CsGy4G006420 (gene) Cucumber (Gy14) v2

Overview
NameCsGy4G006420
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
Descriptionprotein FAR1-RELATED SEQUENCE 4-like
LocationChr4 : 4636808 .. 4636996 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAGTTGAGGTATTTGTTAGAGGTCTTTTAAATTGCATTAGGCCGGTCATCAGGGTTGACGCTACACATTGCAAGGGGAAGTATAAGGGTATCATGCTCGTAGCGATGTCCATTGACTCTAATAAGCAAGTATATCCGATGACTTTTGGGTTGAGTGATAAGGAAAATGATGAGTCATGGACGTGA

mRNA sequence

ATGGCAGTTGAGGTATTTGTTAGAGGTCTTTTAAATTGCATTAGGCCGGTCATCAGGGTTGACGCTACACATTGCAAGGGGAAGTATAAGGGTATCATGCTCGTAGCGATGTCCATTGACTCTAATAAGCAAGTATATCCGATGACTTTTGGGTTGAGTGATAAGGAAAATGATGAGTCATGGACGTGA

Coding sequence (CDS)

ATGGCAGTTGAGGTATTTGTTAGAGGTCTTTTAAATTGCATTAGGCCGGTCATCAGGGTTGACGCTACACATTGCAAGGGGAAGTATAAGGGTATCATGCTCGTAGCGATGTCCATTGACTCTAATAAGCAAGTATATCCGATGACTTTTGGGTTGAGTGATAAGGAAAATGATGAGTCATGGACGTGA

Protein sequence

MAVEVFVRGLLNCIRPVIRVDATHCKGKYKGIMLVAMSIDSNKQVYPMTFGLSDKENDESWT
Homology
[Close]
BLAST of CsGy4G006420 vs. NCBI nr
Match: XP_022153251.1 (uncharacterized protein LOC111020787 [Momordica charantia])

HSP 1 Score: 84.3 bits (207), Expect = 1.5e-13
Identity = 34/62 (54.84%), Postives = 48/62 (77.42%), Query Frame = 0 

Query: 1   MAVEVFVRGLLNCIRPVIRVDATHCKGKYKGIMLVAMSIDSNKQVYPMTFGLSDKENDES 60
           MA+   +RG  +CIRPV+ +D  H KGKYKG++L+A S+D N Q+YP+ FGL D+E+D+S
Sbjct: 107 MALGCCIRGFSSCIRPVLVIDGAHLKGKYKGVILIASSVDCNNQIYPLAFGLVDQESDQS 166

Query: 61  WT 63
           WT
Sbjct: 167 WT 168

[Close]
BLAST of CsGy4G006420 vs. NCBI nr
Match: XP_022155392.1 (uncharacterized protein LOC111022536 [Momordica charantia])

HSP 1 Score: 84.3 bits (207), Expect = 1.5e-13
Identity = 33/62 (53.23%), Postives = 48/62 (77.42%), Query Frame = 0 

Query: 1   MAVEVFVRGLLNCIRPVIRVDATHCKGKYKGIMLVAMSIDSNKQVYPMTFGLSDKENDES 60
           MA+   +RG  +CIRPV+ +D  H KGKY+G++L+A S+D N Q+YP+ FGL D+E+D+S
Sbjct: 42  MALSCCIRGFSSCIRPVLVIDGVHLKGKYRGVILIASSVDGNNQIYPLAFGLVDQESDQS 101

Query: 61  WT 63
           WT
Sbjct: 102 WT 103

[Close]
BLAST of CsGy4G006420 vs. NCBI nr
Match: XP_022147769.1 (protein FAR-RED ELONGATED HYPOCOTYL 3-like [Momordica charantia])

HSP 1 Score: 82.4 bits (202), Expect = 5.9e-13
Identity = 35/62 (56.45%), Postives = 46/62 (74.19%), Query Frame = 0 

Query: 1   MAVEVFVRGLLNCIRPVIRVDATHCKGKYKGIMLVAMSIDSNKQVYPMTFGLSDKENDES 60
           MA+   +RG  +CIRP++ VD  H KGKYKG++L A SID N Q+YP+ FG+ DKE D+S
Sbjct: 67  MALGCSIRGFGSCIRPILVVDGAHLKGKYKGVLLTASSIDGNNQIYPLAFGVVDKECDDS 126

Query: 61  WT 63
           WT
Sbjct: 127 WT 128

[Close]
BLAST of CsGy4G006420 vs. NCBI nr
Match: XP_022157875.1 (uncharacterized protein LOC111024486 [Momordica charantia])

HSP 1 Score: 82.4 bits (202), Expect = 5.9e-13
Identity = 35/62 (56.45%), Postives = 46/62 (74.19%), Query Frame = 0 

Query: 1   MAVEVFVRGLLNCIRPVIRVDATHCKGKYKGIMLVAMSIDSNKQVYPMTFGLSDKENDES 60
           MA+   +RG  +CIRP++ VD  H KGKYKG++L A SID N Q+YP+ FG+ DKE D+S
Sbjct: 67  MALGCSIRGFGSCIRPILVVDGAHLKGKYKGVLLTASSIDGNNQIYPLAFGVVDKECDDS 126

Query: 61  WT 63
           WT
Sbjct: 127 WT 128

[Close]
BLAST of CsGy4G006420 vs. NCBI nr
Match: XP_022147768.1 (uncharacterized protein LOC111016623 [Momordica charantia])

HSP 1 Score: 81.3 bits (199), Expect = 1.3e-12
Identity = 33/62 (53.23%), Postives = 46/62 (74.19%), Query Frame = 0 

Query: 1   MAVEVFVRGLLNCIRPVIRVDATHCKGKYKGIMLVAMSIDSNKQVYPMTFGLSDKENDES 60
           MA+   +RG  +CIR V+ +D  H KGKYKG++L+A S+D N Q+YP+ FG+ DKE+D S
Sbjct: 103 MALGCSIRGFRSCIRSVLVIDGAHLKGKYKGVILIASSVDGNNQIYPVAFGIVDKESDNS 162

Query: 61  WT 63
           WT
Sbjct: 163 WT 164

[Close]
BLAST of CsGy4G006420 vs. TrEMBL
Match: tr|Q5GIT1|Q5GIT1_CUCME (MuDRA transposase-like OS=Cucumis melo OX=3656 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 8.1e-11
Identity = 33/60 (55.00%), Postives = 44/60 (73.33%), Query Frame = 0 

Query: 1   MAVEVFVRGLLNCIRPVIRVDATHCKGKYKGIMLVAMSIDSNKQVYPMTFGLSDKENDES 60
           MAV   VRG LNCIRPVI +D T  K KY+G ++VA+ +D N Q+YP+ FG+ D+E D+S
Sbjct: 414 MAVGACVRGFLNCIRPVIVMDGTFLKNKYRGQLIVAVCLDGNNQIYPLAFGVVDRETDDS 473

[Close]
BLAST of CsGy4G006420 vs. TrEMBL
Match: tr|A0A2I7YUI4|A0A2I7YUI4_CUCSA (MuDRA-like transposase OS=Cucumis sativus OX=3659 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 3.1e-10
Identity = 33/60 (55.00%), Postives = 43/60 (71.67%), Query Frame = 0 

Query: 1   MAVEVFVRGLLNCIRPVIRVDATHCKGKYKGIMLVAMSIDSNKQVYPMTFGLSDKENDES 60
           MAV   VRG LNCIRPVI +D T  K KY+G ++VA+ +D N Q+YP+ FG+ D+E D S
Sbjct: 413 MAVGPCVRGFLNCIRPVIVMDGTFLKNKYRGQLIVAVCLDGNNQIYPLAFGVVDRETDAS 472

[Close]
BLAST of CsGy4G006420 vs. TrEMBL
Match: tr|A0A061E2L7|A0A061E2L7_THECC (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_005764 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 9.9e-09
Identity = 26/56 (46.43%), Postives = 43/56 (76.79%), Query Frame = 0 

Query: 7   VRGLLNCIRPVIRVDATHCKGKYKGIMLVAMSIDSNKQVYPMTFGLSDKENDESWT 63
           +RG ++ +RP I +DATH KG++KG++ VA+  D+N+ VYP+ FG+   E+++SWT
Sbjct: 323 IRGFMDVMRPTIAIDATHLKGRFKGVLFVAVCKDANECVYPIAFGIDHIEDEDSWT 378

[Close]
BLAST of CsGy4G006420 vs. TrEMBL
Match: tr|A0A061F5R6|A0A061F5R6_THECC (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_030916 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.7e-08
Identity = 26/56 (46.43%), Postives = 42/56 (75.00%), Query Frame = 0 

Query: 7   VRGLLNCIRPVIRVDATHCKGKYKGIMLVAMSIDSNKQVYPMTFGLSDKENDESWT 63
           +RG  + +RP + +DATH KGK+KG++ VA+S D+NK VYP+  G+   ++++SWT
Sbjct: 265 IRGFKDVMRPTVAIDATHLKGKFKGVLFVAVSKDANKCVYPVALGIDHVKDEDSWT 320

[Close]
BLAST of CsGy4G006420 vs. TrEMBL
Match: tr|A0A2N9GH25|A0A2N9GH25_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS29689 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 2.2e-08
Identity = 25/55 (45.45%), Postives = 43/55 (78.18%), Query Frame = 0 

Query: 7   VRGLLNCIRPVIRVDATHCKGKYKGIMLVAMSIDSNKQVYPMTFGLSDKENDESW 62
           ++G +NC RPVI +DATH  GKY+G +++AM+ D+N ++YP+ F + +KE+ ++W
Sbjct: 873 IQGFVNC-RPVISIDATHLNGKYEGKLMIAMATDANNEIYPLAFAVVEKESKDTW 926

The following BLAST results are available for this feature:
BLAST of CsGy4G006420 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022153251.11.5e-1354.84uncharacterized protein LOC111020787 [Momordica charantia][more]
XP_022155392.11.5e-1353.23uncharacterized protein LOC111022536 [Momordica charantia][more]
XP_022147769.15.9e-1356.45protein FAR-RED ELONGATED HYPOCOTYL 3-like [Momordica charantia][more]
XP_022157875.15.9e-1356.45uncharacterized protein LOC111024486 [Momordica charantia][more]
XP_022147768.11.3e-1253.23uncharacterized protein LOC111016623 [Momordica charantia][more]
BLAST of CsGy4G006420 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsGy4G006420 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsGy4G006420 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|Q5GIT1|Q5GIT1_CUCME8.1e-1155.00MuDRA transposase-like OS=Cucumis melo OX=3656 PE=4 SV=1[more]
tr|A0A2I7YUI4|A0A2I7YUI4_CUCSA3.1e-1055.00MuDRA-like transposase OS=Cucumis sativus OX=3659 PE=4 SV=1[more]
tr|A0A061E2L7|A0A061E2L7_THECC9.9e-0946.43Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_005764 PE=4 SV=1[more]
tr|A0A061F5R6|A0A061F5R6_THECC1.7e-0846.43Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_030916 PE=4 SV=1[more]
tr|A0A2N9GH25|A0A2N9GH25_FAGSY2.2e-0845.45Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS29689 PE=4 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR018289MULE_transposase_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy4G006420.1CsGy4G006420.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR018289MULE transposase domainPFAMPF10551MULEcoord: 17..62
e-value: 6.7E-10
score: 39.2
NoneNo IPR availablePANTHERPTHR31973FAMILY NOT NAMEDcoord: 6..62
NoneNo IPR availablePANTHERPTHR31973:SF22SUBFAMILY NOT NAMEDcoord: 6..62

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsGy4G006420Cucumber (Gy14) v2cgybcgybB084
CsGy4G006420Cucumber (Gy14) v2cgybcgybB127
CsGy4G006420Cucurbita maxima (Rimu)cgybcmaB498
CsGy4G006420Cucurbita maxima (Rimu)cgybcmaB547
CsGy4G006420Cucurbita moschata (Rifu)cgybcmoB460
CsGy4G006420Cucurbita moschata (Rifu)cgybcmoB467
CsGy4G006420Cucurbita moschata (Rifu)cgybcmoB521
CsGy4G006420Cucurbita pepo (Zucchini)cgybcpeB487
CsGy4G006420Cucurbita pepo (Zucchini)cgybcpeB508
CsGy4G006420Cucumber (Chinese Long) v2cgybcuB163
CsGy4G006420Cucumber (Chinese Long) v2cgybcuB165
CsGy4G006420Cucumber (Chinese Long) v2cgybcuB182
CsGy4G006420Bottle gourd (USVL1VR-Ls)cgyblsiB231
CsGy4G006420Bottle gourd (USVL1VR-Ls)cgyblsiB274
CsGy4G006420Bottle gourd (USVL1VR-Ls)cgyblsiB278
CsGy4G006420Melon (DHL92) v3.5.1cgybmeB228
CsGy4G006420Melon (DHL92) v3.5.1cgybmeB269
CsGy4G006420Melon (DHL92) v3.6.1cgybmedB229
CsGy4G006420Melon (DHL92) v3.6.1cgybmedB250
CsGy4G006420Melon (DHL92) v3.6.1cgybmedB270
CsGy4G006420Watermelon (Charleston Gray)cgybwcgB267
CsGy4G006420Watermelon (Charleston Gray)cgybwcgB302
CsGy4G006420Watermelon (97103) v1cgybwmB304
CsGy4G006420Watermelon (97103) v1cgybwmB283
CsGy4G006420Watermelon (97103) v1cgybwmB300
CsGy4G006420Wild cucumber (PI 183967)cgybcpiB166
CsGy4G006420Wild cucumber (PI 183967)cgybcpiB168
CsGy4G006420Wild cucumber (PI 183967)cgybcpiB185
CsGy4G006420Silver-seed gourdcarcgybB0044
CsGy4G006420Silver-seed gourdcarcgybB0652
CsGy4G006420Cucumber (Chinese Long) v3cgybcucB170
CsGy4G006420Cucumber (Chinese Long) v3cgybcucB171
CsGy4G006420Cucumber (Chinese Long) v3cgybcucB185
CsGy4G006420Watermelon (97103) v2cgybwmbB256
CsGy4G006420Watermelon (97103) v2cgybwmbB294
CsGy4G006420Watermelon (97103) v2cgybwmbB304
CsGy4G006420Wax gourdcgybwgoB352