CsGy4G008790 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy4G008790
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Uncharacterized protein
Location	Chr4 : 6844511 .. 6844735 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAATATGAACACAGAGAAGATGAGGAATGCGAACGCAGAGAAGATGAGGAATGTGAACGACAGAGGAGATGAGATGAGGAATGTGAATGGCATAGAAGATGGGGAATCTAGGGTTGTAGAAGATGAAGAAGTTGGTGGCCGTCGGGGTAGTTTGCCGAATGGATTGTCTATGTTGTTTAATGCCCATCTTGGCTATCATGCCGATAATCCAAACCTGTAG

mRNA sequence

ATGGAGAATATGAACACAGAGAAGATGAGGAATGCGAACGCAGAGAAGATGAGGAATGTGAACGACAGAGGAGATGAGATGAGGAATGTGAATGGCATAGAAGATGGGGAATCTAGGGTTGTAGAAGATGAAGAAGTTGGTGGCCGTCGGGGTAGTTTGCCGAATGGATTGTCTATGTTGTTTAATGCCCATCTTGGCTATCATGCCGATAATCCAAACCTGTAG

Coding sequence (CDS)

ATGGAGAATATGAACACAGAGAAGATGAGGAATGCGAACGCAGAGAAGATGAGGAATGTGAACGACAGAGGAGATGAGATGAGGAATGTGAATGGCATAGAAGATGGGGAATCTAGGGTTGTAGAAGATGAAGAAGTTGGTGGCCGTCGGGGTAGTTTGCCGAATGGATTGTCTATGTTGTTTAATGCCCATCTTGGCTATCATGCCGATAATCCAAACCTGTAG

Protein sequence

MENMNTEKMRNANAEKMRNVNDRGDEMRNVNGIEDGESRVVEDEEVGGRRGSLPNGLSMLFNAHLGYHADNPNL

Homology

[Close]

BLAST of CsGy4G008790 vs. NCBI nr
Match: KGN53678.1 (hypothetical protein Csa_4G101780 [Cucumis sativus])

HSP 1 Score: 85.9 bits (211), Expect = 6.3e-14
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 0


Query: 1  MENMNTEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRVVEDEEVGGRRGSLPNGLSML 60
          MENMNTEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRVVEDEEVGGRRGSLPNGLSML
Sbjct: 1  MENMNTEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRVVEDEEVGGRRGSLPNGLSML 60

Query: 61 FNAHLGYHADNPNL 75
          FNAHLGYHADNPNL
Sbjct: 61 FNAHLGYHADNPNL 74

[Close]

BLAST of CsGy4G008790 vs. TrEMBL
Match: tr|A0A0A0KVT0|A0A0A0KVT0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G101780 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 4.2e-14
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 0


Query: 1  MENMNTEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRVVEDEEVGGRRGSLPNGLSML 60
          MENMNTEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRVVEDEEVGGRRGSLPNGLSML
Sbjct: 1  MENMNTEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRVVEDEEVGGRRGSLPNGLSML 60

Query: 61 FNAHLGYHADNPNL 75
          FNAHLGYHADNPNL
Sbjct: 61 FNAHLGYHADNPNL 74

The following BLAST results are available for this feature:

BLAST of CsGy4G008790 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN53678.1	6.3e-14	100.00	hypothetical protein Csa_4G101780 [Cucumis sativus]	[more]

BLAST of CsGy4G008790 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsGy4G008790 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy4G008790 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KVT0\|A0A0A0KVT0_CUCSA	4.2e-14	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G101780 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy4G008790.1	CsGy4G008790.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 9..49
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..55

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy4G008790	Csa4G101780	Cucumber (Chinese Long) v2	cgybcuB165
CsGy4G008790	CSPI04G08970	Wild cucumber (PI 183967)	cgybcpiB168
CsGy4G008790	CsaV3_4G009170	Cucumber (Chinese Long) v3	cgybcucB171

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy4G008790	Bottle gourd (USVL1VR-Ls)	cgyblsiB283
CsGy4G008790	Melon (DHL92) v3.5.1	cgybmeB259
CsGy4G008790	Melon (DHL92) v3.5.1	cgybmeB274
CsGy4G008790	Melon (DHL92) v3.6.1	cgybmedB257
CsGy4G008790	Melon (DHL92) v3.6.1	cgybmedB272
CsGy4G008790	Watermelon (97103) v1	cgybwmB294
CsGy4G008790	Watermelon (97103) v2	cgybwmbB261
CsGy4G008790	Watermelon (97103) v2	cgybwmbB303