CsGy4G003140 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy4G003140
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	glycosyltransferase family protein
Location	Chr4 : 1999277 .. 1999869 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTCATGATGAGTGTAAGGGCTCTTTCGAGCTTATTGTTTATTTTCTGTTTACACTTTGCAGTGGCTGCAATCTTGTTTTACAATGTTGCAATTCATATGAATATTGTGTTTCATGCTGCCAGAATCCTTCAAGGGTATGATGGGTTTCTTCTTGATTCTTATAATGCTTCAATCTTTTTTTTAGTCTTCTTTTTCCCTATGAATTTGAGATGGAATTTAAAAATTGACGCCTTTCTCGATGCTGCATGCAGACCAAAAGGGAGCAAATACTAAAAATTAAAAATGCCAAGCCAGCCACTGCAGGTAATTATGACTAGTACATATAGACAAGCTTCCATTATGAGTAAGAATGATGTAGGCTTTTTCATGCATTCAAGGAAGAAGAAATTACAGTGTAATTGCCAGGATTCATAGCAATGGCTTCAGCAGTGAGGTGGAGAGAACGAGGAGGATGATCATCTGCTCGATAAACAGCTCGGAAGTAACCCATGAGCTCAGAGAAGTCTTGTTTAGGCAATCGCCACAATCGGATTGGGACCATCGTCTTGCGGAAGCGGAGTTACGTCGTACTACTCTCGTCGCTCGCTGA

mRNA sequence

ATGGCTCATGATGAGTGTAAGGGCTCTTTCGAGCTTATTGTTTATTTTCTGTTTACACTTTGCAGTGGCTGCAATCTTGTTTTACAATGTTGCAATTCATATGAATATTGTGTTTCATGCTGCCAGAATCCTTCAAGGACCAAAAGGGAGCAAATACTAAAAATTAAAAATGCCAAGCCAGCCACTGCAGGAAGAAGAAATTACAGTGTAATTGCCAGGATTCATAGCAATGGCTTCAGCAGTGAGGTGGAGAGAACGAGGAGGATGATCATCTGCTCGATAAACAGCTCGGAAGTAACCCATGAGCTCAGAGAAGTCTTGTTTAGGCAATCGCCACAATCGGATTGGGACCATCGTCTTGCGGAAGCGGAGTTACGTCGTACTACTCTCGTCGCTCGCTGA

Coding sequence (CDS)

ATGGCTCATGATGAGTGTAAGGGCTCTTTCGAGCTTATTGTTTATTTTCTGTTTACACTTTGCAGTGGCTGCAATCTTGTTTTACAATGTTGCAATTCATATGAATATTGTGTTTCATGCTGCCAGAATCCTTCAAGGACCAAAAGGGAGCAAATACTAAAAATTAAAAATGCCAAGCCAGCCACTGCAGGAAGAAGAAATTACAGTGTAATTGCCAGGATTCATAGCAATGGCTTCAGCAGTGAGGTGGAGAGAACGAGGAGGATGATCATCTGCTCGATAAACAGCTCGGAAGTAACCCATGAGCTCAGAGAAGTCTTGTTTAGGCAATCGCCACAATCGGATTGGGACCATCGTCTTGCGGAAGCGGAGTTACGTCGTACTACTCTCGTCGCTCGCTGA

Protein sequence

MAHDECKGSFELIVYFLFTLCSGCNLVLQCCNSYEYCVSCCQNPSRTKREQILKIKNAKPATAGRRNYSVIARIHSNGFSSEVERTRRMIICSINSSEVTHELREVLFRQSPQSDWDHRLAEAELRRTTLVAR

Homology

[Close]

BLAST of CsGy4G003140 vs. NCBI nr
Match: KGN53067.1 (hypothetical protein Csa_4G014590 [Cucumis sativus])

HSP 1 Score: 270.4 bits (690), Expect = 3.3e-69
Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 0


Query: 1   MAHDECKGSFELIVYFLFTLCSGCNLVLQCCNSYEYCVSCCQNPSRTKREQILKIKNAKP 60
           MAHDECKGSFELIVYFLFTLCSGCNLVLQCCNSYEYCVSCCQNPSRTKREQILKIKNAKP
Sbjct: 1   MAHDECKGSFELIVYFLFTLCSGCNLVLQCCNSYEYCVSCCQNPSRTKREQILKIKNAKP 60

Query: 61  ATAGRRNYSVIARIHSNGFSSEVERTRRMIICSINSSEVTHELREVLFRQSPQSDWDHRL 120
           ATAGRRNYSVIARIHSNGFSSEVERTRRMIICSINSSEVTHELREVLFRQSPQSDWDHRL
Sbjct: 61  ATAGRRNYSVIARIHSNGFSSEVERTRRMIICSINSSEVTHELREVLFRQSPQSDWDHRL 120

Query: 121 AEAELRRTTLVAR 134
           AEAELRRTTLVAR
Sbjct: 121 AEAELRRTTLVAR 133

[Close]

BLAST of CsGy4G003140 vs. NCBI nr
Match: XP_011653057.1 (PREDICTED: uncharacterized protein LOC101217783 [Cucumis sativus] >KGN53089.1 hypothetical protein Csa_4G015790 [Cucumis sativus])

HSP 1 Score: 91.3 bits (225), Expect = 2.7e-15
Identity = 51/82 (62.20%), Postives = 54/82 (65.85%), Query Frame = 0


Query: 21  CSGCNLVLQCCNSYEYCVSCCQNPSRTKREQILKIKNAKPATAGRRNYSVIARIHSNGFS 80
           C GCNLVLQCCNSYEYCVSCCQNPSRTKREQILKIK AKPATAG          +++ F 
Sbjct: 77  CHGCNLVLQCCNSYEYCVSCCQNPSRTKREQILKIKIAKPATAG---------TYASVFD 136

Query: 81  SEVERTRRMIICSINSSEVTHE 103
             V R      C  NS  V HE
Sbjct: 137 FCVGR------CRHNSESVVHE 143

[Close]

BLAST of CsGy4G003140 vs. NCBI nr
Match: XP_008453981.1 (PREDICTED: uncharacterized protein LOC103494541 isoform X1 [Cucumis melo])

HSP 1 Score: 90.9 bits (224), Expect = 3.5e-15
Identity = 51/82 (62.20%), Postives = 54/82 (65.85%), Query Frame = 0


Query: 21  CSGCNLVLQCCNSYEYCVSCCQNPSRTKREQILKIKNAKPATAGRRNYSVIARIHSNGFS 80
           C GCNLVLQCCNSYEYCVSCCQNPSRTKREQILKIK AKPATAG          +++ F 
Sbjct: 77  CHGCNLVLQCCNSYEYCVSCCQNPSRTKREQILKIKIAKPATAG---------TYASIFD 136

Query: 81  SEVERTRRMIICSINSSEVTHE 103
             V R      C  NS  V HE
Sbjct: 137 FCVGR------CRHNSESVVHE 143

[Close]

BLAST of CsGy4G003140 vs. NCBI nr
Match: XP_023527421.1 (uncharacterized protein LOC111790656 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 85.9 bits (211), Expect = 1.1e-13
Identity = 49/99 (49.49%), Postives = 61/99 (61.62%), Query Frame = 0


Query: 21  CSGCNLVLQCCNSYEYCVSCCQNPSRTKREQILKIKNAKPATA-----------GRRNYS 80
           C GCNLV QCCNSYEYCVSCCQ+PSRTKREQILKIK AKP+TA           GR  +S
Sbjct: 77  CHGCNLVSQCCNSYEYCVSCCQDPSRTKREQILKIKIAKPSTAGTYAGVFDFCVGRCRHS 136

Query: 81  VIARIHSNGFSSEVERTRRMIICS--INSSEVTHELREV 107
             + +H N + S+      +   S  +N +E+  +L  V
Sbjct: 137 SESVVHENAYRSDYHHCFSLPSYSSGVNGTELEFKLNGV 175

[Close]

BLAST of CsGy4G003140 vs. NCBI nr
Match: XP_022955359.1 (UPF0454 protein C12orf49 homolog isoform X2 [Cucurbita moschata])

HSP 1 Score: 85.5 bits (210), Expect = 1.5e-13
Identity = 48/82 (58.54%), Postives = 52/82 (63.41%), Query Frame = 0


Query: 21  CSGCNLVLQCCNSYEYCVSCCQNPSRTKREQILKIKNAKPATAGRRNYSVIARIHSNGFS 80
           C GCNLV QCCNSYEYCVSCCQ+PSRTKREQILKIK AKP+TAG          ++  F 
Sbjct: 77  CHGCNLVSQCCNSYEYCVSCCQDPSRTKREQILKIKIAKPSTAG---------TYAGVFD 136

Query: 81  SEVERTRRMIICSINSSEVTHE 103
             V R      C  NS  V HE
Sbjct: 137 FCVGR------CRHNSESVVHE 143

[Close]

BLAST of CsGy4G003140 vs. TAIR10
Match: AT3G59390.2 (unknown protein)

HSP 1 Score: 73.2 bits (178), Expect = 1.4e-13
Identity = 35/73 (47.95%), Postives = 48/73 (65.75%), Query Frame = 0


Query: 21  CSGCNLVLQCCNSYEYCVSCCQNPSRTKREQILKIKNAKPAT-----------AGRRNYS 80
           C GCN++ QCCNSYE+CVSCC NPS+T  E+++K+K AKPAT           AGR  ++
Sbjct: 79  CHGCNILSQCCNSYEFCVSCCLNPSQTLLEKVVKVKVAKPATSGTYKSVFDFCAGRCRHN 138

Query: 81  VIARIHSNGFSSE 83
             + +H N + SE
Sbjct: 139 SESVVHENAYHSE 151

[Close]

BLAST of CsGy4G003140 vs. TrEMBL
Match: tr|A0A0A0KXE1|A0A0A0KXE1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G014590 PE=4 SV=1)

HSP 1 Score: 270.4 bits (690), Expect = 2.2e-69
Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 0


Query: 1   MAHDECKGSFELIVYFLFTLCSGCNLVLQCCNSYEYCVSCCQNPSRTKREQILKIKNAKP 60
           MAHDECKGSFELIVYFLFTLCSGCNLVLQCCNSYEYCVSCCQNPSRTKREQILKIKNAKP
Sbjct: 1   MAHDECKGSFELIVYFLFTLCSGCNLVLQCCNSYEYCVSCCQNPSRTKREQILKIKNAKP 60

Query: 61  ATAGRRNYSVIARIHSNGFSSEVERTRRMIICSINSSEVTHELREVLFRQSPQSDWDHRL 120
           ATAGRRNYSVIARIHSNGFSSEVERTRRMIICSINSSEVTHELREVLFRQSPQSDWDHRL
Sbjct: 61  ATAGRRNYSVIARIHSNGFSSEVERTRRMIICSINSSEVTHELREVLFRQSPQSDWDHRL 120

Query: 121 AEAELRRTTLVAR 134
           AEAELRRTTLVAR
Sbjct: 121 AEAELRRTTLVAR 133

[Close]

BLAST of CsGy4G003140 vs. TrEMBL
Match: tr|A0A0A0KW54|A0A0A0KW54_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G015790 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 1.8e-15
Identity = 51/82 (62.20%), Postives = 54/82 (65.85%), Query Frame = 0


Query: 21  CSGCNLVLQCCNSYEYCVSCCQNPSRTKREQILKIKNAKPATAGRRNYSVIARIHSNGFS 80
           C GCNLVLQCCNSYEYCVSCCQNPSRTKREQILKIK AKPATAG          +++ F 
Sbjct: 77  CHGCNLVLQCCNSYEYCVSCCQNPSRTKREQILKIKIAKPATAG---------TYASVFD 136

Query: 81  SEVERTRRMIICSINSSEVTHE 103
             V R      C  NS  V HE
Sbjct: 137 FCVGR------CRHNSESVVHE 143

[Close]

BLAST of CsGy4G003140 vs. TrEMBL
Match: tr|A0A1S3BX18|A0A1S3BX18_CUCME (uncharacterized protein LOC103494541 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103494541 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 2.3e-15
Identity = 51/82 (62.20%), Postives = 54/82 (65.85%), Query Frame = 0


Query: 21  CSGCNLVLQCCNSYEYCVSCCQNPSRTKREQILKIKNAKPATAGRRNYSVIARIHSNGFS 80
           C GCNLVLQCCNSYEYCVSCCQNPSRTKREQILKIK AKPATAG          +++ F 
Sbjct: 77  CHGCNLVLQCCNSYEYCVSCCQNPSRTKREQILKIKIAKPATAG---------TYASIFD 136

Query: 81  SEVERTRRMIICSINSSEVTHE 103
             V R      C  NS  V HE
Sbjct: 137 FCVGR------CRHNSESVVHE 143

[Close]

BLAST of CsGy4G003140 vs. TrEMBL
Match: tr|A0A1Q3ATB1|A0A1Q3ATB1_CEPFO (DUF2054 domain-containing protein (Fragment) OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_02482 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 9.2e-12
Identity = 35/51 (68.63%), Postives = 43/51 (84.31%), Query Frame = 0


Query: 21  CSGCNLVLQCCNSYEYCVSCCQNPSRTKREQILKIKNAKPATAGRRNYSVI 72
           C GCNL+  CCNSYEYCVSCC NP+RT++EQ+LK+K AKPATAG  NY+ +
Sbjct: 73  CHGCNLLSLCCNSYEYCVSCCLNPARTQKEQVLKVKIAKPATAG--NYASV 121

[Close]

BLAST of CsGy4G003140 vs. TrEMBL
Match: tr|A0A059AV10|A0A059AV10_EUCGR (Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_H00372 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 1.2e-11
Identity = 38/73 (52.05%), Postives = 49/73 (67.12%), Query Frame = 0


Query: 21  CSGCNLVLQCCNSYEYCVSCCQNPSRTKREQILKIKNAKPATA-----------GRRNYS 80
           C GCNL  QCCNSYEYCVSCC NPSRT+++++LK+K AKPATA           GR  ++
Sbjct: 78  CYGCNLFSQCCNSYEYCVSCCLNPSRTQKDEVLKVKIAKPATAGTYSSVFDFCTGRCRHN 137

Query: 81  VIARIHSNGFSSE 83
             + +H N + SE
Sbjct: 138 SESVVHENAYLSE 150

The following BLAST results are available for this feature:

BLAST of CsGy4G003140 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN53067.1	3.3e-69	100.00	hypothetical protein Csa_4G014590 [Cucumis sativus]	[more]
XP_011653057.1	2.7e-15	62.20	PREDICTED: uncharacterized protein LOC101217783 [Cucumis sativus] >KGN53089.1 hy...	[more]
XP_008453981.1	3.5e-15	62.20	PREDICTED: uncharacterized protein LOC103494541 isoform X1 [Cucumis melo]	[more]
XP_023527421.1	1.1e-13	49.49	uncharacterized protein LOC111790656 [Cucurbita pepo subsp. pepo]	[more]
XP_022955359.1	1.5e-13	58.54	UPF0454 protein C12orf49 homolog isoform X2 [Cucurbita moschata]	[more]

BLAST of CsGy4G003140 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G59390.2	1.4e-13	47.95	unknown protein	[more]

BLAST of CsGy4G003140 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy4G003140 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KXE1\|A0A0A0KXE1_CUCSA	2.2e-69	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G014590 PE=4 SV=1	[more]
tr\|A0A0A0KW54\|A0A0A0KW54_CUCSA	1.8e-15	62.20	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G015790 PE=4 SV=1	[more]
tr\|A0A1S3BX18\|A0A1S3BX18_CUCME	2.3e-15	62.20	uncharacterized protein LOC103494541 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A1Q3ATB1\|A0A1Q3ATB1_CEPFO	9.2e-12	68.63	DUF2054 domain-containing protein (Fragment) OS=Cephalotus follicularis OX=3775 ...	[more]
tr\|A0A059AV10\|A0A059AV10_EUCGR	1.2e-11	52.05	Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_H00372 PE=4 SV...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR019352	UPF0454

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy4G003140.1	CsGy4G003140.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019352	Uncharacterised protein family UPF0454	PFAM	PF10218	DUF2054	coord: 20..62 e-value: 1.8E-8 score: 34.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy4G003140	Csa4G014590	Cucumber (Chinese Long) v2	cgybcuB165
CsGy4G003140	Csa4G015790	Cucumber (Chinese Long) v2	cgybcuB172
CsGy4G003140	Lsi07G000460	Bottle gourd (USVL1VR-Ls)	cgyblsiB284
CsGy4G003140	MELO3C017715.2	Melon (DHL92) v3.6.1	cgybmedB277

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy4G003140	Watermelon (97103) v2	cgybwmbB299
CsGy4G003140	Wax gourd	cgybwgoB357
CsGy4G003140	Cucurbita maxima (Rimu)	cgybcmaB485
CsGy4G003140	Cucurbita maxima (Rimu)	cgybcmaB560
CsGy4G003140	Cucurbita moschata (Rifu)	cgybcmoB455
CsGy4G003140	Cucurbita moschata (Rifu)	cgybcmoB535
CsGy4G003140	Cucurbita pepo (Zucchini)	cgybcpeB552
CsGy4G003140	Cucurbita pepo (Zucchini)	cgybcpeB575
CsGy4G003140	Bottle gourd (USVL1VR-Ls)	cgyblsiB277
CsGy4G003140	Melon (DHL92) v3.5.1	cgybmeB269
CsGy4G003140	Melon (DHL92) v3.6.1	cgybmedB266
CsGy4G003140	Watermelon (Charleston Gray)	cgybwcgB298
CsGy4G003140	Watermelon (97103) v1	cgybwmB291
CsGy4G003140	Wild cucumber (PI 183967)	cgybcpiB168
CsGy4G003140	Silver-seed gourd	carcgybB0402
CsGy4G003140	Silver-seed gourd	carcgybB0693
CsGy4G003140	Cucumber (Chinese Long) v3	cgybcucB171