CsGy4G002110 (gene) Cucumber (Gy14) v2

Overview
NameCsGy4G002110
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
DescriptionUncharacterized protein
LocationChr4 : 1243822 .. 1244129 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGGCCGAGGCGGAGGAGAGGCCACGGCGGAGAGGGGACAATGAGAGGAACAAAAAGGAGACAGGAAGAACTGTAGAAGAGAAAGGGGAAGAAGATTGAGAGAAGGCAAATAGGTGAAAGGGGGCAGAGTGTGGGATTAGTTTTGTCTGAAGAGCATTTATGTGCAGCACGTGGGCTTAAGGCTTAGGCCAACCCTTTGGGCTGCCTTTGCCTCTTCTTCTTCTTCTTCTTCTTCTCCCCCCCCCCCCCATCCATTGCCTCCTCCTTTTATTACTTGTGGCTCCCTCTTCTCATTTCACCCCTAA

mRNA sequence

ATGGAGGCCGAGGCGGAGGAGAGGCCACGGCGGAGAGGGGACAATGAGAGGAACAAAAAGGAGACAGGAAGAACTCACGTGGGCTTAAGGCTTAGGCCAACCCTTTGGGCTGCCTTTGCCTCTTCTTCTTCTTCTTCTTCTTCTCCCCCCCCCCCCCATCCATTGCCTCCTCCTTTTATTACTTGTGGCTCCCTCTTCTCATTTCACCCCTAA

Coding sequence (CDS)

ATGGAGGCCGAGGCGGAGGAGAGGCCACGGCGGAGAGGGGACAATGAGAGGAACAAAAAGGAGACAGGAAGAACTCACGTGGGCTTAAGGCTTAGGCCAACCCTTTGGGCTGCCTTTGCCTCTTCTTCTTCTTCTTCTTCTTCTCCCCCCCCCCCCCATCCATTGCCTCCTCCTTTTATTACTTGTGGCTCCCTCTTCTCATTTCACCCCTAA

Protein sequence

MEAEAEERPRRRGDNERNKKETGRTHVGLRLRPTLWAAFASSSSSSSSPPPPHPLPPPFITCGSLFSFHP
Homology
[Close]
BLAST of CsGy4G002110 vs. NCBI nr
Match: KGN52953.1 (hypothetical protein Csa_4G007090 [Cucumis sativus])

HSP 1 Score: 91.3 bits (225), Expect = 1.4e-15
Identity = 69/70 (98.57%), Postives = 69/70 (98.57%), Query Frame = 0 

Query: 1  MEAEAEERPRRRGDNERNKKETGRTHVGLRLRPTLWAAFXXXXXXXXXXXXXXXXXXXFI 60
          MEAEAEERPRRRGDNERNKKETGRTHVGLRLRPTLWAA XXXXXXXXXXXXXXXXXXXFI
Sbjct: 1  MEAEAEERPRRRGDNERNKKETGRTHVGLRLRPTLWAA-XXXXXXXXXXXXXXXXXXXFI 60

Query: 61 TCGSLFSFHP 71
          TCGSLFSFHP
Sbjct: 61 TCGSLFSFHP 69

[Close]
BLAST of CsGy4G002110 vs. TrEMBL
Match: tr|A0A0A0KTS9|A0A0A0KTS9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G007090 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 9.4e-16
Identity = 69/70 (98.57%), Postives = 69/70 (98.57%), Query Frame = 0 

Query: 1  MEAEAEERPRRRGDNERNKKETGRTHVGLRLRPTLWAAFXXXXXXXXXXXXXXXXXXXFI 60
          MEAEAEERPRRRGDNERNKKETGRTHVGLRLRPTLWAA XXXXXXXXXXXXXXXXXXXFI
Sbjct: 1  MEAEAEERPRRRGDNERNKKETGRTHVGLRLRPTLWAA-XXXXXXXXXXXXXXXXXXXFI 60

Query: 61 TCGSLFSFHP 71
          TCGSLFSFHP
Sbjct: 61 TCGSLFSFHP 69

The following BLAST results are available for this feature:
BLAST of CsGy4G002110 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN52953.11.4e-1598.57hypothetical protein Csa_4G007090 [Cucumis sativus][more]
BLAST of CsGy4G002110 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsGy4G002110 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsGy4G002110 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KTS9|A0A0A0KTS9_CUCSA9.4e-1698.57Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G007090 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy4G002110.1CsGy4G002110.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 39..58

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsGy4G002110Csa4G007090Cucumber (Chinese Long) v2cgybcuB165
CsGy4G002110CsaV3_4G002120Cucumber (Chinese Long) v3cgybcucB171
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsGy4G002110Watermelon (97103) v2cgybwmbB306
CsGy4G002110Wax gourdcgybwgoB353
CsGy4G002110Cucurbita maxima (Rimu)cgybcmaB485
CsGy4G002110Cucurbita maxima (Rimu)cgybcmaB560
CsGy4G002110Cucurbita moschata (Rifu)cgybcmoB455
CsGy4G002110Cucurbita pepo (Zucchini)cgybcpeB552
CsGy4G002110Cucurbita pepo (Zucchini)cgybcpeB575
CsGy4G002110Bottle gourd (USVL1VR-Ls)cgyblsiB285
CsGy4G002110Melon (DHL92) v3.5.1cgybmeB269
CsGy4G002110Melon (DHL92) v3.6.1cgybmedB266
CsGy4G002110Watermelon (Charleston Gray)cgybwcgB304
CsGy4G002110Watermelon (97103) v1cgybwmB282
CsGy4G002110Wild cucumber (PI 183967)cgybcpiB168
CsGy4G002110Silver-seed gourdcarcgybB0127