CsGy3G042460 (gene) Cucumber (Gy14) v2
The following sequences are available for this feature:
Legend: CDSexon Hold the cursor over a type above to highlight its positions in the sequence below.ATGTCTTCCACTACCAATCTGTCTCTTGATTGCTGTGTTCGCAGCATCCCCACCACCGCAGATAAGCAACTCGTGGAAATCCGATTAAGGAGATTCAGCAAATTAGTGTCTCCATTTTCTAACCAAAACATCCAACAAACTTTCCCAACTTCGATTTCCAATGCTCTGTTTCACTTTCCTCTGCCAGAGCTTGAACTTGAAAACCCATCCTTATTCCACGACTTCCTCCTTCAATTCCTCTCTCCGGCTGACTCCGCCGCCATATTCCACAACATCTCCTCCTTCGCCCTTCAACTGGCTGCCGGCAACCTCAATCTCAACTTCCACCTCATCGCCACAGTGGATTTACTCTACACGATCTCGATAAACCTGAACCTGAACCCACCACAATATTCACCGCCGGTGAGGAATGGGGTGCCGGCGTCGGTCATGGAGCGGCTTATGAATGAGAAATATGATGATGGGAATGGAGGGAAGGGATGGGAGGTCAATGCTGCGTTTGTTATGAGGATCTCAACTGTGAAAGGGAAGAGGAAAAGGAGGAGGCAACGAGAATCCCCTGCGGGCACGTCTATCACAAGTCCTGTATTCTCAAATGGCTCAACGTCAACAATTCATGTCCTTTGTGCAGAAGTGAATTTCGTTGAAATTTTAACCAAAGGTTACTTAACCCTAAGTAGAAATAGGAGATTTAAATTCTGA ATGTCTTCCACTACCAATCTGTCTCTTGATTGCTGTGTTCGCAGCATCCCCACCACCGCAGATAAGCAACTCGTGGAAATCCGATTAAGGAGATTCAGCAAATTAGTGTCTCCATTTTCTAACCAAAACATCCAACAAACTTTCCCAACTTCGATTTCCAATGCTCTGTTTCACTTTCCTCTGCCAGAGCTTGAACTTGAAAACCCATCCTTATTCCACGACTTCCTCCTTCAATTCCTCTCTCCGGCTGACTCCGCCGCCATATTCCACAACATCTCCTCCTTCGCCCTTCAACTGGCTGCCGGCAACCTCAATCTCAACTTCCACCTCATCGCCACAGTGGATTTACTCTACACGATCTCGATAAACCTGAACCTGAACCCACCACAATATTCACCGCCGGTGAGGAATGGGGTGCCGGCGTCGGTCATGGAGCGGCTTATGAATGAGAAATATGATGATGGGAATGGAGGGAAGGGATGGGAGGTCAATGCTGCGTTTGTTATGAGGATCTCAACTGTGAAAGGGAAGAGGAAAAGGAGGAGGCAACGAGAATCCCCTGCGGGCACGTCTATCACAAGTCCTGTATTCTCAAATGGCTCAACGTCAACAATTCATGTCCTTTGTGCAGAAGTGAATTTCGTTGAAATTTTAACCAAAGGTTACTTAACCCTAAGTAGAAATAGGAGATTTAAATTCTGA ATGTCTTCCACTACCAATCTGTCTCTTGATTGCTGTGTTCGCAGCATCCCCACCACCGCAGATAAGCAACTCGTGGAAATCCGATTAAGGAGATTCAGCAAATTAGTGTCTCCATTTTCTAACCAAAACATCCAACAAACTTTCCCAACTTCGATTTCCAATGCTCTGTTTCACTTTCCTCTGCCAGAGCTTGAACTTGAAAACCCATCCTTATTCCACGACTTCCTCCTTCAATTCCTCTCTCCGGCTGACTCCGCCGCCATATTCCACAACATCTCCTCCTTCGCCCTTCAACTGGCTGCCGGCAACCTCAATCTCAACTTCCACCTCATCGCCACAGTGGATTTACTCTACACGATCTCGATAAACCTGAACCTGAACCCACCACAATATTCACCGCCGGTGAGGAATGGGGTGCCGGCGTCGGTCATGGAGCGGCTTATGAATGAGAAATATGATGATGGGAATGGAGGGAAGGGATGGGAGGTCAATGCTGCGTTTGTTATGAGGATCTCAACTGTGAAAGGGAAGAGGAAAAGGAGGAGGCAACGAGAATCCCCTGCGGGCACGTCTATCACAAGTCCTGTATTCTCAAATGGCTCAACGTCAACAATTCATGTCCTTTGTGCAGAAGTGAATTTCGTTGAAATTTTAACCAAAGGTTACTTAACCCTAAGTAGAAATAGGAGATTTAAATTCTGA MSSTTNLSLDCCVRSIPTTADKQLVEIRLRRFSKLVSPFSNQNIQQTFPTSISNALFHFPLPELELENPSLFHDFLLQFLSPADSAAIFHNISSFALQLAAGNLNLNFHLIATVDLLYTISINLNLNPPQYSPPVRNGVPASVMERLMNEKYDDGNGGKGWEVNAAFVMRISTVKGKRKRRRQRESPAGTSITSPVFSNGSTSTIHVLCAEVNFVEILTKGYLTLSRNRRFKF
BLAST of CsGy3G042460 vs. NCBI nr
Match: XP_011652885.1 (PREDICTED: RING-H2 finger protein ATL66-like [Cucumis sativus] >KGN60202.1 hypothetical protein Csa_3G889100 [Cucumis sativus]) HSP 1 Score: 313.5 bits (802), Expect = 5.9e-82 Identity = 159/160 (99.38%), Postives = 160/160 (100.00%), Query Frame = 0
BLAST of CsGy3G042460 vs. NCBI nr
Match: XP_008466247.1 (PREDICTED: E3 ubiquitin-protein ligase synoviolin B-like [Cucumis melo]) HSP 1 Score: 254.6 bits (649), Expect = 3.2e-64 Identity = 133/159 (83.65%), Postives = 145/159 (91.19%), Query Frame = 0
BLAST of CsGy3G042460 vs. NCBI nr
Match: XP_011650219.1 (PREDICTED: RING-H2 finger protein ATL16-like [Cucumis sativus] >KGN63362.1 hypothetical protein Csa_2G432790 [Cucumis sativus]) HSP 1 Score: 116.7 bits (291), Expect = 1.1e-22 Identity = 83/173 (47.98%), Postives = 102/173 (58.96%), Query Frame = 0
BLAST of CsGy3G042460 vs. NCBI nr
Match: KGN54851.1 (hypothetical protein Csa_4G551140 [Cucumis sativus]) HSP 1 Score: 110.5 bits (275), Expect = 7.6e-21 Identity = 82/193 (42.49%), Postives = 113/193 (58.55%), Query Frame = 0
BLAST of CsGy3G042460 vs. NCBI nr
Match: XP_023006826.1 (E3 ubiquitin-protein ligase RNF126-like [Cucurbita maxima]) HSP 1 Score: 95.1 bits (235), Expect = 3.3e-16 Identity = 62/137 (45.26%), Postives = 86/137 (62.77%), Query Frame = 0
BLAST of CsGy3G042460 vs. TrEMBL
Match: tr|A0A0A0LHI3|A0A0A0LHI3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G889100 PE=4 SV=1) HSP 1 Score: 313.5 bits (802), Expect = 3.9e-82 Identity = 159/160 (99.38%), Postives = 160/160 (100.00%), Query Frame = 0
BLAST of CsGy3G042460 vs. TrEMBL
Match: tr|A0A1S3CR16|A0A1S3CR16_CUCME (E3 ubiquitin-protein ligase synoviolin B-like OS=Cucumis melo OX=3656 GN=LOC103503717 PE=4 SV=1) HSP 1 Score: 254.6 bits (649), Expect = 2.1e-64 Identity = 133/159 (83.65%), Postives = 145/159 (91.19%), Query Frame = 0
BLAST of CsGy3G042460 vs. TrEMBL
Match: tr|A0A0A0LRB0|A0A0A0LRB0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G432790 PE=4 SV=1) HSP 1 Score: 116.7 bits (291), Expect = 7.0e-23 Identity = 83/173 (47.98%), Postives = 102/173 (58.96%), Query Frame = 0
BLAST of CsGy3G042460 vs. TrEMBL
Match: tr|A0A0A0L3Z2|A0A0A0L3Z2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G551140 PE=4 SV=1) HSP 1 Score: 110.5 bits (275), Expect = 5.0e-21 Identity = 82/193 (42.49%), Postives = 113/193 (58.55%), Query Frame = 0
The following BLAST results are available for this feature:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |