CsGy3G042460 (gene) Cucumber (Gy14) v2

NameCsGy3G042460
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
DescriptionE3 ubiquitin-protein ligase synoviolin B-like
LocationChr3 : 39543122 .. 39543823 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTTCCACTACCAATCTGTCTCTTGATTGCTGTGTTCGCAGCATCCCCACCACCGCAGATAAGCAACTCGTGGAAATCCGATTAAGGAGATTCAGCAAATTAGTGTCTCCATTTTCTAACCAAAACATCCAACAAACTTTCCCAACTTCGATTTCCAATGCTCTGTTTCACTTTCCTCTGCCAGAGCTTGAACTTGAAAACCCATCCTTATTCCACGACTTCCTCCTTCAATTCCTCTCTCCGGCTGACTCCGCCGCCATATTCCACAACATCTCCTCCTTCGCCCTTCAACTGGCTGCCGGCAACCTCAATCTCAACTTCCACCTCATCGCCACAGTGGATTTACTCTACACGATCTCGATAAACCTGAACCTGAACCCACCACAATATTCACCGCCGGTGAGGAATGGGGTGCCGGCGTCGGTCATGGAGCGGCTTATGAATGAGAAATATGATGATGGGAATGGAGGGAAGGGATGGGAGGTCAATGCTGCGTTTGTTATGAGGATCTCAACTGTGAAAGGGAAGAGGAAAAGGAGGAGGCAACGAGAATCCCCTGCGGGCACGTCTATCACAAGTCCTGTATTCTCAAATGGCTCAACGTCAACAATTCATGTCCTTTGTGCAGAAGTGAATTTCGTTGAAATTTTAACCAAAGGTTACTTAACCCTAAGTAGAAATAGGAGATTTAAATTCTGA

mRNA sequence

ATGTCTTCCACTACCAATCTGTCTCTTGATTGCTGTGTTCGCAGCATCCCCACCACCGCAGATAAGCAACTCGTGGAAATCCGATTAAGGAGATTCAGCAAATTAGTGTCTCCATTTTCTAACCAAAACATCCAACAAACTTTCCCAACTTCGATTTCCAATGCTCTGTTTCACTTTCCTCTGCCAGAGCTTGAACTTGAAAACCCATCCTTATTCCACGACTTCCTCCTTCAATTCCTCTCTCCGGCTGACTCCGCCGCCATATTCCACAACATCTCCTCCTTCGCCCTTCAACTGGCTGCCGGCAACCTCAATCTCAACTTCCACCTCATCGCCACAGTGGATTTACTCTACACGATCTCGATAAACCTGAACCTGAACCCACCACAATATTCACCGCCGGTGAGGAATGGGGTGCCGGCGTCGGTCATGGAGCGGCTTATGAATGAGAAATATGATGATGGGAATGGAGGGAAGGGATGGGAGGTCAATGCTGCGTTTGTTATGAGGATCTCAACTGTGAAAGGGAAGAGGAAAAGGAGGAGGCAACGAGAATCCCCTGCGGGCACGTCTATCACAAGTCCTGTATTCTCAAATGGCTCAACGTCAACAATTCATGTCCTTTGTGCAGAAGTGAATTTCGTTGAAATTTTAACCAAAGGTTACTTAACCCTAAGTAGAAATAGGAGATTTAAATTCTGA

Coding sequence (CDS)

ATGTCTTCCACTACCAATCTGTCTCTTGATTGCTGTGTTCGCAGCATCCCCACCACCGCAGATAAGCAACTCGTGGAAATCCGATTAAGGAGATTCAGCAAATTAGTGTCTCCATTTTCTAACCAAAACATCCAACAAACTTTCCCAACTTCGATTTCCAATGCTCTGTTTCACTTTCCTCTGCCAGAGCTTGAACTTGAAAACCCATCCTTATTCCACGACTTCCTCCTTCAATTCCTCTCTCCGGCTGACTCCGCCGCCATATTCCACAACATCTCCTCCTTCGCCCTTCAACTGGCTGCCGGCAACCTCAATCTCAACTTCCACCTCATCGCCACAGTGGATTTACTCTACACGATCTCGATAAACCTGAACCTGAACCCACCACAATATTCACCGCCGGTGAGGAATGGGGTGCCGGCGTCGGTCATGGAGCGGCTTATGAATGAGAAATATGATGATGGGAATGGAGGGAAGGGATGGGAGGTCAATGCTGCGTTTGTTATGAGGATCTCAACTGTGAAAGGGAAGAGGAAAAGGAGGAGGCAACGAGAATCCCCTGCGGGCACGTCTATCACAAGTCCTGTATTCTCAAATGGCTCAACGTCAACAATTCATGTCCTTTGTGCAGAAGTGAATTTCGTTGAAATTTTAACCAAAGGTTACTTAACCCTAAGTAGAAATAGGAGATTTAAATTCTGA

Protein sequence

MSSTTNLSLDCCVRSIPTTADKQLVEIRLRRFSKLVSPFSNQNIQQTFPTSISNALFHFPLPELELENPSLFHDFLLQFLSPADSAAIFHNISSFALQLAAGNLNLNFHLIATVDLLYTISINLNLNPPQYSPPVRNGVPASVMERLMNEKYDDGNGGKGWEVNAAFVMRISTVKGKRKRRRQRESPAGTSITSPVFSNGSTSTIHVLCAEVNFVEILTKGYLTLSRNRRFKF
BLAST of CsGy3G042460 vs. NCBI nr
Match: XP_011652885.1 (PREDICTED: RING-H2 finger protein ATL66-like [Cucumis sativus] >KGN60202.1 hypothetical protein Csa_3G889100 [Cucumis sativus])

HSP 1 Score: 313.5 bits (802), Expect = 5.9e-82
Identity = 159/160 (99.38%), Postives = 160/160 (100.00%), Query Frame = 0

Query: 1   MSSTTNLSLDCCVRSIPTTADKQLVEIRLRRFSKLVSPFSNQNIQQTFPTSISNALFHFP 60
           MSSTTNLSLDCCVRSIPTTADKQLVEIRLRRFSKLVSPFSNQNIQQTFPTSISNALFHFP
Sbjct: 1   MSSTTNLSLDCCVRSIPTTADKQLVEIRLRRFSKLVSPFSNQNIQQTFPTSISNALFHFP 60

Query: 61  LPELELENPSLFHDFLLQFLSPADSAAIFHNISSFALQLAAGNLNLNFHLIATVDLLYTI 120
           LPELELENPSLFHDFLLQFLSPADSAAIFHNISSFALQLAAGNLNLNFHLIATVDLLYTI
Sbjct: 61  LPELELENPSLFHDFLLQFLSPADSAAIFHNISSFALQLAAGNLNLNFHLIATVDLLYTI 120

Query: 121 SINLNLNPPQYSPPVRNGVPASVMERLMNEKYDDGNGGKG 161
           SINLNLNPPQYSPPVRNGVPASVMERLMNEKYDDGNGG+G
Sbjct: 121 SINLNLNPPQYSPPVRNGVPASVMERLMNEKYDDGNGGEG 160

BLAST of CsGy3G042460 vs. NCBI nr
Match: XP_008466247.1 (PREDICTED: E3 ubiquitin-protein ligase synoviolin B-like [Cucumis melo])

HSP 1 Score: 254.6 bits (649), Expect = 3.2e-64
Identity = 133/159 (83.65%), Postives = 145/159 (91.19%), Query Frame = 0

Query: 1   MSSTTNLSLDCCVR-SIPTTADKQLVEIRLRRFSKLVSPFSNQNIQQTFPTSISNALFHF 60
           MSSTT LSL+CC+  S+ TTAD+QLVEIRLRR+SKLVSP SNQ IQQTFPT IS+ALFHF
Sbjct: 1   MSSTTTLSLECCIHSSVATTADEQLVEIRLRRYSKLVSPSSNQIIQQTFPTPISDALFHF 60

Query: 61  PLPELELENPS-LFHDFLLQFLSPADSAAIFHNISSFALQLAAGNLNLNFHLIATVDLLY 120
           PLPELELENP   FHD LLQFLSPADS AIFHNISSFALQLAAGNLNLNFHLIATVDLLY
Sbjct: 61  PLPELELENPPFFFHDLLLQFLSPADSTAIFHNISSFALQLAAGNLNLNFHLIATVDLLY 120

Query: 121 TISINLNLNPPQYSPPVRNGVPASVMERLMNEKYDDGNG 158
           TIS++L+L+PPQYSP VRNG PASV+ERLM+EKYDDGNG
Sbjct: 121 TISVDLDLDPPQYSPLVRNGAPASVIERLMDEKYDDGNG 159

BLAST of CsGy3G042460 vs. NCBI nr
Match: XP_011650219.1 (PREDICTED: RING-H2 finger protein ATL16-like [Cucumis sativus] >KGN63362.1 hypothetical protein Csa_2G432790 [Cucumis sativus])

HSP 1 Score: 116.7 bits (291), Expect = 1.1e-22
Identity = 83/173 (47.98%), Postives = 102/173 (58.96%), Query Frame = 0

Query: 1   MSSTTNLSLDCCVR-----SIPTTADK-QLVEIRLRRFSKLVSPFSNQNIQQTFPTSISN 60
           MSS T  S  C +R     S  T     Q VE+RL  FS+LV   S+Q +QQT P  IS+
Sbjct: 1   MSSPTTFSFRCSIRCNANGSAATNGQPLQFVELRLGHFSQLVLSPSHQILQQTSPILISD 60

Query: 61  ALFHFPLPELELENPSLFHDFLLQFL-----SPADSAAIFHNISSFALQLAAGNLNLNFH 120
            L  FPL ELE + P + H  L +FL     S A   AIF  ISSFA QL AGNLN NFH
Sbjct: 61  TLIRFPLRELE-DPPFISHSSLCRFLSSYNISDAVCDAIFLKISSFAFQLVAGNLNSNFH 120

Query: 121 LIATVDLLYTISINLNLNPPQYSPPVRNGVPASVMERLMNEKYDDGNGGKGWE 163
           +IA +D +YT  +  +L+P + +  VR G P S +ERLM EKY DGNGG+  E
Sbjct: 121 IIAALDFVYTHWV--DLDPAEDAAAVRQGAPRSAIERLMKEKY-DGNGGEEME 169

BLAST of CsGy3G042460 vs. NCBI nr
Match: KGN54851.1 (hypothetical protein Csa_4G551140 [Cucumis sativus])

HSP 1 Score: 110.5 bits (275), Expect = 7.6e-21
Identity = 82/193 (42.49%), Postives = 113/193 (58.55%), Query Frame = 0

Query: 1   MSSTTNLSLDCCVR-----SIPTTADK-QLVEIRLRRFSKLVSPFSNQNIQQTFPTSISN 60
           MS     S  C +R     S+ T     Q V++RLR F +LV   S Q +QQT PT IS+
Sbjct: 1   MSLPITFSFQCSIRRNGKSSLATDGQPLQFVQLRLRHFGQLVHTPSQQILQQTSPTLISD 60

Query: 61  ALFHFPLPELELENPSLFHDFLLQFLSPADSA-----AIFHNISSFALQL---AAGNLNL 120
            L  F L ELE + P + + FL +FLS  D +     AIF+NISSFA Q+   A  N+N+
Sbjct: 61  TLIPFSLWELE-DPPFISYFFLFRFLSSYDISAAVCDAIFYNISSFAGQILLAADSNINV 120

Query: 121 NFHLIATVDLLYTISINLNLNPPQYSPPVRNGVPASVMERLMNEKYDDGNGGKGWEVNAA 180
           NFH+IA VD++YT  +  +L+P + +P VR G   SV+ER+M EKY DGNGG+  E +  
Sbjct: 121 NFHIIADVDIVYTHWV--DLDPAEDAPAVRKGASTSVIERVMKEKY-DGNGGEEKEGDDQ 180

BLAST of CsGy3G042460 vs. NCBI nr
Match: XP_023006826.1 (E3 ubiquitin-protein ligase RNF126-like [Cucurbita maxima])

HSP 1 Score: 95.1 bits (235), Expect = 3.3e-16
Identity = 62/137 (45.26%), Postives = 86/137 (62.77%), Query Frame = 0

Query: 23  QLVEIRLRRFSKLVSPFSNQNIQQTFPTSISNALFHFPLPELELENPSLFHDFLLQFLSP 82
           QL+E+RL   + L+S  S Q +QQT  T I +ALF F L +L+   P L + ++LQFLS 
Sbjct: 31  QLLELRLGHSTHLISRSSRQILQQTPSTPIGDALFPFVLRDLQ-HPPFLSNCYVLQFLSS 90

Query: 83  -----ADSAAIFHNISSFALQLAAGNLNLNFHLIATVDLLYTISINLN-LNPPQYSPPVR 142
                A    I+  ISSFALQLAAGN++LNFH++  VD+   I ++L+     +YSP   
Sbjct: 91  FSIPIAACDIIYEEISSFALQLAAGNMDLNFHIVVEVDVNEMIWVDLDPFLVEEYSPAEM 150

Query: 143 NGVPASVMERLMNEKYD 154
           NG PAS +ERL  +K+D
Sbjct: 151 NGAPASAIERLQRQKFD 166

BLAST of CsGy3G042460 vs. TrEMBL
Match: tr|A0A0A0LHI3|A0A0A0LHI3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G889100 PE=4 SV=1)

HSP 1 Score: 313.5 bits (802), Expect = 3.9e-82
Identity = 159/160 (99.38%), Postives = 160/160 (100.00%), Query Frame = 0

Query: 1   MSSTTNLSLDCCVRSIPTTADKQLVEIRLRRFSKLVSPFSNQNIQQTFPTSISNALFHFP 60
           MSSTTNLSLDCCVRSIPTTADKQLVEIRLRRFSKLVSPFSNQNIQQTFPTSISNALFHFP
Sbjct: 1   MSSTTNLSLDCCVRSIPTTADKQLVEIRLRRFSKLVSPFSNQNIQQTFPTSISNALFHFP 60

Query: 61  LPELELENPSLFHDFLLQFLSPADSAAIFHNISSFALQLAAGNLNLNFHLIATVDLLYTI 120
           LPELELENPSLFHDFLLQFLSPADSAAIFHNISSFALQLAAGNLNLNFHLIATVDLLYTI
Sbjct: 61  LPELELENPSLFHDFLLQFLSPADSAAIFHNISSFALQLAAGNLNLNFHLIATVDLLYTI 120

Query: 121 SINLNLNPPQYSPPVRNGVPASVMERLMNEKYDDGNGGKG 161
           SINLNLNPPQYSPPVRNGVPASVMERLMNEKYDDGNGG+G
Sbjct: 121 SINLNLNPPQYSPPVRNGVPASVMERLMNEKYDDGNGGEG 160

BLAST of CsGy3G042460 vs. TrEMBL
Match: tr|A0A1S3CR16|A0A1S3CR16_CUCME (E3 ubiquitin-protein ligase synoviolin B-like OS=Cucumis melo OX=3656 GN=LOC103503717 PE=4 SV=1)

HSP 1 Score: 254.6 bits (649), Expect = 2.1e-64
Identity = 133/159 (83.65%), Postives = 145/159 (91.19%), Query Frame = 0

Query: 1   MSSTTNLSLDCCVR-SIPTTADKQLVEIRLRRFSKLVSPFSNQNIQQTFPTSISNALFHF 60
           MSSTT LSL+CC+  S+ TTAD+QLVEIRLRR+SKLVSP SNQ IQQTFPT IS+ALFHF
Sbjct: 1   MSSTTTLSLECCIHSSVATTADEQLVEIRLRRYSKLVSPSSNQIIQQTFPTPISDALFHF 60

Query: 61  PLPELELENPS-LFHDFLLQFLSPADSAAIFHNISSFALQLAAGNLNLNFHLIATVDLLY 120
           PLPELELENP   FHD LLQFLSPADS AIFHNISSFALQLAAGNLNLNFHLIATVDLLY
Sbjct: 61  PLPELELENPPFFFHDLLLQFLSPADSTAIFHNISSFALQLAAGNLNLNFHLIATVDLLY 120

Query: 121 TISINLNLNPPQYSPPVRNGVPASVMERLMNEKYDDGNG 158
           TIS++L+L+PPQYSP VRNG PASV+ERLM+EKYDDGNG
Sbjct: 121 TISVDLDLDPPQYSPLVRNGAPASVIERLMDEKYDDGNG 159

BLAST of CsGy3G042460 vs. TrEMBL
Match: tr|A0A0A0LRB0|A0A0A0LRB0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G432790 PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 7.0e-23
Identity = 83/173 (47.98%), Postives = 102/173 (58.96%), Query Frame = 0

Query: 1   MSSTTNLSLDCCVR-----SIPTTADK-QLVEIRLRRFSKLVSPFSNQNIQQTFPTSISN 60
           MSS T  S  C +R     S  T     Q VE+RL  FS+LV   S+Q +QQT P  IS+
Sbjct: 1   MSSPTTFSFRCSIRCNANGSAATNGQPLQFVELRLGHFSQLVLSPSHQILQQTSPILISD 60

Query: 61  ALFHFPLPELELENPSLFHDFLLQFL-----SPADSAAIFHNISSFALQLAAGNLNLNFH 120
            L  FPL ELE + P + H  L +FL     S A   AIF  ISSFA QL AGNLN NFH
Sbjct: 61  TLIRFPLRELE-DPPFISHSSLCRFLSSYNISDAVCDAIFLKISSFAFQLVAGNLNSNFH 120

Query: 121 LIATVDLLYTISINLNLNPPQYSPPVRNGVPASVMERLMNEKYDDGNGGKGWE 163
           +IA +D +YT  +  +L+P + +  VR G P S +ERLM EKY DGNGG+  E
Sbjct: 121 IIAALDFVYTHWV--DLDPAEDAAAVRQGAPRSAIERLMKEKY-DGNGGEEME 169

BLAST of CsGy3G042460 vs. TrEMBL
Match: tr|A0A0A0L3Z2|A0A0A0L3Z2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G551140 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 5.0e-21
Identity = 82/193 (42.49%), Postives = 113/193 (58.55%), Query Frame = 0

Query: 1   MSSTTNLSLDCCVR-----SIPTTADK-QLVEIRLRRFSKLVSPFSNQNIQQTFPTSISN 60
           MS     S  C +R     S+ T     Q V++RLR F +LV   S Q +QQT PT IS+
Sbjct: 1   MSLPITFSFQCSIRRNGKSSLATDGQPLQFVQLRLRHFGQLVHTPSQQILQQTSPTLISD 60

Query: 61  ALFHFPLPELELENPSLFHDFLLQFLSPADSA-----AIFHNISSFALQL---AAGNLNL 120
            L  F L ELE + P + + FL +FLS  D +     AIF+NISSFA Q+   A  N+N+
Sbjct: 61  TLIPFSLWELE-DPPFISYFFLFRFLSSYDISAAVCDAIFYNISSFAGQILLAADSNINV 120

Query: 121 NFHLIATVDLLYTISINLNLNPPQYSPPVRNGVPASVMERLMNEKYDDGNGGKGWEVNAA 180
           NFH+IA VD++YT  +  +L+P + +P VR G   SV+ER+M EKY DGNGG+  E +  
Sbjct: 121 NFHIIADVDIVYTHWV--DLDPAEDAPAVRKGASTSVIERVMKEKY-DGNGGEEKEGDDQ 180

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_011652885.15.9e-8299.38PREDICTED: RING-H2 finger protein ATL66-like [Cucumis sativus] >KGN60202.1 hypot... [more]
XP_008466247.13.2e-6483.65PREDICTED: E3 ubiquitin-protein ligase synoviolin B-like [Cucumis melo][more]
XP_011650219.11.1e-2247.98PREDICTED: RING-H2 finger protein ATL16-like [Cucumis sativus] >KGN63362.1 hypot... [more]
KGN54851.17.6e-2142.49hypothetical protein Csa_4G551140 [Cucumis sativus][more]
XP_023006826.13.3e-1645.26E3 ubiquitin-protein ligase RNF126-like [Cucurbita maxima][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A0A0LHI3|A0A0A0LHI3_CUCSA3.9e-8299.38Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G889100 PE=4 SV=1[more]
tr|A0A1S3CR16|A0A1S3CR16_CUCME2.1e-6483.65E3 ubiquitin-protein ligase synoviolin B-like OS=Cucumis melo OX=3656 GN=LOC1035... [more]
tr|A0A0A0LRB0|A0A0A0LRB0_CUCSA7.0e-2347.98Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G432790 PE=4 SV=1[more]
tr|A0A0A0L3Z2|A0A0A0L3Z2_CUCSA5.0e-2142.49Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G551140 PE=4 SV=1[more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0016874 ligase activity

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy3G042460.1CsGy3G042460.1mRNA


Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 176..195

The following gene(s) are paralogous to this gene:

None