CsGy3G039510 (gene) Cucumber (Gy14) v2

NameCsGy3G039510
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
DescriptionDefensin-like protein 19
LocationChr3 : 37204525 .. 37205342 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CACAAATTTCATCAAGAATTCAAATAATTAGAAATGGGCAAGGTTGTGGGTAACTCTGCCAAGATGGTTGTTTTGCTTTTTCTTTTCACTCTCATGCTTTCCATCAATGGTAATTAATTACACCACTATTTATCAACCCTTTCCCCCACTCTTAATTTTCTTATCTCAAACAAAATTTTGGTGACAATAAAATTTTTAAATTATTGTTAAAAACAAACCACATAAGAAAGTACACATAATTAAAAAGAAACTTATCTAATTTGTATACAGCATAATTTTTGTTTTTGTTTTCTTTTTCTCTTTTGTGGCTCACGGTGACCACAGAAAAGGGAGGGGGTGTGGAGGCAATGTTGTGTAAGGAGCGGAGCAAGACGTGGTCGGGATATTGCGCGATCACGAGCCATTGCGACAAACAATGCAAGAATTGGGAAGGTGCAGATCATGGAGCTTGCCACGATCACGTTCCTGGAAAAGCTTGTTATTGCTACTACAACTGTTGAAAACCATGCAATAATTCCTCATGAATTTTGATGATGTTAATCTCCATCTCGACATCATTCCCCTTTTTTTAAAAAAATAAAAACTTTGTGTTTTCTTATGTGTGTGTGAAGGATCTCTATATGAATTAATGTTTTTAAGTGTGAGAAGTCTATGTAGTTAGAAAAATGTGTATTGTGGTTTTTGTGATAAATATGCTGTTATTTATCTTTTTAGCAGCTTGTTTGTGTGTCTGTCTTCCTCTTCATATCAAAATAAAATGGCCTTGCCTGTTGTTTCCCACTAAAACAAGATGGTTTACATCATAAATGTATATGCAC

mRNA sequence

CACAAATTTCATCAAGAATTCAAATAATTAGAAATGGGCAAGGTTGTGGGTAACTCTGCCAAGATGGTTGTTTTGCTTTTTCTTTTCACTCTCATGCTTTCCATCAATGAAAAGGGAGGGGGTGTGGAGGCAATGTTGTGTAAGGAGCGGAGCAAGACGTGGTCGGGATATTGCGCGATCACGAGCCATTGCGACAAACAATGCAAGAATTGGGAAGGTGCAGATCATGGAGCTTGCCACGATCACGTTCCTGGAAAAGCTTGTTATTGCTACTACAACTGTTGAAAACCATGCAATAATTCCTCATGAATTTTGATGATGTTAATCTCCATCTCGACATCATTCCCCTTTTTTTAAAAAAATAAAAACTTTGTGTTTTCTTATGTGTGTGTGAAGGATCTCTATATGAATTAATGTTTTTAAGTGTGAGAAGTCTATGTAGTTAGAAAAATGTGTATTGTGGTTTTTGTGATAAATATGCTGTTATTTATCTTTTTAGCAGCTTGTTTGTGTGTCTGTCTTCCTCTTCATATCAAAATAAAATGGCCTTGCCTGTTGTTTCCCACTAAAACAAGATGGTTTACATCATAAATGTATATGCAC

Coding sequence (CDS)

ATGGGCAAGGTTGTGGGTAACTCTGCCAAGATGGTTGTTTTGCTTTTTCTTTTCACTCTCATGCTTTCCATCAATGAAAAGGGAGGGGGTGTGGAGGCAATGTTGTGTAAGGAGCGGAGCAAGACGTGGTCGGGATATTGCGCGATCACGAGCCATTGCGACAAACAATGCAAGAATTGGGAAGGTGCAGATCATGGAGCTTGCCACGATCACGTTCCTGGAAAAGCTTGTTATTGCTACTACAACTGTTGA

Protein sequence

MGKVVGNSAKMVVLLFLFTLMLSINEKGGGVEAMLCKERSKTWSGYCAITSHCDKQCKNWEGADHGACHDHVPGKACYCYYNC
BLAST of CsGy3G039510 vs. NCBI nr
Match: XP_022139709.1 (defensin-like protein 1 [Momordica charantia])

HSP 1 Score: 116.3 bits (290), Expect = 4.9e-23
Identity = 53/83 (63.86%), Postives = 62/83 (74.70%), Query Frame = 0

Query: 1  MGKVVGNSAKMVVLLFLFTLMLSINEKGGGVEAMLCKERSKTWSGYCAITSHCDKQCKNW 60
          MGK+V      V LL L  LMLSINE    VEA +C++RSKTWSG+C  TSHCD+QCKNW
Sbjct: 1  MGKMV------VALLLLLALMLSINENRVAVEAKICEKRSKTWSGWCGNTSHCDRQCKNW 60

Query: 61 EGADHGACHDHVPGKACYCYYNC 84
          EGA HGACH   PG+AC+CY+NC
Sbjct: 61 EGAKHGACHAQFPGRACFCYFNC 77

BLAST of CsGy3G039510 vs. NCBI nr
Match: XP_022976615.1 (defensin-like protein 1 [Cucurbita maxima])

HSP 1 Score: 103.2 bits (256), Expect = 4.3e-19
Identity = 50/84 (59.52%), Postives = 58/84 (69.05%), Query Frame = 0

Query: 1  MGKVVGNSAKM-VVLLFLFTLMLSINEKGGGVEAMLCKERSKTWSGYCAITSHCDKQCKN 60
          M K + NSAKM V  LFLF LMLS+NEK G VEA +C+ RSKTWSG+C  TSH       
Sbjct: 1  MAKALANSAKMAVAFLFLFALMLSMNEKLGVVEAKVCERRSKTWSGWCGNTSHXXXXXXX 60

Query: 61 WEGADHGACHDHVPGKACYCYYNC 84
            GA HGACH   PG+AC+CY+NC
Sbjct: 61 XXGAKHGACHAQFPGRACFCYFNC 84

BLAST of CsGy3G039510 vs. NCBI nr
Match: XP_023535147.1 (defensin-like protein 1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 101.3 bits (251), Expect = 1.6e-18
Identity = 49/84 (58.33%), Postives = 57/84 (67.86%), Query Frame = 0

Query: 1  MGKVVGNSAKM-VVLLFLFTLMLSINEKGGGVEAMLCKERSKTWSGYCAITSHCDKQCKN 60
          M K + NSAKM V  +FLF LMLS NEK G VEA +C+ RSKTWSG+C  TSH       
Sbjct: 1  MAKALANSAKMAVAFVFLFALMLSTNEKLGVVEAKVCERRSKTWSGWCGNTSHXXXXXXX 60

Query: 61 WEGADHGACHDHVPGKACYCYYNC 84
            GA HGACH   PG+AC+CY+NC
Sbjct: 61 XXGAKHGACHAQFPGRACFCYFNC 84

BLAST of CsGy3G039510 vs. NCBI nr
Match: XP_004150110.1 (PREDICTED: defensin-like protein 1 [Cucumis sativus] >KGN59894.1 hypothetical protein Csa_3G851940 [Cucumis sativus])

HSP 1 Score: 99.4 bits (246), Expect = 6.2e-18
Identity = 49/84 (58.33%), Postives = 57/84 (67.86%), Query Frame = 0

Query: 1  MGKVVGNSAKMVV-LLFLFTLMLSINEKGGGVEAMLCKERSKTWSGYCAITSHCDKQCKN 60
          M KVVGNSAKM+V LLFL  LMLS+NEK G VEA +C+ RSKTWSG+C  T         
Sbjct: 1  MAKVVGNSAKMIVALLFLLALMLSMNEKQGVVEAKVCERRSKTWSGWCGNTXXXXXXXXX 60

Query: 61 WEGADHGACHDHVPGKACYCYYNC 84
               HGACH   PG+AC+CY+NC
Sbjct: 61 XXXXTHGACHAQFPGRACFCYFNC 84

BLAST of CsGy3G039510 vs. NCBI nr
Match: XP_022935763.1 (defensin-like protein 1 [Cucurbita moschata])

HSP 1 Score: 97.4 bits (241), Expect = 2.4e-17
Identity = 47/84 (55.95%), Postives = 57/84 (67.86%), Query Frame = 0

Query: 1  MGKVVGNSAKM-VVLLFLFTLMLSINEKGGGVEAMLCKERSKTWSGYCAITSHCDKQCKN 60
          M K + +SAKM V  LFLF LMLS+N + G VEA +C+ RSKTWSG+C  TSH       
Sbjct: 1  MAKALASSAKMAVAFLFLFALMLSMNGRLGVVEAKVCERRSKTWSGWCGNTSHXXXXXXX 60

Query: 61 WEGADHGACHDHVPGKACYCYYNC 84
            GA HGACH   PG+AC+CY+NC
Sbjct: 61 XXGAKHGACHAQFPGRACFCYFNC 84

BLAST of CsGy3G039510 vs. TAIR10
Match: AT1G19610.1 (Arabidopsis defensin-like protein)

HSP 1 Score: 85.1 bits (209), Expect = 2.2e-17
Identity = 35/76 (46.05%), Postives = 48/76 (63.16%), Query Frame = 0

Query: 8  SAKMVVLLFLFTLMLSINEKGGGVEAMLCKERSKTWSGYCAITSHCDKQCKNWEGADHGA 67
          S+  ++L    ++ L  + +   VE  +C+ RSKTW+G+C  T  CD QCK WE A HGA
Sbjct: 3  SSYTLMLFLCLSIFLIASTEMMAVEGRICERRSKTWTGFCGNTRGCDSQCKRWERASHGA 62

Query: 68 CHDHVPGKACYCYYNC 84
          CH   PG AC+CY+NC
Sbjct: 63 CHAQFPGFACFCYFNC 78

BLAST of CsGy3G039510 vs. Swiss-Prot
Match: sp|P82787|DEF19_ARATH (Defensin-like protein 19 OS=Arabidopsis thaliana OX=3702 GN=PDF1.4 PE=3 SV=2)

HSP 1 Score: 85.1 bits (209), Expect = 4.0e-16
Identity = 35/76 (46.05%), Postives = 48/76 (63.16%), Query Frame = 0

Query: 8  SAKMVVLLFLFTLMLSINEKGGGVEAMLCKERSKTWSGYCAITSHCDKQCKNWEGADHGA 67
          S+  ++L    ++ L  + +   VE  +C+ RSKTW+G+C  T  CD QCK WE A HGA
Sbjct: 3  SSYTLMLFLCLSIFLIASTEMMAVEGRICERRSKTWTGFCGNTRGCDSQCKRWERASHGA 62

Query: 68 CHDHVPGKACYCYYNC 84
          CH   PG AC+CY+NC
Sbjct: 63 CHAQFPGFACFCYFNC 78

BLAST of CsGy3G039510 vs. Swiss-Prot
Match: sp|P0C8Y4|DEF1_DAHME (Defensin-like protein 1 OS=Dahlia merckii OX=43367 PE=1 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 1.1e-13
Identity = 30/49 (61.22%), Postives = 35/49 (71.43%), Query Frame = 0

Query: 35 LCKERSKTWSGYCAITSHCDKQCKNWEGADHGACHDHVPGKACYCYYNC 84
          LC++ SKTWSG C  T HCD QCK+WEGA HGACH       C+CY+NC
Sbjct: 2  LCEKASKTWSGNCGNTGHCDNQCKSWEGAAHGACHVRNGKHMCFCYFNC 50

BLAST of CsGy3G039510 vs. Swiss-Prot
Match: sp|Q7M1F3|DEF1_AESHI (Defensin-like protein 1 OS=Aesculus hippocastanum OX=43364 PE=1 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 1.6e-12
Identity = 30/50 (60.00%), Postives = 36/50 (72.00%), Query Frame = 0

Query: 35 LCKER-SKTWSGYCAITSHCDKQCKNWEGADHGACHDHVPGKACYCYYNC 84
          LC ER S+TWSG C  T+HCDKQC++WE A HGACH       C+CY+NC
Sbjct: 1  LCNERPSQTWSGNCGNTAHCDKQCQDWEKASHGACHKRENHWKCFCYFNC 50

BLAST of CsGy3G039510 vs. Swiss-Prot
Match: sp|Q7M1F2|DEF1_CLITE (Defensin-like protein 1 OS=Clitoria ternatea OX=43366 PE=1 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 1.3e-11
Identity = 28/49 (57.14%), Postives = 33/49 (67.35%), Query Frame = 0

Query: 35 LCKERSKTWSGYCAITSHCDKQCKNWEGADHGACHDHVPGKACYCYYNC 84
          LC+  S TW+G C  T HCD QC+NWE A HGACH     K C+CY+NC
Sbjct: 2  LCERASLTWTGNCGNTGHCDTQCRNWESAKHGACHKRGNWK-CFCYFNC 49

BLAST of CsGy3G039510 vs. Swiss-Prot
Match: sp|P22357|SF18_HELAN (Anther-specific protein SF18 (Fragment) OS=Helianthus annuus OX=4232 PE=2 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 3.8e-11
Identity = 26/53 (49.06%), Postives = 34/53 (64.15%), Query Frame = 0

Query: 31 VEAMLCKERSKTWSGYCAITSHCDKQCKNWEGADHGACHDHVPGKACYCYYNC 84
          V   +C++ SKTW G C  T  CDK+C +WEGA HGACH       C+CY++C
Sbjct: 13 VNGKICEKPSKTWFGNCKDTDKCDKRCIDWEGAKHGACHQREAKHMCFCYFDC 65

BLAST of CsGy3G039510 vs. TrEMBL
Match: tr|A0A0A0LFX9|A0A0A0LFX9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G851940 PE=3 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 4.1e-18
Identity = 49/84 (58.33%), Postives = 57/84 (67.86%), Query Frame = 0

Query: 1  MGKVVGNSAKMVV-LLFLFTLMLSINEKGGGVEAMLCKERSKTWSGYCAITSHCDKQCKN 60
          M KVVGNSAKM+V LLFL  LMLS+NEK G VEA +C+ RSKTWSG+C  T         
Sbjct: 1  MAKVVGNSAKMIVALLFLLALMLSMNEKQGVVEAKVCERRSKTWSGWCGNTXXXXXXXXX 60

Query: 61 WEGADHGACHDHVPGKACYCYYNC 84
               HGACH   PG+AC+CY+NC
Sbjct: 61 XXXXTHGACHAQFPGRACFCYFNC 84

BLAST of CsGy3G039510 vs. TrEMBL
Match: tr|A0A1S3BZX7|A0A1S3BZX7_CUCME (defensin-like protein 1 OS=Cucumis melo OX=3656 GN=LOC103495015 PE=3 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 7.8e-17
Identity = 47/84 (55.95%), Postives = 55/84 (65.48%), Query Frame = 0

Query: 1  MGKVVGNSAKMVV-LLFLFTLMLSINEKGGGVEAMLCKERSKTWSGYCAITSHCDKQCKN 60
          M KVVGNSAKM+V  LFL  L LS+NEK G VEA +C+ RSKTWSG+C            
Sbjct: 1  MAKVVGNSAKMIVAFLFLLALTLSMNEKQGVVEAKVCERRSKTWSGWCGDXXXXXXXXXX 60

Query: 61 WEGADHGACHDHVPGKACYCYYNC 84
             A HGACH   PG+AC+CY+NC
Sbjct: 61 XXXAKHGACHAQFPGRACFCYFNC 84

BLAST of CsGy3G039510 vs. TrEMBL
Match: tr|A0A2P6PYU2|A0A2P6PYU2_ROSCH (Putative defensin, plant OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr6g0301471 PE=3 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 5.0e-16
Identity = 40/83 (48.19%), Postives = 57/83 (68.67%), Query Frame = 0

Query: 1  MGKVVGNSAKMVVLLFLFTLMLSINEKGGGVEAMLCKERSKTWSGYCAITSHCDKQCKNW 60
          M K++G+   + ++LFL   +L  + + G VEA +C+ RSKTW+G C  T +C +QC+NW
Sbjct: 1  MAKLLGHHL-VYLILFLSVFLLFASTEMGMVEARICQRRSKTWTGLCVNTGNCHRQCRNW 60

Query: 61 EGADHGACHDHVPGKACYCYYNC 84
          EGA  GACH   PG AC+CY+NC
Sbjct: 61 EGAQRGACHAQFPGFACFCYFNC 82

BLAST of CsGy3G039510 vs. TrEMBL
Match: tr|A0A1R3HZ61|A0A1R3HZ61_9ROSI (Knottin OS=Corchorus olitorius OX=93759 GN=COLO4_25964 PE=3 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 8.6e-16
Identity = 42/83 (50.60%), Postives = 57/83 (68.67%), Query Frame = 0

Query: 1  MGKVVGNSAKMVVLLFLFTLMLSINEKGGGVEAMLCKERSKTWSGYCAITSHCDKQCKNW 60
          M K + + A  + LL LF L+ + NE     EA +C++RS+TWSG+C  +SHCD+QCKNW
Sbjct: 1  MAKSLSSFATFLALLCLFFLLSTPNEM-KMAEAKICEKRSQTWSGWCGNSSHCDRQCKNW 60

Query: 61 EGADHGACHDHVPGKACYCYYNC 84
          E A HG+CH    G AC+CY+NC
Sbjct: 61 ENARHGSCHADGLGWACFCYFNC 82

BLAST of CsGy3G039510 vs. TrEMBL
Match: tr|A5AHS9|A5AHS9_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_040160 PE=3 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 3.3e-15
Identity = 37/70 (52.86%), Postives = 49/70 (70.00%), Query Frame = 0

Query: 14 LLFLFTLMLSINEKGGGVEAMLCKERSKTWSGYCAITSHCDKQCKNWEGADHGACHDHVP 73
          L FL    L ++ +   +EA +C+  SKTWSG+C  + +CD+QCKNWEGA HGACH   P
Sbjct: 13 LSFLTLFALLVSTEMVMLEAKVCQRPSKTWSGFCGSSKNCDRQCKNWEGAKHGACHAKFP 72

Query: 74 GKACYCYYNC 84
          G AC+CY+NC
Sbjct: 73 GVACFCYFNC 82

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022139709.14.9e-2363.86defensin-like protein 1 [Momordica charantia][more]
XP_022976615.14.3e-1959.52defensin-like protein 1 [Cucurbita maxima][more]
XP_023535147.11.6e-1858.33defensin-like protein 1 [Cucurbita pepo subsp. pepo][more]
XP_004150110.16.2e-1858.33PREDICTED: defensin-like protein 1 [Cucumis sativus] >KGN59894.1 hypothetical pr... [more]
XP_022935763.12.4e-1755.95defensin-like protein 1 [Cucurbita moschata][more]
Match NameE-valueIdentityDescription
AT1G19610.12.2e-1746.05Arabidopsis defensin-like protein[more]
Match NameE-valueIdentityDescription
sp|P82787|DEF19_ARATH4.0e-1646.05Defensin-like protein 19 OS=Arabidopsis thaliana OX=3702 GN=PDF1.4 PE=3 SV=2[more]
sp|P0C8Y4|DEF1_DAHME1.1e-1361.22Defensin-like protein 1 OS=Dahlia merckii OX=43367 PE=1 SV=1[more]
sp|Q7M1F3|DEF1_AESHI1.6e-1260.00Defensin-like protein 1 OS=Aesculus hippocastanum OX=43364 PE=1 SV=1[more]
sp|Q7M1F2|DEF1_CLITE1.3e-1157.14Defensin-like protein 1 OS=Clitoria ternatea OX=43366 PE=1 SV=1[more]
sp|P22357|SF18_HELAN3.8e-1149.06Anther-specific protein SF18 (Fragment) OS=Helianthus annuus OX=4232 PE=2 SV=1[more]
Match NameE-valueIdentityDescription
tr|A0A0A0LFX9|A0A0A0LFX9_CUCSA4.1e-1858.33Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G851940 PE=3 SV=1[more]
tr|A0A1S3BZX7|A0A1S3BZX7_CUCME7.8e-1755.95defensin-like protein 1 OS=Cucumis melo OX=3656 GN=LOC103495015 PE=3 SV=1[more]
tr|A0A2P6PYU2|A0A2P6PYU2_ROSCH5.0e-1648.19Putative defensin, plant OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr6g0301471 PE=... [more]
tr|A0A1R3HZ61|A0A1R3HZ61_9ROSI8.6e-1650.60Knottin OS=Corchorus olitorius OX=93759 GN=COLO4_25964 PE=3 SV=1[more]
tr|A5AHS9|A5AHS9_VITVI3.3e-1552.86Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_040160 PE=3 SV=1[more]
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006952defense response
Vocabulary: INTERPRO
TermDefinition
IPR036574Scorpion_toxin-like_sf
IPR003614Scorpion_toxin-like
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006952 defense response
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy3G039510.1CsGy3G039510.1mRNA


Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003614Knottin, scorpion toxin-likeSMARTSM00505gth_4coord: 35..83
e-value: 2.5E-11
score: 53.7
IPR003614Knottin, scorpion toxin-likeCDDcd00107Knot1coord: 45..80
e-value: 5.47785E-4
score: 32.322
NoneNo IPR availablePFAMPF00304Gamma-thionincoord: 35..83
e-value: 1.6E-10
score: 41.0
NoneNo IPR availablePANTHERPTHR33147:SF4DEFENSIN-LIKE PROTEIN 13-RELATEDcoord: 10..83
NoneNo IPR availablePANTHERPTHR33147FAMILY NOT NAMEDcoord: 10..83
IPR036574Knottin, scorpion toxin-like superfamilyGENE3DG3DSA:3.30.30.10coord: 34..83
e-value: 2.0E-19
score: 71.5
IPR036574Knottin, scorpion toxin-like superfamilySUPERFAMILYSSF57095Scorpion toxin-likecoord: 35..83