CsGy4G003830 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy4G003830
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Uncharacterized protein
Location	Chr4 : 2419345 .. 2420459 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCACTGAAATCAAGCTTGGTGCTCCACACAGCGCTATGGCTTCTAGTAATGCTCTATGCAAACTAATAATGCTCATCTTAGTTACCATCCTCTTTGCCTCCAATAATTTTGCCACAAGGAACTTGCTTTCTATGCCTCATCTCGCTCGTAAGTTACTCTCTTGTATCACATTGAATCTTAATGTTTAAATCTGATGTTTTTTCAGTCAGATTGAAATTATTTTTAGAGTGTACTTAAAAGTCATTTTAAAATATACTACAAGAAATTTGGAAATACATACTATGTATATAGAATCTAAATCAATTCATATATATTGAAAATGAGAACTAAACACTTAAAAGGGTGATAACTACTTTAATTTTTAATTTTCTGTTTTTGAAATAATTTTTCAAACTTTTCTTAATTTTCTAACTGTGCGAAAAATATTTGAATACTTAATTAAATTTCACAATATGGAAAAAAGTACTTGCTACTTAAGATTTTATACAAATTATAATAAGAAAAAAAATAGACTTAATAAAAATTCAAAAGATGAAATGGTTATCAAACAAGATCAATATAATTGAAAAAGGTAACGTAAAGAAATTGTGGTTGATTTTGATCAGATGTAAATCATGATGAGATGACCAATTCTCCACCAACACCACCAAAAGATGGACCATGGGGTGGAAACGTTTGAGGATAACACTGCCTTTCTTTCTTTTCTTTTGTTTTAACTAGACGTTTCCATAACTTGTTATTTCCATACATCTAAAATAAGAAATGAACTTGAGTGTAGTTGGGATGAACAATATTATCTTCTTTCGAAATATGTATTTGTATGGTCAAAAGGTGGAAAGCATAGTGGTTCGATGCAAGTTAGGTTGGTTGTACTTGATCGTGGCTTGTTGAATGAAAATTTAAACTTTCAATCTTGTGGATAAATATGAATATACTTTTAATTGTTGTTAGTTCATGACGTGGTTATTGTTCAAATTTTTTTATAAAAGGTAGTTTGTGTTTCCATATTATTGTTTTGAGAATTGATGTTTCAATATATAATATTTTCATCGCATATGAATGTACTCAAGTTTGAAATTTTATAGATAATATATTTTCAAGAATCTATTTAATAA

mRNA sequence

CCACTGAAATCAAGCTTGGTGCTCCACACAGCGCTATGGCTTCTAGTAATGCTCTATGCAAACTAATAATGCTCATCTTAGTTACCATCCTCTTTGCCTCCAATAATTTTGCCACAAGGAACTTGCTTTCTATGCCTCATCTCGCTCATGTAAATCATGATGAGATGACCAATTCTCCACCAACACCACCAAAAGATGGACCATGGGGTGGAAACGTTTGAGGATAACACTGCCTTTCTTTCTTTTCTTTTGTTTTAACTAGACGTTTCCATAACTTGTTATTTCCATACATCTAAAATAAGAAATGAACTTGAGTGTAGTTGGGATGAACAATATTATCTTCTTTCGAAATATGTATTTGTATGGTCAAAAGGTGGAAAGCATAGTGGTTCGATGCAAGTTAGGTTGGTTGTACTTGATCGTGGCTTGTTGAATGAAAATTTAAACTTTCAATCTTGTGGATAAATATGAATATACTTTTAATTGTTGTTAGTTCATGACGTGGTTATTGTTCAAATTTTTTTATAAAAGGTAGTTTGTGTTTCCATATTATTGTTTTGAGAATTGATGTTTCAATATATAATATTTTCATCGCATATGAATGTACTCAAGTTTGAAATTTTATAGATAATATATTTTCAAGAATCTATTTAATAA

Coding sequence (CDS)

ATGGCTTCTAGTAATGCTCTATGCAAACTAATAATGCTCATCTTAGTTACCATCCTCTTTGCCTCCAATAATTTTGCCACAAGGAACTTGCTTTCTATGCCTCATCTCGCTCATGTAAATCATGATGAGATGACCAATTCTCCACCAACACCACCAAAAGATGGACCATGGGGTGGAAACGTTTGA

Protein sequence

MASSNALCKLIMLILVTILFASNNFATRNLLSMPHLAHVNHDEMTNSPPTPPKDGPWGGNV

Homology

[Close]

BLAST of CsGy4G003830 vs. NCBI nr
Match: KGN53141.1 (hypothetical protein Csa_4G022280 [Cucumis sativus])

HSP 1 Score: 83.2 bits (204), Expect = 3.4e-13
Identity = 44/61 (72.13%), Postives = 50/61 (81.97%), Query Frame = 0


Query: 1  MASSNALCKLIMLILVTILFASNNFATRNLLSMPHLAHVNHDEMTNSPPTPPKDGPWGGN 60
          MAS+N LCKLIMLILVTI+FASNN ATRNLLSMPHLA+V  DE+ N+PP    D PW GN
Sbjct: 1  MASNNVLCKLIMLILVTIIFASNNVATRNLLSMPHLANVKRDEI-NNPPQTADDEPWDGN 60

Query: 61 V 62
          +
Sbjct: 61 I 60

[Close]

BLAST of CsGy4G003830 vs. TrEMBL
Match: tr|A0A0A0KZ52|A0A0A0KZ52_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G022280 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 2.2e-13
Identity = 44/61 (72.13%), Postives = 50/61 (81.97%), Query Frame = 0


Query: 1  MASSNALCKLIMLILVTILFASNNFATRNLLSMPHLAHVNHDEMTNSPPTPPKDGPWGGN 60
          MAS+N LCKLIMLILVTI+FASNN ATRNLLSMPHLA+V  DE+ N+PP    D PW GN
Sbjct: 1  MASNNVLCKLIMLILVTIIFASNNVATRNLLSMPHLANVKRDEI-NNPPQTADDEPWDGN 60

Query: 61 V 62
          +
Sbjct: 61 I 60

The following BLAST results are available for this feature:

BLAST of CsGy4G003830 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN53141.1	3.4e-13	72.13	hypothetical protein Csa_4G022280 [Cucumis sativus]	[more]

BLAST of CsGy4G003830 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsGy4G003830 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy4G003830 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KZ52\|A0A0A0KZ52_CUCSA	2.2e-13	72.13	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G022280 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy4G003830.1	CsGy4G003830.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 40..61

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy4G003830	Cucumber (Chinese Long) v3	cgybcucB171
CsGy4G003830	Watermelon (97103) v2	cgybwmbB298
CsGy4G003830	Wax gourd	cgybwgoB355
CsGy4G003830	Wax gourd	cgybwgoB361
CsGy4G003830	Cucurbita maxima (Rimu)	cgybcmaB493
CsGy4G003830	Cucurbita maxima (Rimu)	cgybcmaB542
CsGy4G003830	Cucurbita moschata (Rifu)	cgybcmoB464
CsGy4G003830	Cucurbita moschata (Rifu)	cgybcmoB516
CsGy4G003830	Cucurbita pepo (Zucchini)	cgybcpeB503
CsGy4G003830	Cucumber (Chinese Long) v2	cgybcuB165
CsGy4G003830	Bottle gourd (USVL1VR-Ls)	cgyblsiB277
CsGy4G003830	Melon (DHL92) v3.5.1	cgybmeB269
CsGy4G003830	Melon (DHL92) v3.6.1	cgybmedB266
CsGy4G003830	Watermelon (Charleston Gray)	cgybwcgB297
CsGy4G003830	Watermelon (97103) v1	cgybwmB290
CsGy4G003830	Wild cucumber (PI 183967)	cgybcpiB168