CsGy4G003540 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy4G003540
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Uncharacterized protein
Location	Chr4 : 2200702 .. 2203916 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTAAGGGTAAGGGTAAGGTTATGATCTATTCTAGATATAAAATATGTTATAAGTAATGGATAAATTTTATAGGTCTATTATACAATATGATCTATATGTCATTGTTAATTAACATACGACATCTTTTTTAACGAATTTGAACAATTCTAATTATTCTTTCAAACTATAGTCCTTGATAATATATCATATTAATTTTACTAAACTATCAATTGTTTATTTATATATTTACAATCTACCCCGAATTTAGGACGACATATAAAATCCAACATTATGTCTACTATTGATATAGACCTTATAAGTTTATCATATAAATTCATCAACAACATATTCTAATCATGTAAAAATATCCAACTTTTTAGAAAAACATTTTAAATTGATCTTTGGGTAAGAGACTTTCATAAGTGATAAGTATTTAAAACAAAAAGTTAACTATCTCATATTTGCAAGTAGTTTTAGATTTTATAATTAGAATAGCTATTATATTTAATTTTTAGGTAGGATTACCATATCTATATATATACAAAATCACCCCCCAAAAAAATAGTTGTTAAATGAAGGCCTAGATGAATGCATAAGCCTAAACTATTAATTCTAATAAATTTCTTGTAATTGAAGAGAAACCTTTGTTGGTGGTAGAAAATCAGTTGTGAGACGTGGTCGTTGTTATTTTGTGGCTAGAAATCAAATAAATTTTGTGGCACTTTAGGGTTGGCTGTGCACAACCCTACTTTAATCTATCTATATACCTGTGGTTCTTTAAGAATTCATTTCACTTAGCCTTTTTCTTTTCTTGAAATATTCACATGACTAGAAGGATCAATAGATGTGAGATATTGATATTCGATCAACGGAGAGGTCGTTACTTTCAAATATGTCCAGGTTCACTACAATTATCCCATTATGAGATACCCAAAAACTATTGTGTGTCCATGGCTAGCTAGATGAAACATTTCTTACTTGAGATTACAACTAAATTTTCCAAATAAATGGAAAAATTAATAATTTTACTTAATAAAATTAATTATCAATGACCATCACCTTAATTTTCCAATCCAATTTAAGTTGATCAACCGGCCGGGATGGAAATATCGCAATCACCAAAAAGTCTCGGATTAATTCTTTTAAGAAAACCATATATATAAGTTCCAAAAGTTAATGAATTAACTTTGGCATCTTTGAAGCAAAAGTACTTTAATGAGGGGGCTCGTCGGGCGGTCGGAGCTTTGCGGAGAGACGTGCAGCGGCAACTGATCGGAGGCGGGCGGCTAGGGTTTGCTCAACGTGAAGAAGAAGATGGTTTGAATTTTGGCACGTTGTTCAAGATCATTTAATCATAAACAATAAATATTATTATTATTTCCATTTTTCCTAAATACTTTTCCTTTTTATATATAATAAAACTGGACCTTTTCTTTCCCCAATTAATTCATTCCACCATGTTACTTTTCACTTCCAAAAAATAATTCTTTTATTTAAATAATTATATTTTTATTTTACATTTCATAATTTAATTATATATATAATTAATTAACCATAGTACCAAAAACCCAAATTCAAAGTTAAATATTCATCCCACCAAATACTTATTCTAATTTTTACCAAACCAAATAATTTCCATTCAATCAACTAAAATTAACACTTGATAATTTTATCGTAATGAAATAAAATTAAGACAATTAAATACAAAATTACCTTAATTTTTTTTTACTTTGCATAATTGCTCCCATTAACTTTTTTTATTACTATAAAATTTAAGAAATGTTTTTGAAAAAGGAGCCAATTTTACAAAATTACTCTATGTGTGTATGTATAAAAGCAAGCCAATGAAACAACTAAATAACATCCAAAGCTACTAGTAAAATAAACCATTCAAATAAGGAGAAAATAAAATAGATGATGTATACAGCTAAAGAAAGCCATACGTTCAAGGAAATGTGTGCCATGGAATTTTGCTCTGTCTCACATGGGAAAAAGGAAACGTTTAATCAATGAATAACAACATCTTGATCTCTAGATGATCCGAGGAAAAACGTCAAGAAGCTAAGCTTGATTGCCTCCAAACAATTAGATTCAATCCAAAAAAGTTTCACATATATAGAAAGAGTTGTTTAAACCCTGACGATAAAAAACCCTTACATTTAATTTGTCACCAACACTTATTTGCATTTGAATTTATATTTATATTTTACTTTACATAAATAATTTATAAAATAAAAGAAAAGGTTAGAGAAACAAATAGTAAACAAAAATTTGGTTGGTTCTTTTTTTTCTTTTCTAAGAAGCAATAAACAATAATATTATGGTCCCGTTTGGTCATGTTACTATTTTTTATTATATGGTTCTTATTATTTGTGTTTCATATTTCTCAAAAATTAGAAAGAAAGAAAACTAACAATTGAAGACAAGCTGAAAAAAACAGGTTTTAAATTTAACTCACCAAACTATATGAAACTGGGGGAAAAAATGATACTCTAACTAATAATTTACTTTTGAAATAATTATGATTATAGAGTGTGGTTGGATTAATGAGAATATGTTAGGCAGCTATAAACCTACCTCATTTAATCTCCATTGAATTTTCCCATCTTAATTATATTTTATTGAGTGTTATTCCATAATTGAAATGTGGGTAATATAAGATAACCATTACTTACTTCTTTTTTTTTCTCCCACCATTCAATTTATTTGTTGATCAAGATTTCATATTATGAGATAACAAGGAAGAACTGATCGATCGAAACACCTCTCATCGTGCAAGTGACTACCCGTAGAAATATGGTCGAGTATAAAGTCATCATAGTCCAAAACCAGCATATAATAATCATAAGCATAAAATCTAACATAACAGTCCATACATTTAGTAGCCATTAATAATGCCTAAACCCTAAAACCAAAATCATTTCGAGCAAAAAAAATGATGGTATACCCAAAACCAAAAAATTTACCTAAAACTCACCAAAATTGCTCAAAATGCTGAAAGAAAAGGGCAGTTTGGTGGTTTGGTGGATTGGCTAGGCAAAAGAGGAAGACAGGGCTGGTGCAGGGCGCTCGACGCGGACGAAGAGAGGAACCAGCTCCGAAACTTGGCGCGACTGAAAACGGCTGAACAAAGGACGCAGTTTGCAGGGAAGAGGAAACTGGCTCAGGCGCCGGAAGAGAAAGCTTGGCGGCTCGGATTGAAAATGAAGAGTGTCGGCTGGCGCGAAAGATAG

mRNA sequence

ATGGTAAGGGTAAGGGTAAGAGAAACCTTTGTTGGTGGTAGAAAATCAGTTGTGAGACGTGGTCGTTGCAAAAGAGGAAGACAGGGCTGGTGCAGGGCGCTCGACGCGGACGAAGAGAGGAACCAGCTCCGAAACTTGGCGCGACTGAAAACGGCTGAACAAAGGACGCAGTTTGCAGGGAAGAGGAAACTGGCTCAGGCGCCGGAAGAGAAAGCTTGGCGGCTCGGATTGAAAATGAAGAGTGTCGGCTGGCGCGAAAGATAG

Coding sequence (CDS)

ATGGTAAGGGTAAGGGTAAGAGAAACCTTTGTTGGTGGTAGAAAATCAGTTGTGAGACGTGGTCGTTGCAAAAGAGGAAGACAGGGCTGGTGCAGGGCGCTCGACGCGGACGAAGAGAGGAACCAGCTCCGAAACTTGGCGCGACTGAAAACGGCTGAACAAAGGACGCAGTTTGCAGGGAAGAGGAAACTGGCTCAGGCGCCGGAAGAGAAAGCTTGGCGGCTCGGATTGAAAATGAAGAGTGTCGGCTGGCGCGAAAGATAG

Protein sequence

MVRVRVRETFVGGRKSVVRRGRCKRGRQGWCRALDADEERNQLRNLARLKTAEQRTQFAGKRKLAQAPEEKAWRLGLKMKSVGWRER

Homology

[Close]

BLAST of CsGy4G003540 vs. NCBI nr
Match: KGN53111.1 (hypothetical protein Csa_4G016500 [Cucumis sativus])

HSP 1 Score: 115.5 bits (288), Expect = 8.8e-23
Identity = 60/64 (93.75%), Postives = 60/64 (93.75%), Query Frame = 0


Query: 24 KRGRQGWCRALDADEERNQLRNLARLKTAEQRTQFAGKRKLAQAPEEKAWRLGLKMKSVG 83
          KRGRQGWCRALDADEERNQLRNLARLKTAEQRTQFAGKRKLAQAPEEKAWRLGLKMKS  
Sbjct: 8  KRGRQGWCRALDADEERNQLRNLARLKTAEQRTQFAGKRKLAQAPEEKAWRLGLKMKSSE 67

Query: 84 WRER 88
            ER
Sbjct: 68 EEER 71

[Close]

BLAST of CsGy4G003540 vs. TrEMBL
Match: tr|A0A0A0KZ29|A0A0A0KZ29_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G016500 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 5.8e-23
Identity = 60/64 (93.75%), Postives = 60/64 (93.75%), Query Frame = 0


Query: 24 KRGRQGWCRALDADEERNQLRNLARLKTAEQRTQFAGKRKLAQAPEEKAWRLGLKMKSVG 83
          KRGRQGWCRALDADEERNQLRNLARLKTAEQRTQFAGKRKLAQAPEEKAWRLGLKMKS  
Sbjct: 8  KRGRQGWCRALDADEERNQLRNLARLKTAEQRTQFAGKRKLAQAPEEKAWRLGLKMKSSE 67

Query: 84 WRER 88
            ER
Sbjct: 68 EEER 71

The following BLAST results are available for this feature:

BLAST of CsGy4G003540 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN53111.1	8.8e-23	93.75	hypothetical protein Csa_4G016500 [Cucumis sativus]	[more]

BLAST of CsGy4G003540 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsGy4G003540 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy4G003540 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KZ29\|A0A0A0KZ29_CUCSA	5.8e-23	93.75	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G016500 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy4G003540.1	CsGy4G003540.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 36..56

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy4G003540	Csa4G016500	Cucumber (Chinese Long) v2	cgybcuB165
CsGy4G003540	CSPI04G03650	Wild cucumber (PI 183967)	cgybcpiB168

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy4G003540	Silver-seed gourd	carcgybB0206
CsGy4G003540	Silver-seed gourd	carcgybB0693
CsGy4G003540	Cucumber (Chinese Long) v3	cgybcucB171
CsGy4G003540	Watermelon (97103) v2	cgybwmbB298
CsGy4G003540	Wax gourd	cgybwgoB361
CsGy4G003540	Cucurbita maxima (Rimu)	cgybcmaB485
CsGy4G003540	Cucurbita maxima (Rimu)	cgybcmaB560
CsGy4G003540	Cucurbita moschata (Rifu)	cgybcmoB455
CsGy4G003540	Cucurbita moschata (Rifu)	cgybcmoB535
CsGy4G003540	Cucurbita pepo (Zucchini)	cgybcpeB552
CsGy4G003540	Cucurbita pepo (Zucchini)	cgybcpeB575
CsGy4G003540	Bottle gourd (USVL1VR-Ls)	cgyblsiB277
CsGy4G003540	Melon (DHL92) v3.5.1	cgybmeB269
CsGy4G003540	Melon (DHL92) v3.6.1	cgybmedB266
CsGy4G003540	Watermelon (Charleston Gray)	cgybwcgB297