CsGy4G008940 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy4G008940
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1
Location	Chr4 : 7101450 .. 7102020 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTAGGTTTCTTGTTGAGATGTAGGTTGTGGGTGATAGGAATATTGGCACAGAAAAACACTGGCATAACTTTTACATGATAGATTGTTTGCAAACGATTGTAGGATTTGGGAATTTGAAGATGTTTCTCTGGTGCCGAAACATTCTACATTACTGAGGGAAAAAAACCCCATCTCTAGCAGGCAGGGTTTAGCATTTCAGTGCCCTAAATCTAAGACGGAGCTCCGTTCGTTCATTGTGGTTGATTGCACATAATTTCTCTCCCAGCTCTCAGATTTACTGATGGCTTCCTTTGCCACCAGGGCCATTTTCCGATCCTCCTCCGGCAAGGCTGCCACTCTTCTGATCATCGGAATCAGGGCAGCTCTGGCTGGTTCACCATTTTGCATTGCTTCGAAACAACCTTTCCCTCAGTGCTCTTTAAGGATCCTTATTGAAATGAGCTTCTTCGTGGAATCCATGCTTCCATTCCATTCTGTAACTTCTTCCACATTAAGGACTTCGATGCTTTCTGTTTCTCGCCGTAGTTATGGTTGGCTTTCAGAAGTGTCTGGCTTGCAAACTCCATGA

mRNA sequence

ATGCTCTCAGATTTACTGATGGCTTCCTTTGCCACCAGGGCCATTTTCCGATCCTCCTCCGGCAAGGCTGCCACTCTTCTGATCATCGGAATCAGGGCAGCTCTGGCTGGTTCACCATTTTGCATTGCTTCGAAACAACCTTTCCCTCAGTGCTCTTTAAGGATCCTTATTGAAATGAGCTTCTTCGTGGAATCCATGCTTCCATTCCATTCTGTAACTTCTTCCACATTAAGGACTTCGATGCTTTCTGTTTCTCGCCGTAGTTATGGTTGGCTTTCAGAAGTGTCTGGCTTGCAAACTCCATGA

Coding sequence (CDS)

ATGCTCTCAGATTTACTGATGGCTTCCTTTGCCACCAGGGCCATTTTCCGATCCTCCTCCGGCAAGGCTGCCACTCTTCTGATCATCGGAATCAGGGCAGCTCTGGCTGGTTCACCATTTTGCATTGCTTCGAAACAACCTTTCCCTCAGTGCTCTTTAAGGATCCTTATTGAAATGAGCTTCTTCGTGGAATCCATGCTTCCATTCCATTCTGTAACTTCTTCCACATTAAGGACTTCGATGCTTTCTGTTTCTCGCCGTAGTTATGGTTGGCTTTCAGAAGTGTCTGGCTTGCAAACTCCATGA

Protein sequence

MLSDLLMASFATRAIFRSSSGKAATLLIIGIRAALAGSPFCIASKQPFPQCSLRILIEMSFFVESMLPFHSVTSSTLRTSMLSVSRRSYGWLSEVSGLQTP

Homology

[Close]

BLAST of CsGy4G008940 vs. NCBI nr
Match: KGN53698.1 (hypothetical protein Csa_4G107400 [Cucumis sativus])

HSP 1 Score: 180.3 bits (456), Expect = 3.4e-42
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 0


Query: 7   MASFATRAIFRSSSGKAATLLIIGIRAALAGSPFCIASKQPFPQCSLRILIEMSFFVESM 66
           MASFATRAIFRSSSGKAATLLIIGIRAALAGSPFCIASKQPFPQCSLRILIEMSFFVESM
Sbjct: 1   MASFATRAIFRSSSGKAATLLIIGIRAALAGSPFCIASKQPFPQCSLRILIEMSFFVESM 60

Query: 67  LPFHSVTSSTLRTSMLSVSRRSYGWLSEVSGLQTP 102
           LPFHSVTSSTLRTSMLSVSRRSYGWLSEVSGLQTP
Sbjct: 61  LPFHSVTSSTLRTSMLSVSRRSYGWLSEVSGLQTP 95

[Close]

BLAST of CsGy4G008940 vs. NCBI nr
Match: XP_023554650.1 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 130.2 bits (326), Expect = 4.0e-27
Identity = 71/94 (75.53%), Postives = 78/94 (82.98%), Query Frame = 0


Query: 7   MASFATRAIFRSSSGKAATLLIIGIRAALAGSPFCIASKQPFPQCSLRILIEMSFFVESM 66
           MASFA RAI RSS GKAATLL +G RAA A SPF IASK+P  QC++R+ +EMSF VESM
Sbjct: 1   MASFAARAISRSSFGKAATLLSVGARAAPARSPFRIASKRPISQCAVRLPVEMSFCVESM 60

Query: 67  LPFHSVTSSTLRTSMLSVSRRSYGWLSEVSGLQT 101
           LPFHS TSS L TSMLSVSR SYGWLSEV+GLQT
Sbjct: 61  LPFHSATSSALMTSMLSVSRHSYGWLSEVTGLQT 94

[Close]

BLAST of CsGy4G008940 vs. NCBI nr
Match: XP_008459321.1 (PREDICTED: protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 [Cucumis melo])

HSP 1 Score: 129.4 bits (324), Expect = 6.8e-27
Identity = 74/94 (78.72%), Postives = 75/94 (79.79%), Query Frame = 0


Query: 7   MASFATRAIFRSSSGKAATLLIIGIRAALAGSPFCIASKQPFPQCSLRILIEMSFFVESM 66
           MASFA RAIFRSSSGK ATLL  G RAA A SPF IASK+PF   S RI IEMSF VESM
Sbjct: 1   MASFAARAIFRSSSGKTATLLSAGARAAPARSPFRIASKRPFSHSSFRIPIEMSFCVESM 60

Query: 67  LPFHSVTSSTLRTSMLSVSRRSYGWLSEVSGLQT 101
           LPFHS TSS L TSMLSVS  SYGWLSEVSGLQT
Sbjct: 61  LPFHSATSSALMTSMLSVSPHSYGWLSEVSGLQT 94

[Close]

BLAST of CsGy4G008940 vs. NCBI nr
Match: XP_004148697.1 (PREDICTED: protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 [Cucumis sativus])

HSP 1 Score: 128.6 bits (322), Expect = 1.2e-26
Identity = 71/94 (75.53%), Postives = 76/94 (80.85%), Query Frame = 0


Query: 7   MASFATRAIFRSSSGKAATLLIIGIRAALAGSPFCIASKQPFPQCSLRILIEMSFFVESM 66
           MASFA R+IFRSSS KAATLL  G RAA A SPF IASK+PF  CS R+ IE+SF VESM
Sbjct: 1   MASFAARSIFRSSSAKAATLLSAGARAAPASSPFRIASKRPFSHCSFRLPIELSFCVESM 60

Query: 67  LPFHSVTSSTLRTSMLSVSRRSYGWLSEVSGLQT 101
           LPFHS TSS L TSMLSVS  S+GWLSEVSGLQT
Sbjct: 61  LPFHSATSSALMTSMLSVSPHSFGWLSEVSGLQT 94

[Close]

BLAST of CsGy4G008940 vs. NCBI nr
Match: XP_022969309.1 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 127.9 bits (320), Expect = 2.0e-26
Identity = 70/94 (74.47%), Postives = 78/94 (82.98%), Query Frame = 0


Query: 7   MASFATRAIFRSSSGKAATLLIIGIRAALAGSPFCIASKQPFPQCSLRILIEMSFFVESM 66
           MASFA RAI RSS G+AATLL +G RAA A S F IASK+PF QC++R+ +EMSF VESM
Sbjct: 1   MASFAARAISRSSFGRAATLLSVGSRAAPARSSFRIASKRPFSQCAVRLPVEMSFCVESM 60

Query: 67  LPFHSVTSSTLRTSMLSVSRRSYGWLSEVSGLQT 101
           LPFHS TSS L TSMLSVSR SYGWLSEV+GLQT
Sbjct: 61  LPFHSATSSALMTSMLSVSRHSYGWLSEVTGLQT 94

[Close]

BLAST of CsGy4G008940 vs. TAIR10
Match: AT2G20585.1 (nuclear fusion defective 6)

HSP 1 Score: 53.1 bits (126), Expect = 1.1e-07
Identity = 34/84 (40.48%), Postives = 53/84 (63.10%), Query Frame = 0


Query: 13 RAIFRSSSGKAATLLIIGIRA-ALAGSPFCIASKQPFPQCS-LRILIEMSFFVESMLPFH 72
          R++ R++S ++A        + A +  P   A+ +  P  S LR  +E+SF VES+LP+H
Sbjct: 11 RSMLRAASSRSAAASTGRFASQAKSAPPLFRATARRSPLLSPLRNPVELSFCVESLLPYH 70

Query: 73 SVTSSTLRTSMLSVSRRSYGWLSE 95
          S T+S L TS LS+S ++YGWLS+
Sbjct: 71 SATASALMTSKLSISGQTYGWLSD 94

[Close]

BLAST of CsGy4G008940 vs. TAIR10
Match: AT2G33847.1 (unknown protein)

HSP 1 Score: 49.7 bits (117), Expect = 1.2e-06
Identity = 32/80 (40.00%), Postives = 46/80 (57.50%), Query Frame = 0


Query: 11 ATRAIFRSSSGKAATLLIIGIR--AALAGSPFCIASKQPFPQCSLRILIEMSFFVESMLP 70
          A R++FRS  G+AA   +   +   + A S F +  + P      R  +E+S  VE+MLP
Sbjct: 3  AARSVFRSGVGRAAVAALRSTKPMPSSARSSFKLPKQSPLSHRIFRSPVELSCCVETMLP 62

Query: 71 FHSVTSSTLRTSMLSVSRRS 89
          +H+ T+S L  SMLSVS RS
Sbjct: 63 YHTATASALLNSMLSVSGRS 82

[Close]

BLAST of CsGy4G008940 vs. TAIR10
Match: AT1G28395.2 (unknown protein)

HSP 1 Score: 47.0 bits (110), Expect = 8.1e-06
Identity = 35/93 (37.63%), Postives = 54/93 (58.06%), Query Frame = 0


Query: 11 ATRAIFRSSSGKAATLLI---IGIR--AALAGSPFCIASKQPFPQCSLRILIEMSFFVES 70
          A R++FRS++ +A++       G +   + A + F +  + P      R  +E+S  VE+
Sbjct: 3  AARSVFRSAASRASSTAFRFSAGPKPMPSSARTAFRMPKQSPLTNRIFRSPVELSCCVET 62

Query: 71 MLPFHSVTSSTLRTSMLSVSRRSYGWLSEVSGL 99
          MLP+H+ T+S L  SMLSVSRR  GW+  V GL
Sbjct: 63 MLPYHTATASALLNSMLSVSRR--GWI--VDGL 91

[Close]

BLAST of CsGy4G008940 vs. Swiss-Prot
Match: sp|Q93ZJ3|NFD6_ARATH (Protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial OS=Arabidopsis thaliana OX=3702 GN=NFD6 PE=3 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 2.0e-06
Identity = 34/84 (40.48%), Postives = 53/84 (63.10%), Query Frame = 0


Query: 13 RAIFRSSSGKAATLLIIGIRA-ALAGSPFCIASKQPFPQCS-LRILIEMSFFVESMLPFH 72
          R++ R++S ++A        + A +  P   A+ +  P  S LR  +E+SF VES+LP+H
Sbjct: 11 RSMLRAASSRSAAASTGRFASQAKSAPPLFRATARRSPLLSPLRNPVELSFCVESLLPYH 70

Query: 73 SVTSSTLRTSMLSVSRRSYGWLSE 95
          S T+S L TS LS+S ++YGWLS+
Sbjct: 71 SATASALMTSKLSISGQTYGWLSD 94

[Close]

BLAST of CsGy4G008940 vs. TrEMBL
Match: tr|A0A0A0KVU9|A0A0A0KVU9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G107400 PE=4 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 2.2e-42
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 0


Query: 7   MASFATRAIFRSSSGKAATLLIIGIRAALAGSPFCIASKQPFPQCSLRILIEMSFFVESM 66
           MASFATRAIFRSSSGKAATLLIIGIRAALAGSPFCIASKQPFPQCSLRILIEMSFFVESM
Sbjct: 1   MASFATRAIFRSSSGKAATLLIIGIRAALAGSPFCIASKQPFPQCSLRILIEMSFFVESM 60

Query: 67  LPFHSVTSSTLRTSMLSVSRRSYGWLSEVSGLQTP 102
           LPFHSVTSSTLRTSMLSVSRRSYGWLSEVSGLQTP
Sbjct: 61  LPFHSVTSSTLRTSMLSVSRRSYGWLSEVSGLQTP 95

[Close]

BLAST of CsGy4G008940 vs. TrEMBL
Match: tr|A0A1S3CB40|A0A1S3CB40_CUCME (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103498488 PE=4 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 4.5e-27
Identity = 74/94 (78.72%), Postives = 75/94 (79.79%), Query Frame = 0


Query: 7   MASFATRAIFRSSSGKAATLLIIGIRAALAGSPFCIASKQPFPQCSLRILIEMSFFVESM 66
           MASFA RAIFRSSSGK ATLL  G RAA A SPF IASK+PF   S RI IEMSF VESM
Sbjct: 1   MASFAARAIFRSSSGKTATLLSAGARAAPARSPFRIASKRPFSHSSFRIPIEMSFCVESM 60

Query: 67  LPFHSVTSSTLRTSMLSVSRRSYGWLSEVSGLQT 101
           LPFHS TSS L TSMLSVS  SYGWLSEVSGLQT
Sbjct: 61  LPFHSATSSALMTSMLSVSPHSYGWLSEVSGLQT 94

[Close]

BLAST of CsGy4G008940 vs. TrEMBL
Match: tr|A0A1S3C9E2|A0A1S3C9E2_CUCME (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103498488 PE=4 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 2.7e-24
Identity = 69/89 (77.53%), Postives = 70/89 (78.65%), Query Frame = 0


Query: 7  MASFATRAIFRSSSGKAATLLIIGIRAALAGSPFCIASKQPFPQCSLRILIEMSFFVESM 66
          MASFA RAIFRSSSGK ATLL  G RAA A SPF IASK+PF   S RI IEMSF VESM
Sbjct: 1  MASFAARAIFRSSSGKTATLLSAGARAAPARSPFRIASKRPFSHSSFRIPIEMSFCVESM 60

Query: 67 LPFHSVTSSTLRTSMLSVSRRSYGWLSEV 96
          LPFHS TSS L TSMLSVS  SYGWLSEV
Sbjct: 61 LPFHSATSSALMTSMLSVSPHSYGWLSEV 89

[Close]

BLAST of CsGy4G008940 vs. TrEMBL
Match: tr|A0A0A0KVK4|A0A0A0KVK4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G636540 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 4.7e-24
Identity = 66/89 (74.16%), Postives = 71/89 (79.78%), Query Frame = 0


Query: 7  MASFATRAIFRSSSGKAATLLIIGIRAALAGSPFCIASKQPFPQCSLRILIEMSFFVESM 66
          MASFA R+IFRSSS KAATLL  G RAA A SPF IASK+PF  CS R+ IE+SF VESM
Sbjct: 1  MASFAARSIFRSSSAKAATLLSAGARAAPASSPFRIASKRPFSHCSFRLPIELSFCVESM 60

Query: 67 LPFHSVTSSTLRTSMLSVSRRSYGWLSEV 96
          LPFHS TSS L TSMLSVS  S+GWLSEV
Sbjct: 61 LPFHSATSSALMTSMLSVSPHSFGWLSEV 89

[Close]

BLAST of CsGy4G008940 vs. TrEMBL
Match: tr|A0A151SF11|A0A151SF11_CAJCA (Uncharacterized protein OS=Cajanus cajan OX=3821 GN=KK1_024737 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 1.2e-14
Identity = 50/87 (57.47%), Postives = 60/87 (68.97%), Query Frame = 0


Query: 8  ASFATRAIFRSSSGKAATLLIIGIRAALAGSPFCIASKQPFPQCSLRILIEMSFFVESML 67
          A  A R+IFRS S + A    +G  A  A SPF +AS +P  Q SLR  +E+SF VESML
Sbjct: 5  AGAAARSIFRSCSSRRAAFR-LGAEAKAARSPFRVASNKPLSQSSLRCPVELSFCVESML 64

Query: 68 PFHSVTSSTLRTSMLSVSRRSYGWLSE 95
          P+H+ T+S L TSMLSVSRRSYGWL E
Sbjct: 65 PYHTATASALMTSMLSVSRRSYGWLPE 90

The following BLAST results are available for this feature:

BLAST of CsGy4G008940 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN53698.1	3.4e-42	100.00	hypothetical protein Csa_4G107400 [Cucumis sativus]	[more]
XP_023554650.1	4.0e-27	75.53	protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 ...	[more]
XP_008459321.1	6.8e-27	78.72	PREDICTED: protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like ...	[more]
XP_004148697.1	1.2e-26	75.53	PREDICTED: protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like ...	[more]
XP_022969309.1	2.0e-26	74.47	protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 ...	[more]

BLAST of CsGy4G008940 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G20585.1	1.1e-07	40.48	nuclear fusion defective 6	[more]
AT2G33847.1	1.2e-06	40.00	unknown protein	[more]
AT1G28395.2	8.1e-06	37.63	unknown protein	[more]

BLAST of CsGy4G008940 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q93ZJ3\|NFD6_ARATH	2.0e-06	40.48	Protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial OS=Arabidopsis t...	[more]

BLAST of CsGy4G008940 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KVU9\|A0A0A0KVU9_CUCSA	2.2e-42	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G107400 PE=4 SV=1	[more]
tr\|A0A1S3CB40\|A0A1S3CB40_CUCME	4.5e-27	78.72	protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 ...	[more]
tr\|A0A1S3C9E2\|A0A1S3C9E2_CUCME	2.7e-24	77.53	protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X2 ...	[more]
tr\|A0A0A0KVK4\|A0A0A0KVK4_CUCSA	4.7e-24	74.16	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G636540 PE=4 SV=1	[more]
tr\|A0A151SF11\|A0A151SF11_CAJCA	1.2e-14	57.47	Uncharacterized protein OS=Cajanus cajan OX=3821 GN=KK1_024737 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy4G008940.1	CsGy4G008940.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33156:SF2	SUBFAMILY NOT NAMED	coord: 5..95
None	No IPR available	PANTHER	PTHR33156	FAMILY NOT NAMED	coord: 5..95

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy4G008940	Csa4G107400	Cucumber (Chinese Long) v2	cgybcuB165
CsGy4G008940	MELO3C032511.2	Melon (DHL92) v3.6.1	cgybmedB272

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy4G008940	Silver-seed gourd	carcgybB0861
CsGy4G008940	Cucumber (Chinese Long) v3	cgybcucB171
CsGy4G008940	Watermelon (97103) v2	cgybwmbB261
CsGy4G008940	Wax gourd	cgybwgoB344
CsGy4G008940	Cucurbita maxima (Rimu)	cgybcmaB495
CsGy4G008940	Cucurbita maxima (Rimu)	cgybcmaB545
CsGy4G008940	Cucurbita moschata (Rifu)	cgybcmoB468
CsGy4G008940	Cucurbita moschata (Rifu)	cgybcmoB518
CsGy4G008940	Cucurbita pepo (Zucchini)	cgybcpeB488
CsGy4G008940	Cucurbita pepo (Zucchini)	cgybcpeB505
CsGy4G008940	Bottle gourd (USVL1VR-Ls)	cgyblsiB259
CsGy4G008940	Melon (DHL92) v3.5.1	cgybmeB274
CsGy4G008940	Melon (DHL92) v3.6.1	cgybmedB257
CsGy4G008940	Watermelon (Charleston Gray)	cgybwcgB253
CsGy4G008940	Watermelon (97103) v1	cgybwmB272
CsGy4G008940	Watermelon (97103) v1	cgybwmB274
CsGy4G008940	Wild cucumber (PI 183967)	cgybcpiB168
CsGy4G008940	Silver-seed gourd	carcgybB0384