGVTN--GANHETKDNGAIREAPPV-KVNQKQNGTHENHGGDKNGSHSSPS------GA 851

Query: 138 DIEALMPKLLHSDYYTKPKIQELAAKERAEPGFCRHVKDFVVGRHGYGSIKFFGETDVRK 197
           DIE+LMPKL HS+Y+T+P+IQELAAKER E G+C+ VKDFVVGRHGYGSIKF GETDV +
Sbjct: 852 DIESLMPKLHHSEYFTEPRIQELAAKERVEQGYCKRVKDFVVGRHGYGSIKFLGETDVCR 911

Query: 198 LDLESIVQFNNREVIVYLDESKKPPCGQGLNKPAEVTILNTKCVDKQTVHRYTEGPKVAK 257
           LDLE +VQF NREV VY+DESKKPP GQGLNKPA VT+LN KC+DK+T  +  EG ++ K
Sbjct: 912 LDLEMVVQFKNREVNVYMDESKKPPVGQGLNKPAVVTLLNIKCMDKKTGTQVMEGERLDK 955

Query: 258 YK 260
           YK
Sbjct: 972 YK 955

[Close]
BLAST of CsGy4G008980 vs. Swiss-Prot
Match: sp|Q8LLD0|NUP96_ARATH (Nuclear pore complex protein NUP96 OS=Arabidopsis thaliana OX=3702 GN=NUP96 PE=1 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 2.9e-25
Identity = 56/107 (52.34%), Postives = 71/107 (66.36%), Query Frame = 0 

Query: 130 AIVYEHGTDIEALMPKLLHSDYYTKPKIQELAAKERAEPGFCRHVKDFVVGRHGYGSIKF 189
           A + EH  +I   +P L   DY+ KP I EL  +E   P +C  V DF +GR GYG I+F
Sbjct: 33  AALCEHSKEIIDSLPMLNSPDYFLKPCINELVEREIESPDYCSRVPDFTIGRIGYGYIRF 92

Query: 190 FGETDVRKLDLESIVQFNNREVIVYLDESKKPPCGQGLNKPAEVTIL 237
            G TDVR+LDL+ IV+F+  EVIVY DES KP  G+GLNK AEVT++
Sbjct: 93  LGNTDVRRLDLDHIVKFHRHEVIVYDDESSKPVVGEGLNKAAEVTLV 139

[Close]
BLAST of CsGy4G008980 vs. Swiss-Prot
Match: sp|P52948|NUP98_HUMAN (Nuclear pore complex protein Nup98-Nup96 OS=Homo sapiens OX=9606 GN=NUP98 PE=1 SV=4)

HSP 1 Score: 88.2 bits (217), Expect = 1.5e-16
Identity = 45/93 (48.39%), Postives = 61/93 (65.59%), Query Frame = 0 

Query: 151 YYTKPKIQELAAKERAEPGFCRHVKDFVVGRHGYGSIKFFGETDVRKLDLESIVQFNNRE 210
           YYT P + +L AK   E G C  V DF +GR GYGSI F G+ ++  L+L+ IV    +E
Sbjct: 741 YYTIPSMDDL-AKITNEKGEC-IVSDFTIGRKGYGSIYFEGDVNLTNLNLDDIVHIRRKE 800

Query: 211 VIVYLDESKKPPCGQGLNKPAEVTILNTKCVDK 244
           V+VYLD+++KPP G+GLN+ AEVT+      DK
Sbjct: 801 VVVYLDDNQKPPVGEGLNRKAEVTLDGVWPTDK 831

[Close]
BLAST of CsGy4G008980 vs. Swiss-Prot
Match: sp|P49793|NUP98_RAT (Nuclear pore complex protein Nup98-Nup96 OS=Rattus norvegicus OX=10116 GN=Nup98 PE=1 SV=2)

HSP 1 Score: 87.4 bits (215), Expect = 2.5e-16
Identity = 45/93 (48.39%), Postives = 61/93 (65.59%), Query Frame = 0 

Query: 151 YYTKPKIQELAAKERAEPGFCRHVKDFVVGRHGYGSIKFFGETDVRKLDLESIVQFNNRE 210
           YYT P + +L AK   E G C  V DF +GR GYGSI F G+ ++  L+L+ IV    +E
Sbjct: 741 YYTIPSMDDL-AKITNEKGEC-IVSDFTIGRKGYGSIYFEGDVNLTNLNLDDIVHIRRKE 800

Query: 211 VIVYLDESKKPPCGQGLNKPAEVTILNTKCVDK 244
           VIVY+D+++KPP G+GLN+ AEVT+      DK
Sbjct: 801 VIVYVDDNQKPPVGEGLNRKAEVTLDGVWPTDK 831

[Close]
BLAST of CsGy4G008980 vs. TrEMBL
Match: tr|A0A0A0KZ96|A0A0A0KZ96_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G107440 PE=4 SV=1)

HSP 1 Score: 483.0 bits (1242), Expect = 4.1e-133
Identity = 237/242 (97.93%), Postives = 238/242 (98.35%), Query Frame = 0 

Query: 18  SDDEETPSTPKADALFIPRENPRALVIRPTDQWPSKANLDKSLPSKGTSVRENGKVAERT 77
           SDDEETPSTPKADALFIPRENPRALVIRPTDQWPSKANLDKSLPSKGTSVRENGKVAERT
Sbjct: 31  SDDEETPSTPKADALFIPRENPRALVIRPTDQWPSKANLDKSLPSKGTSVRENGKVAERT 90

Query: 78  SSAINNLKDTNGNVVDNGISKENIHLNKVNQKPNGVHEDFYRTFVGHRAGEAAIVYEHGT 137
           SSAINNLKDTNGNVVDNGISKENIHLNKV+QKPNGVHEDFYRTFVGHRAGEAAIVYEHGT
Sbjct: 91  SSAINNLKDTNGNVVDNGISKENIHLNKVSQKPNGVHEDFYRTFVGHRAGEAAIVYEHGT 150

Query: 138 DIEALMPKLLHSDYYTKPKIQELAAKERAEPGFCRHVKDFVVGRHGYGSIKFFGETDVRK 197
           DIEALMPKLLHSDYYT PKIQELAAKERAEPG CRHVKDFVVGRHGYGSIKFFGETDVRK
Sbjct: 151 DIEALMPKLLHSDYYTMPKIQELAAKERAEPGLCRHVKDFVVGRHGYGSIKFFGETDVRK 210

Query: 198 LDLESIVQFNNREVIVYLDESKKPPCGQGLNKPAEVTILNTKCVDKQTVHRYTEGPKVAK 257
           LDLESIVQFNNREVIVYLDESK PPCGQ LNKPAEVTILNTKCVDKQTVHRYTEGPKVAK
Sbjct: 211 LDLESIVQFNNREVIVYLDESKNPPCGQALNKPAEVTILNTKCVDKQTVHRYTEGPKVAK 270

Query: 258 YK 260
           YK
Sbjct: 271 YK 272

[Close]
BLAST of CsGy4G008980 vs. TrEMBL
Match: tr|A0A1S4E3X5|A0A1S4E3X5_CUCME (nuclear pore complex protein NUP98A-like OS=Cucumis melo OX=3656 GN=LOC103501063 PE=4 SV=1)

HSP 1 Score: 459.5 bits (1181), Expect = 4.9e-126
Identity = 226/249 (90.76%), Postives = 234/249 (93.98%), Query Frame = 0 

Query: 18  SDDEETPSTPKADALFIPRENPRALVIRPTDQWPSKANLDKSLPSKGTSVRENGKVAERT 77
           SDDEETPSTPKADALFIPRENPRALVIRPTDQWPSKANLDKSLPSK TSVRENGK+AERT
Sbjct: 751 SDDEETPSTPKADALFIPRENPRALVIRPTDQWPSKANLDKSLPSKDTSVRENGKIAERT 810

Query: 78  SSAINNLKDTNGNVVDNGISKENIHLNKVNQKPNGVHED-------FYRTFVGHRAGEAA 137
           SSA+NNLKDTNGNVV+NGI+KE+IHLNKVNQKPNGVHED        YRTF GHRAGEAA
Sbjct: 811 SSAVNNLKDTNGNVVENGINKESIHLNKVNQKPNGVHEDHSAPKEELYRTFAGHRAGEAA 870

Query: 138 IVYEHGTDIEALMPKLLHSDYYTKPKIQELAAKERAEPGFCRHVKDFVVGRHGYGSIKFF 197
           IVYEHG DIEALMPKL HSDYYT+PKIQELAAKERAEPGFCRHVKDFVVGRHGYGSIKFF
Sbjct: 871 IVYEHGADIEALMPKLRHSDYYTEPKIQELAAKERAEPGFCRHVKDFVVGRHGYGSIKFF 930

Query: 198 GETDVRKLDLESIVQFNNREVIVYLDESKKPPCGQGLNKPAEVTILNTKCVDKQTVHRYT 257
           GETDVR+LDLESIVQFNNREVIVYLDESKKPPCGQGLNKPAEVTILN KCVDKQT H+YT
Sbjct: 931 GETDVRRLDLESIVQFNNREVIVYLDESKKPPCGQGLNKPAEVTILNIKCVDKQTGHQYT 990

Query: 258 EGPKVAKYK 260
           EGPKV KYK
Sbjct: 991 EGPKVEKYK 999

[Close]
BLAST of CsGy4G008980 vs. TrEMBL
Match: tr|A0A0A0LN95|A0A0A0LN95_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G433410 PE=4 SV=1)

HSP 1 Score: 458.0 bits (1177), Expect = 1.4e-125
Identity = 226/249 (90.76%), Postives = 232/249 (93.17%), Query Frame = 0 

Query: 18  SDDEETPSTPKADALFIPRENPRALVIRPTDQWPSKANLDKSLPSKGTSVRENGKVAERT 77
           SDDEETPSTPKADALFIPRENPRALVIRPTDQWPSK NLDKSLPSK TSVRENGKVAERT
Sbjct: 743 SDDEETPSTPKADALFIPRENPRALVIRPTDQWPSKGNLDKSLPSKDTSVRENGKVAERT 802

Query: 78  SSAINNLKDTNGNVVDNGISKENIHLNKVNQKPNGVH-------EDFYRTFVGHRAGEAA 137
           SSA+NNLKDTNGNVV+NG SKENIHLN+VNQKPNGVH       ED YRTF GHRAGEAA
Sbjct: 803 SSAVNNLKDTNGNVVENGTSKENIHLNEVNQKPNGVHEDHSAPKEDLYRTFAGHRAGEAA 862

Query: 138 IVYEHGTDIEALMPKLLHSDYYTKPKIQELAAKERAEPGFCRHVKDFVVGRHGYGSIKFF 197
           IVYEHG DIEALMPKL HSDYYT+PKIQELAAKERAEPGFCRHVKDFVVGRHGYGSIKFF
Sbjct: 863 IVYEHGADIEALMPKLRHSDYYTEPKIQELAAKERAEPGFCRHVKDFVVGRHGYGSIKFF 922

Query: 198 GETDVRKLDLESIVQFNNREVIVYLDESKKPPCGQGLNKPAEVTILNTKCVDKQTVHRYT 257
           GETDVR+LDLESIVQFNNREVIVYLDESKKPPCGQGLNKPAEVTILN KCVDKQT H+YT
Sbjct: 923 GETDVRRLDLESIVQFNNREVIVYLDESKKPPCGQGLNKPAEVTILNIKCVDKQTGHQYT 982

Query: 258 EGPKVAKYK 260
           EGPKV KYK
Sbjct: 983 EGPKVEKYK 991

[Close]
BLAST of CsGy4G008980 vs. TrEMBL
Match: tr|A0A0V0IXD7|A0A0V0IXD7_SOLCH (Putative nuclear pore complex protein Nup98-Nup96-like OS=Solanum chacoense OX=4108 PE=4 SV=1)

HSP 1 Score: 361.7 bits (927), Expect = 1.4e-96
Identity = 180/253 (71.15%), Postives = 205/253 (81.03%), Query Frame = 0 

Query: 18  SDDEETPSTPKADALFIPRENPRALVIRPTDQWPSKANLDKSLPSKGTS--VRENGKVAE 77
           SDD+ETPSTPKADALF+PRENPRALVIRP DQWPS+  L+K  PSK  S    ENGK AE
Sbjct: 692 SDDDETPSTPKADALFVPRENPRALVIRPLDQWPSRGGLEKVSPSKHMSSPAHENGKTAE 751

Query: 78  RTSSAIN--NLKDTNGNVVDNGISKENIHLNKVNQKPNGVHEDFYR-------TFVGHRA 137
              + +N  + KD N ++V+NG  KE +   K+NQKPNG+HE  +        T  GHRA
Sbjct: 752 VVCAPVNEXSAKDKNKDLVENGFDKEGLDSTKLNQKPNGLHEGQHLRKGGSSITLTGHRA 811

Query: 138 GEAAIVYEHGTDIEALMPKLLHSDYYTKPKIQELAAKERAEPGFCRHVKDFVVGRHGYGS 197
           GEAAIVYEHG DIEALMPKLLHSDYYT+P+IQELAAKERAEPGFCR VKDFVVGRHGYGS
Sbjct: 812 GEAAIVYEHGADIEALMPKLLHSDYYTEPRIQELAAKERAEPGFCRRVKDFVVGRHGYGS 871

Query: 198 IKFFGETDVRKLDLESIVQFNNREVIVYLDESKKPPCGQGLNKPAEVTILNTKCVDKQTV 257
           IKF GETDVR+LDLES++QFNNREVIVY+DESKKPP GQGLNKPAEVT+LN KC DK+T 
Sbjct: 872 IKFMGETDVRRLDLESLIQFNNREVIVYMDESKKPPVGQGLNKPAEVTLLNIKCFDKKTG 931

Query: 258 HRYTEGPKVAKYK 260
            +YTEGP++ KYK
Sbjct: 932 QQYTEGPRIEKYK 944

[Close]
BLAST of CsGy4G008980 vs. TrEMBL
Match: tr|K4BNN5|K4BNN5_SOLLC (Uncharacterized protein OS=Solanum lycopersicum OX=4081 GN=101245750 PE=4 SV=1)

HSP 1 Score: 359.4 bits (921), Expect = 6.9e-96
Identity = 178/254 (70.08%), Postives = 205/254 (80.71%), Query Frame = 0 

Query: 18  SDDEETPSTPKADALFIPRENPRALVIRPTDQWPSKANLDKSLPSKGTSV--RENGKVAE 77
           SDD+ETPSTPKADALF+PRENPRALVIRP DQWPS+  ++K  PSK  S+   ENGK AE
Sbjct: 691 SDDDETPSTPKADALFVPRENPRALVIRPVDQWPSRGGVEKVSPSKHMSIPAHENGKTAE 750

Query: 78  RTSSAIN--NLKDTNGNVVDNGISKENIHLNKVNQKPNGVHEDFYR--------TFVGHR 137
              + +N  + KD N + V+NG+ KE +   K+NQKPNG+HE  +         T  GHR
Sbjct: 751 VVCAPVNEASAKDKNKDPVENGLDKEGLDSTKLNQKPNGLHEGQHLRKGGGSSITLTGHR 810

Query: 138 AGEAAIVYEHGTDIEALMPKLLHSDYYTKPKIQELAAKERAEPGFCRHVKDFVVGRHGYG 197
           AGEAAIVYEHG DIEALMPKL HSDYYT+P+IQELAAKERAEPGFCR VKDFVVGRHGYG
Sbjct: 811 AGEAAIVYEHGADIEALMPKLCHSDYYTEPRIQELAAKERAEPGFCRRVKDFVVGRHGYG 870

Query: 198 SIKFFGETDVRKLDLESIVQFNNREVIVYLDESKKPPCGQGLNKPAEVTILNTKCVDKQT 257
           SIKF GETDVR+LDLES++QFNNREVIVY+DESKKPP GQGLNKPAEVT+LN KC DK+T
Sbjct: 871 SIKFIGETDVRRLDLESLIQFNNREVIVYMDESKKPPVGQGLNKPAEVTLLNIKCFDKKT 930

Query: 258 VHRYTEGPKVAKYK 260
             +YTEGP++ KYK
Sbjct: 931 GQQYTEGPRIEKYK 944

The following BLAST results are available for this feature:
BLAST of CsGy4G008980 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_011653376.16.2e-13397.93PREDICTED: nuclear pore complex protein NUP98A-like [Cucumis sativus] >KGN53702.... [more]
XP_008462776.17.4e-12690.76PREDICTED: nuclear pore complex protein NUP98A-like [Cucumis melo] >XP_016902936... [more]
XP_011650063.12.1e-12590.76PREDICTED: nuclear pore complex protein NUP98A-like [Cucumis sativus] >KGN63375.... [more]
XP_022943868.12.2e-11785.60nuclear pore complex protein NUP98A-like isoform X2 [Cucurbita moschata][more]
XP_022943867.12.2e-11785.60nuclear pore complex protein NUP98A-like isoform X1 [Cucurbita moschata][more]
BLAST of CsGy4G008980 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G10390.16.5e-8463.53Nucleoporin autopeptidase[more]
AT1G59660.11.0e-6556.61Nucleoporin autopeptidase[more]
AT1G80680.11.6e-2652.34SUPPRESSOR OF AUXIN RESISTANCE 3[more]
BLAST of CsGy4G008980 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q8RY25|NU98A_ARATH1.2e-8263.53Nuclear pore complex protein NUP98A OS=Arabidopsis thaliana OX=3702 GN=NUP98A PE... [more]
sp|F4ID16|NU98B_ARATH1.9e-6456.61Nuclear pore complex protein NUP98B OS=Arabidopsis thaliana OX=3702 GN=NUP98B PE... [more]
sp|Q8LLD0|NUP96_ARATH2.9e-2552.34Nuclear pore complex protein NUP96 OS=Arabidopsis thaliana OX=3702 GN=NUP96 PE=1... [more]
sp|P52948|NUP98_HUMAN1.5e-1648.39Nuclear pore complex protein Nup98-Nup96 OS=Homo sapiens OX=9606 GN=NUP98 PE=1 S... [more]
sp|P49793|NUP98_RAT2.5e-1648.39Nuclear pore complex protein Nup98-Nup96 OS=Rattus norvegicus OX=10116 GN=Nup98 ... [more]
BLAST of CsGy4G008980 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KZ96|A0A0A0KZ96_CUCSA4.1e-13397.93Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G107440 PE=4 SV=1[more]
tr|A0A1S4E3X5|A0A1S4E3X5_CUCME4.9e-12690.76nuclear pore complex protein NUP98A-like OS=Cucumis melo OX=3656 GN=LOC103501063... [more]
tr|A0A0A0LN95|A0A0A0LN95_CUCSA1.4e-12590.76Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G433410 PE=4 SV=1[more]
tr|A0A0V0IXD7|A0A0V0IXD7_SOLCH1.4e-9671.15Putative nuclear pore complex protein Nup98-Nup96-like OS=Solanum chacoense OX=4... [more]
tr|K4BNN5|K4BNN5_SOLLC6.9e-9670.08Uncharacterized protein OS=Solanum lycopersicum OX=4081 GN=101245750 PE=4 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006913nucleocytoplasmic transport
Vocabulary: Cellular Component
TermDefinition
GO:0005643nuclear pore
Vocabulary: Molecular Function
TermDefinition
GO:0017056structural constituent of nuclear pore
Vocabulary: INTERPRO
TermDefinition
IPR037665Nucleoporin_S59-like
IPR037637NUP98-NUP96
IPR036903Peptidase_S59_sf
IPR007230Peptidase_S59
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006913 nucleocytoplasmic transport
cellular_component GO:0005643 nuclear pore
molecular_function GO:0017056 structural constituent of nuclear pore
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy4G008980.1CsGy4G008980.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007230Peptidase S59, nucleoporinPFAMPF04096Nucleoporin2coord: 150..257
e-value: 2.7E-31
score: 108.5
IPR007230Peptidase S59, nucleoporinPROSITEPS51434NUP_Ccoord: 148..259
score: 36.082
IPR036903Peptidase S59, nucleoporin superfamilyGENE3DG3DSA:3.30.1610.10coord: 138..259
e-value: 9.8E-35
score: 121.5
IPR036903Peptidase S59, nucleoporin superfamilySUPERFAMILYSSF82215C-terminal autoproteolytic domain of nucleoporin nup98coord: 141..250
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 52..78
IPR037637Nuclear pore complex protein NUP98-NUP96PANTHERPTHR23198:SF6NUCLEAR PORE COMPLEX PROTEIN NUP98-NUP96coord: 16..259
IPR037665Nucleoporin peptidase S59-likePANTHERPTHR23198NUCLEOPORINcoord: 16..259

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsGy4G008980Csa4G107440Cucumber (Chinese Long) v2cgybcuB165
CsGy4G008980CsaV3_4G009380Cucumber (Chinese Long) v3cgybcucB171
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsGy4G008980Wax gourdcgybwgoB344
CsGy4G008980Cucurbita maxima (Rimu)cgybcmaB495
CsGy4G008980Cucurbita maxima (Rimu)cgybcmaB545
CsGy4G008980Cucurbita moschata (Rifu)cgybcmoB468
CsGy4G008980Cucurbita moschata (Rifu)cgybcmoB518
CsGy4G008980Cucurbita pepo (Zucchini)cgybcpeB488
CsGy4G008980Cucurbita pepo (Zucchini)cgybcpeB505
CsGy4G008980Bottle gourd (USVL1VR-Ls)cgyblsiB259
CsGy4G008980Melon (DHL92) v3.5.1cgybmeB274
CsGy4G008980Melon (DHL92) v3.6.1cgybmedB272
CsGy4G008980Watermelon (Charleston Gray)cgybwcgB253
CsGy4G008980Watermelon (97103) v1cgybwmB272
CsGy4G008980Watermelon (97103) v1cgybwmB274
CsGy4G008980Wild cucumber (PI 183967)cgybcpiB168
CsGy4G008980Silver-seed gourdcarcgybB0384
CsGy4G008980Silver-seed gourdcarcgybB0861
CsGy4G008980Watermelon (97103) v2cgybwmbB261