CsGy3G040060 (gene) Cucumber (Gy14) v2

Overview
NameCsGy3G040060
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
DescriptionUnknown Protein
LocationChr3 : 37593804 .. 37596303 (+)
Genome Viewer
Gene Expression
   



Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCACCTCCTTCGAAGCGTCTCCTACAGGTCCAACATCTTGAGATTCAGTACTACACTATTCACCCAACTGCTTAATCAAGTATTAAGCACAAAGCTAGAGAATTGAAATTTCATGTTGTAGAAGACGTTAGCACTTCCTATTGTGAAAGATTACAACTTAAAAGGGCATAAATTGTGCCCTCCCATGTTTCCTTCTCTCCTTACTGCTATAATTTCTCCTTCTAGTGCTATAGTGGAAGGTTTAAACCGAGTTGGGTGCAACATCTAGCTCCTCTGTTGAGAAAGTCGTGAACCCGCCACATGAGGCTTGGTTTCCTATCAATTTGTTATTGTTAGGTTGGTTGTATAATTCAATGTGACCTAAAGTTGTTGTTCAACTAATGGGTTATGATAATGCCAATAGTCTTTGGGAGGCTACTCACACTCTGGTTGGTGTTCAATCTCGAGCTGAGGAAGATTATCTTAGGCAAATCTTTCAGCAAACACGAAAAGGTAATTTTTCAGTGGTTGAATATCTTAAGCTTGTGAAGTTACACTCTGACAACCTACTTAGGTTGGTAGTCCTATTATACCTAGATATCTTGTGTCTCAAAGTTTTTTTTGGTCTTGATGAAGAATATAACCTGGTGGTTGTTGTCATCCAAAATAGAGTGAATATTTTGTGGCTTGATATGCAATCTAAGCTTCTATCGTTTGAAAAGAGATTATAACCTCCTTCAAGAGGTGAAACTCTTCCAATCTAAGCCTAAAGCTTGGCTCACTATCAAAAAGATTAACTGGTCCTTGATTGAACCTACTTAAGTAAAGGAAGCACTTAATACAACTCCATAAAAACGTACTATGGACATTGAGTTTAACGCTCTTCAAGACAATAACACTTGGAAACTTGTTCCATTTACTTATTCAATGAATATTCTTGGTAATAAATTCGCTAGATACAATAACAATAATAGCTTTATTAAACTCAAACTTTTTTAGATAAAAGATATAACATTTAGTTGCTATAAGGTAGTTCTACATTTCTAAGGAGAGAGTACAACTTCATTGTGCTTAGAAATGCTACGAACATGATTGAAAATATTAGGAGACCACAAGTAACAATTATCATAAGATCACATACCTATCTTGATAAGATTGCATACTTATCACTATTAGTCACTAGATATCTGCCTTTAGAGAAATTAACATTAAAACCCTAATCATATAACTTACTTATGCATATGAGAATTACTGTTGTGTCTTCCACGAGAATGAGCAAAGGAAGTTCAAGATATTAAAGTTTTCCTTTTCCAACAAAATTCTTCATTTACCACCATCACCATAAATAACATATTCAAAACCATATGGCTTTAGATATATTAGAAAATTCTTCTCTCTTATTGTAACGTCCTAAGTTTAAGAGGGGGACATGAATGAAACAATATCATATCTGAATGAGAGGGATGTTAAGGACATGAAGTAAGGTTAAGAAACACTTTAAAGGGATTAAAAGTTACTACATATACCAACAAGGTGCACCATCCTTTTTGGTGGTCCTATCATAGAAAATCTATAGTTAAGTGCATGCTTAGCTCAGAACAATTCTATGTTGGATGACCTTATGGACAAAGCATGCTGAAAGAACTCGTGTTGGTTTGTGGGGACAACTTTCACTCTAATAATCCTTTAAGACAAGTAAGAATGATGTTAACATATCATAGAGCATAAAGGAGAATGTTGAGGATTTGAATTCCTTAGACTTGGGGCATTACAGATGATATCATAGAGGAACCTCTCCCAGTAACATGTGGTTTGGAGACGAACTAAGTTGTTGTCAGTCGGTACCAATGTTTTTTATAATGTCATTAACATGTTGACCAATGTGTTGCTCAAGTTTTGCCTTTAATATAAAATCAGCCAACTGTACTTCAACACTACACTAACATATATTATAAAAATTTTAGGAGAGTTACAAAATTACCAAAAAGATAAAATAACACGTGAATAATAATCTAAAAACTACTAACAAAAAAATAAATATATTTGAAACAACAAATTATTTATTGATGAAAATGAGTAGAAATAAAGTTGATTTCTTTTCATAATAATTATTTGAAGAGTGACATATAATCAACTCCATAAGCTCCTAACAAGGAGTTGAACACCAAATTGAGGGTTTAAGCTTACAAACATCATAGGGGCATGCGTGTAGGTTGGAGAAATTGTAAAAGCGAAGCGCTGGATTATCATAGCCAATGCAACTTTAGCCTCGATCAAAGCCAAATGTTGTCCTACACAAATTCTAGGACCCAATCCAAATGGTAGAAATGAAGCAAGATGTTTCCTAGGCTCACTAAATCTCATAGGGTTGAAGTTGTGTGCATCTTCTCCCCAAAGCTCTTTGTCATGGTGGATTGCAACCACTGAAAGTTGTAGTTGTGTGCCTTCCGGAACATCAATGTTTCCTAGTGTTAGTCGTTTCATTGTCCGCCTCATCATCATAATCGCCGGTGGATAA

mRNA sequence

ATGCCACCTCCTTCGAAGCGTCTCCTACAGAAGACGTTAGCACTTCCTATTGTGAAAGATTACAACTTAAAAGGGCATAAATTGTGCCCTCCCATGTTTCCTTCTCTCCTTACTGCTATAATTTCTCCTTCTAGTGCTATAGTGGAAGGTAGTTCTACATTTCTAAGGAGAGAGTACAACTTCATTGTGCTTAGAAATGCTACGAACATGATTGAAAATATTAGGAGACCACAAGTTGGAGAAATTGTAAAAGCGAAGCGCTGGATTATCATAGCCAATGCAACTTTAGCCTCGATCAAAGCCAAATGTTGTCCTACACAAATTCTAGGACCCAATCCAAATGGTAGAAATGAAGCAAGATGTTTCCTAGGCTCACTAAATCTCATAGGGTTGAAGTTGTGTGCATCTTCTCCCCAAAGCTCTTTGTCATGGTGGATTGCAACCACTGAAAGTTGTAGTTGTGTGCCTTCCGGAACATCAATGTTTCCTAGTGTTAGTCGTTTCATTGTCCGCCTCATCATCATAATCGCCGGTGGATAA

Coding sequence (CDS)

ATGCCACCTCCTTCGAAGCGTCTCCTACAGAAGACGTTAGCACTTCCTATTGTGAAAGATTACAACTTAAAAGGGCATAAATTGTGCCCTCCCATGTTTCCTTCTCTCCTTACTGCTATAATTTCTCCTTCTAGTGCTATAGTGGAAGGTAGTTCTACATTTCTAAGGAGAGAGTACAACTTCATTGTGCTTAGAAATGCTACGAACATGATTGAAAATATTAGGAGACCACAAGTTGGAGAAATTGTAAAAGCGAAGCGCTGGATTATCATAGCCAATGCAACTTTAGCCTCGATCAAAGCCAAATGTTGTCCTACACAAATTCTAGGACCCAATCCAAATGGTAGAAATGAAGCAAGATGTTTCCTAGGCTCACTAAATCTCATAGGGTTGAAGTTGTGTGCATCTTCTCCCCAAAGCTCTTTGTCATGGTGGATTGCAACCACTGAAAGTTGTAGTTGTGTGCCTTCCGGAACATCAATGTTTCCTAGTGTTAGTCGTTTCATTGTCCGCCTCATCATCATAATCGCCGGTGGATAA

Protein sequence

MPPPSKRLLQKTLALPIVKDYNLKGHKLCPPMFPSLLTAIISPSSAIVEGSSTFLRREYNFIVLRNATNMIENIRRPQVGEIVKAKRWIIIANATLASIKAKCCPTQILGPNPNGRNEARCFLGSLNLIGLKLCASSPQSSLSWWIATTESCSCVPSGTSMFPSVSRFIVRLIIIIAGG
Homology
[Close]
BLAST of CsGy3G040060 vs. NCBI nr
Match: ERM97989.1 (hypothetical protein AMTR_s00117p00129740 [Amborella trichopoda])

HSP 1 Score: 60.5 bits (145), Expect = 6.9e-06
Identity = 36/77 (46.75%), Postives = 41/77 (53.25%), Query Frame = 0 

Query: 91  IANATLASIKAKCCPTQILGPNPNGRNEARCFLG----SLNLIGLKLCASSPQSSLSWWI 150
           +ANA LAS+ AK  P QILGP PNG+    C       S NL G    ASSPQ S SWWI
Sbjct: 1   MANAILASVNAKFFPMQILGPYPNGKKAKGCLAAFDTPSENLSGRNSSASSPQISRSWWI 60

Query: 151 ATTESCSCVPSGTSMFP 164
            +       P+G S  P
Sbjct: 61  MSIGRTRWTPAGKSRPP 77

[Close]
BLAST of CsGy3G040060 vs. TrEMBL
Match: tr|A0A0A8Y8G8|A0A0A8Y8G8_ARUDO (Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 9.2e-07
Identity = 41/91 (45.05%), Postives = 46/91 (50.55%), Query Frame = 0 

Query: 93  NATLASIKAKCCPTQILGPNPNGRNEARCF----LGSLNLIGLKLCASSPQSSLSWWIAT 152
           NA LAS  AK  P Q  GP PNGRN         + S NL GL  CAS PQ S SWWI +
Sbjct: 3   NAILASSSAKFWPMQTRGPQPNGRNAPGSLDALEIPSENLFGLNSCASLPQISGSWWIKS 62

Query: 153 TESCSCVPSGTSMFPSVSRFIVRLIIIIAGG 180
           T S +  P+G    P      V L   +AGG
Sbjct: 63  TGSSTITPAGYVTPPITISLYVLLENAMAGG 93

[Close]
BLAST of CsGy3G040060 vs. TrEMBL
Match: tr|W1NTQ7|W1NTQ7_AMBTC (Uncharacterized protein OS=Amborella trichopoda OX=13333 GN=AMTR_s00117p00129740 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 4.6e-06
Identity = 36/77 (46.75%), Postives = 41/77 (53.25%), Query Frame = 0 

Query: 91  IANATLASIKAKCCPTQILGPNPNGRNEARCFLG----SLNLIGLKLCASSPQSSLSWWI 150
           +ANA LAS+ AK  P QILGP PNG+    C       S NL G    ASSPQ S SWWI
Sbjct: 1   MANAILASVNAKFFPMQILGPYPNGKKAKGCLAAFDTPSENLSGRNSSASSPQISRSWWI 60

Query: 151 ATTESCSCVPSGTSMFP 164
            +       P+G S  P
Sbjct: 61  MSIGRTRWTPAGKSRPP 77

The following BLAST results are available for this feature:
BLAST of CsGy3G040060 vs. NCBI nr
Match NameE-valueIdentityDescription
ERM97989.16.9e-0646.75hypothetical protein AMTR_s00117p00129740 [Amborella trichopoda][more]
BLAST of CsGy3G040060 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsGy3G040060 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsGy3G040060 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A8Y8G8|A0A0A8Y8G8_ARUDO9.2e-0745.05Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1[more]
tr|W1NTQ7|W1NTQ7_AMBTC4.6e-0646.75Uncharacterized protein OS=Amborella trichopoda OX=13333 GN=AMTR_s00117p00129740... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy3G040060.1CsGy3G040060.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsGy3G040060Cucumber (Gy14) v2cgybcgybB046
CsGy3G040060Cucurbita maxima (Rimu)cgybcmaB287
CsGy3G040060Cucurbita maxima (Rimu)cgybcmaB303
CsGy3G040060Cucurbita maxima (Rimu)cgybcmaB358
CsGy3G040060Cucurbita maxima (Rimu)cgybcmaB420
CsGy3G040060Cucurbita moschata (Rifu)cgybcmoB260
CsGy3G040060Cucurbita moschata (Rifu)cgybcmoB276
CsGy3G040060Cucurbita moschata (Rifu)cgybcmoB330
CsGy3G040060Cucurbita moschata (Rifu)cgybcmoB397
CsGy3G040060Cucurbita pepo (Zucchini)cgybcpeB296
CsGy3G040060Cucurbita pepo (Zucchini)cgybcpeB387
CsGy3G040060Cucurbita pepo (Zucchini)cgybcpeB438
CsGy3G040060Cucurbita pepo (Zucchini)cgybcpeB441
CsGy3G040060Cucumber (Chinese Long) v2cgybcuB102
CsGy3G040060Cucumber (Chinese Long) v2cgybcuB110
CsGy3G040060Bottle gourd (USVL1VR-Ls)cgyblsiB176
CsGy3G040060Bottle gourd (USVL1VR-Ls)cgyblsiB226
CsGy3G040060Melon (DHL92) v3.5.1cgybmeB169
CsGy3G040060Melon (DHL92) v3.5.1cgybmeB185
CsGy3G040060Melon (DHL92) v3.6.1cgybmedB169
CsGy3G040060Melon (DHL92) v3.6.1cgybmedB186
CsGy3G040060Watermelon (Charleston Gray)cgybwcgB215
CsGy3G040060Watermelon (Charleston Gray)cgybwcgB245
CsGy3G040060Watermelon (97103) v1cgybwmB197
CsGy3G040060Watermelon (97103) v1cgybwmB230
CsGy3G040060Wild cucumber (PI 183967)cgybcpiB101
CsGy3G040060Wild cucumber (PI 183967)cgybcpiB111
CsGy3G040060Silver-seed gourdcarcgybB0111
CsGy3G040060Silver-seed gourdcarcgybB0196
CsGy3G040060Silver-seed gourdcarcgybB0934
CsGy3G040060Silver-seed gourdcarcgybB0966
CsGy3G040060Cucumber (Chinese Long) v3cgybcucB110
CsGy3G040060Cucumber (Chinese Long) v3cgybcucB117
CsGy3G040060Watermelon (97103) v2cgybwmbB207
CsGy3G040060Watermelon (97103) v2cgybwmbB238
CsGy3G040060Wax gourdcgybwgoB216