CsGy3G038410 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy3G038410
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	UPF0664 stress-induced protein C29B12.11c
Location	Chr3 : 36093105 .. 36094041 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCCTTTGGCTGCCTGGCCTTAATGGTACTCTCACGCAATCTTTGCGGAAAGGCGGCACTGTTAAAACACATTGATGTCTTTGAATTCTCACGGCATCACCTTGAAGCAACTGAAGAATAATCCTATTATTGAGTCCTTACGACCTTACCTTGGATTAATATATCCTCTTTTCATTATGTGTCTATATTCTTTAGTCCTAAATAGCAATCGGACTGCATTATTCTATTTGACATTTCTTGCATTGCAATCTAATGTTTTGCTTGTTGCTTTTGCAGCTCTATGTTCGTGACGAGAAATTTAACCAGCCAATATTTTTCTGCAACAATATATCTGGATTAGTTGAACCTGTAAGCATGCCAACTGTTAGACAACATCTTGTTTAGTATGTCCGAGTCCTACTTTAGCTGCCTATTTAATACCTTATTACAGGTGGTGCCTGAAGACCAGCACAGGGCTCTCTACTCAACTCACTCATTTAAGATTTTGTTCAAGGAAGGGGGATGCGGTACTTTTGTGCCACTCTTCTTCAACCTGCTGTCTTCAGTGAGGCAATACAATCAACATATGAATGCAGGTCCTCGAGTGGATCCATTGCAGGCAGCACAAACTCCTGTCGATGAAATGATGAGACATGCGTACGTAATGTTGATTTTAGTCCAATTTTGTTTCATTGGAAAGTTGGAATTTGTCATTTGATTATGCTCTTGCCGTTAAACTTGCAGATATGTCGATCCAAATGATCCAACCAAAATCTTCTTACAGCAGCCAGCAACGGAGTCCCAGTTAAGGAGGCGAACATACCAATCCCAACCAGCTGAAAATGCAATGTGAAGTTGGTTGAAAAACTATCTCATACTGTAGATTTGTTCCTTTGTTATTATCTACAAGAAGTGAGGGGCTTGATGATGCAGCGAATGAAGACTTGTACAGTTGA

mRNA sequence

ATGTCCTTTGGCTGCCTGGCCTTAATGCTCTATGTTCGTGACGAGAAATTTAACCAGCCAATATTTTTCTGCAACAATATATCTGGATTAGTTGAACCTGTGGTGCCTGAAGACCAGCACAGGGCTCTCTACTCAACTCACTCATTTAAGATTTTGTTCAAGGAAGGGGGATGCGGTACTTTTGTGCCACTCTTCTTCAACCTGCTGTCTTCAGTGAGGCAATACAATCAACATATGAATGCAGGTCCTCGAGTGGATCCATTGCAGGCAGCACAAACTCCTGTCGATGAAATGATGAGACATGCATATGTCGATCCAAATGATCCAACCAAAATCTTCTTACAGCAGCCAGCAACGGAGTCCCAATTTGTTCCTTTGTTATTATCTACAAGAAGTGAGGGGCTTGATGATGCAGCGAATGAAGACTTGTACAGTTGA

Coding sequence (CDS)

ATGTCCTTTGGCTGCCTGGCCTTAATGCTCTATGTTCGTGACGAGAAATTTAACCAGCCAATATTTTTCTGCAACAATATATCTGGATTAGTTGAACCTGTGGTGCCTGAAGACCAGCACAGGGCTCTCTACTCAACTCACTCATTTAAGATTTTGTTCAAGGAAGGGGGATGCGGTACTTTTGTGCCACTCTTCTTCAACCTGCTGTCTTCAGTGAGGCAATACAATCAACATATGAATGCAGGTCCTCGAGTGGATCCATTGCAGGCAGCACAAACTCCTGTCGATGAAATGATGAGACATGCATATGTCGATCCAAATGATCCAACCAAAATCTTCTTACAGCAGCCAGCAACGGAGTCCCAATTTGTTCCTTTGTTATTATCTACAAGAAGTGAGGGGCTTGATGATGCAGCGAATGAAGACTTGTACAGTTGA

Protein sequence

MSFGCLALMLYVRDEKFNQPIFFCNNISGLVEPVVPEDQHRALYSTHSFKILFKEGGCGTFVPLFFNLLSSVRQYNQHMNAGPRVDPLQAAQTPVDEMMRHAYVDPNDPTKIFLQQPATESQFVPLLLSTRSEGLDDAANEDLYS

Homology

[Close]

BLAST of CsGy3G038410 vs. NCBI nr
Match: XP_004141150.1 (PREDICTED: uncharacterized protein LOC101208147 [Cucumis sativus] >KGN59776.1 hypothetical protein Csa_3G845430 [Cucumis sativus])

HSP 1 Score: 242.7 bits (618), Expect = 7.9e-61
Identity = 113/114 (99.12%), Postives = 114/114 (100.00%), Query Frame = 0


Query: 9   MLYVRDEKFNQPIFFCNNISGLVEPVVPEDQHRALYSTHSFKILFKEGGCGTFVPLFFNL 68
           +LYVRDEKFNQPIFFCNNISGLVEPVVPEDQHRALYSTHSFKILFKEGGCGTFVPLFFNL
Sbjct: 74  LLYVRDEKFNQPIFFCNNISGLVEPVVPEDQHRALYSTHSFKILFKEGGCGTFVPLFFNL 133

Query: 69  LSSVRQYNQHMNAGPRVDPLQAAQTPVDEMMRHAYVDPNDPTKIFLQQPATESQ 123
           LSSVRQYNQHMNAGPRVDPLQAAQTPVDEMMRHAYVDPNDPTKIFLQQPATESQ
Sbjct: 134 LSSVRQYNQHMNAGPRVDPLQAAQTPVDEMMRHAYVDPNDPTKIFLQQPATESQ 187

[Close]

BLAST of CsGy3G038410 vs. NCBI nr
Match: XP_008465172.1 (PREDICTED: uncharacterized protein LOC103502837 [Cucumis melo])

HSP 1 Score: 241.1 bits (614), Expect = 2.3e-60
Identity = 112/114 (98.25%), Postives = 113/114 (99.12%), Query Frame = 0


Query: 9   MLYVRDEKFNQPIFFCNNISGLVEPVVPEDQHRALYSTHSFKILFKEGGCGTFVPLFFNL 68
           +LYVRDEKFNQPIFFCNNISGLVEPVVPEDQHRALYSTHSFKILFKEGGCGTFVPLFFNL
Sbjct: 74  LLYVRDEKFNQPIFFCNNISGLVEPVVPEDQHRALYSTHSFKILFKEGGCGTFVPLFFNL 133

Query: 69  LSSVRQYNQHMNAGPRVDPLQAAQTPVDEMMRHAYVDPNDPTKIFLQQPATESQ 123
           LSSVRQYNQHMNAGPRVDPLQAAQTPVDEMMRHAYVDPNDPTKIFLQQP TESQ
Sbjct: 134 LSSVRQYNQHMNAGPRVDPLQAAQTPVDEMMRHAYVDPNDPTKIFLQQPTTESQ 187

[Close]

BLAST of CsGy3G038410 vs. NCBI nr
Match: XP_022934071.1 (uncharacterized protein LOC111441354 [Cucurbita moschata])

HSP 1 Score: 234.6 bits (597), Expect = 2.2e-58
Identity = 108/114 (94.74%), Postives = 111/114 (97.37%), Query Frame = 0


Query: 9   MLYVRDEKFNQPIFFCNNISGLVEPVVPEDQHRALYSTHSFKILFKEGGCGTFVPLFFNL 68
           +LYV DEKFNQPIFFCNNISGLVEPVVPEDQHRALYSTHSFKILFKEGGCGTFVPLFFNL
Sbjct: 74  LLYVHDEKFNQPIFFCNNISGLVEPVVPEDQHRALYSTHSFKILFKEGGCGTFVPLFFNL 133

Query: 69  LSSVRQYNQHMNAGPRVDPLQAAQTPVDEMMRHAYVDPNDPTKIFLQQPATESQ 123
           LSSVRQYNQHMNAGP+VDPLQAAQTPVDEMMRHAYVDPNDPT+IFLQQP  ESQ
Sbjct: 134 LSSVRQYNQHMNAGPQVDPLQAAQTPVDEMMRHAYVDPNDPTRIFLQQPTAESQ 187

[Close]

BLAST of CsGy3G038410 vs. NCBI nr
Match: XP_022983649.1 (uncharacterized protein LOC111482201 [Cucurbita maxima] >XP_023526417.1 uncharacterized protein LOC111789925 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 234.6 bits (597), Expect = 2.2e-58
Identity = 108/114 (94.74%), Postives = 111/114 (97.37%), Query Frame = 0


Query: 9   MLYVRDEKFNQPIFFCNNISGLVEPVVPEDQHRALYSTHSFKILFKEGGCGTFVPLFFNL 68
           +LYV DEKFNQPIFFCNNISGLVEPVVPEDQHRALYSTHSFKILFKEGGCGTFVPLFFNL
Sbjct: 74  LLYVHDEKFNQPIFFCNNISGLVEPVVPEDQHRALYSTHSFKILFKEGGCGTFVPLFFNL 133

Query: 69  LSSVRQYNQHMNAGPRVDPLQAAQTPVDEMMRHAYVDPNDPTKIFLQQPATESQ 123
           LSSVRQYNQHMNAGP+VDPLQAAQTPVDEMMRHAYVDPNDPT+IFLQQP  ESQ
Sbjct: 134 LSSVRQYNQHMNAGPQVDPLQAAQTPVDEMMRHAYVDPNDPTRIFLQQPTAESQ 187

[Close]

BLAST of CsGy3G038410 vs. NCBI nr
Match: XP_022152415.1 (UPF0664 stress-induced protein C29B12.11c [Momordica charantia])

HSP 1 Score: 230.3 bits (586), Expect = 4.1e-57
Identity = 106/114 (92.98%), Postives = 110/114 (96.49%), Query Frame = 0


Query: 9   MLYVRDEKFNQPIFFCNNISGLVEPVVPEDQHRALYSTHSFKILFKEGGCGTFVPLFFNL 68
           +L+V DEKFNQPIF CNNISG VEPVVPEDQHRALYSTHSFKILFKEGGCGTFVPLFFNL
Sbjct: 74  LLFVHDEKFNQPIFHCNNISGFVEPVVPEDQHRALYSTHSFKILFKEGGCGTFVPLFFNL 133

Query: 69  LSSVRQYNQHMNAGPRVDPLQAAQTPVDEMMRHAYVDPNDPTKIFLQQPATESQ 123
           LSSVRQY+QHMNAGPRVDPLQAAQTPVDEMMRHAYVDPNDPT+IFLQQP TESQ
Sbjct: 134 LSSVRQYSQHMNAGPRVDPLQAAQTPVDEMMRHAYVDPNDPTRIFLQQPTTESQ 187

[Close]

BLAST of CsGy3G038410 vs. TAIR10
Match: AT5G11680.1 (FUNCTIONS IN: molecular_function unknown)

HSP 1 Score: 200.7 bits (509), Expect = 6.3e-52
Identity = 94/121 (77.69%), Postives = 104/121 (85.95%), Query Frame = 0


Query: 9   MLYVRDEKFNQPIFFCNNISGLVEPVVPEDQHRALYSTHSFKILFKEGGCGTFVPLFFNL 68
           +LY+  EKFNQPIF CNNI+G VEPVVPE++HRALYSTHSFKILFKEGGCGTFVPLF NL
Sbjct: 74  LLYIHAEKFNQPIFHCNNIAGQVEPVVPENEHRALYSTHSFKILFKEGGCGTFVPLFLNL 133

Query: 69  LSSVRQYNQHMN-------AGPRVDPLQAAQTPVDEMMRHAYVDPNDPTKIFLQQPATES 123
           +SSVRQYN+ M        A P VDPLQAAQTPVDEMMRHAYVDPNDPT+I+LQQP+ ES
Sbjct: 134 ISSVRQYNRQMQQAAEAAAAAPHVDPLQAAQTPVDEMMRHAYVDPNDPTRIYLQQPSGES 193

[Close]

BLAST of CsGy3G038410 vs. TrEMBL
Match: tr|A0A0A0LI97|A0A0A0LI97_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G845430 PE=4 SV=1)

HSP 1 Score: 242.7 bits (618), Expect = 5.3e-61
Identity = 113/114 (99.12%), Postives = 114/114 (100.00%), Query Frame = 0


Query: 9   MLYVRDEKFNQPIFFCNNISGLVEPVVPEDQHRALYSTHSFKILFKEGGCGTFVPLFFNL 68
           +LYVRDEKFNQPIFFCNNISGLVEPVVPEDQHRALYSTHSFKILFKEGGCGTFVPLFFNL
Sbjct: 74  LLYVRDEKFNQPIFFCNNISGLVEPVVPEDQHRALYSTHSFKILFKEGGCGTFVPLFFNL 133

Query: 69  LSSVRQYNQHMNAGPRVDPLQAAQTPVDEMMRHAYVDPNDPTKIFLQQPATESQ 123
           LSSVRQYNQHMNAGPRVDPLQAAQTPVDEMMRHAYVDPNDPTKIFLQQPATESQ
Sbjct: 134 LSSVRQYNQHMNAGPRVDPLQAAQTPVDEMMRHAYVDPNDPTKIFLQQPATESQ 187

[Close]

BLAST of CsGy3G038410 vs. TrEMBL
Match: tr|A0A1S3CPS8|A0A1S3CPS8_CUCME (uncharacterized protein LOC103502837 OS=Cucumis melo OX=3656 GN=LOC103502837 PE=4 SV=1)

HSP 1 Score: 241.1 bits (614), Expect = 1.5e-60
Identity = 112/114 (98.25%), Postives = 113/114 (99.12%), Query Frame = 0


Query: 9   MLYVRDEKFNQPIFFCNNISGLVEPVVPEDQHRALYSTHSFKILFKEGGCGTFVPLFFNL 68
           +LYVRDEKFNQPIFFCNNISGLVEPVVPEDQHRALYSTHSFKILFKEGGCGTFVPLFFNL
Sbjct: 74  LLYVRDEKFNQPIFFCNNISGLVEPVVPEDQHRALYSTHSFKILFKEGGCGTFVPLFFNL 133

Query: 69  LSSVRQYNQHMNAGPRVDPLQAAQTPVDEMMRHAYVDPNDPTKIFLQQPATESQ 123
           LSSVRQYNQHMNAGPRVDPLQAAQTPVDEMMRHAYVDPNDPTKIFLQQP TESQ
Sbjct: 134 LSSVRQYNQHMNAGPRVDPLQAAQTPVDEMMRHAYVDPNDPTKIFLQQPTTESQ 187

[Close]

BLAST of CsGy3G038410 vs. TrEMBL
Match: tr|A0A218WUR8|A0A218WUR8_PUNGR (Uncharacterized protein OS=Punica granatum OX=22663 GN=CDL15_Pgr009962 PE=4 SV=1)

HSP 1 Score: 217.2 bits (552), Expect = 2.4e-53
Identity = 100/116 (86.21%), Postives = 108/116 (93.10%), Query Frame = 0


Query: 9   MLYVRDEKFNQPIFFCNNISGLVEPVVPEDQHRALYSTHSFKILFKEGGCGTFVPLFFNL 68
           +LYV  EKFNQPIFFCNNISG VEPVVP+DQHRALYSTHSFKILFKEGGCGTF+PLFFNL
Sbjct: 432 LLYVHGEKFNQPIFFCNNISGFVEPVVPDDQHRALYSTHSFKILFKEGGCGTFIPLFFNL 491

Query: 69  LSSVRQYNQHMNA--GPRVDPLQAAQTPVDEMMRHAYVDPNDPTKIFLQQPATESQ 123
           +SSVRQYNQH+N+   PRVDPLQAAQ PVDEMMRHAYVDPNDPT+IFLQQP +ESQ
Sbjct: 492 ISSVRQYNQHLNSTPQPRVDPLQAAQPPVDEMMRHAYVDPNDPTRIFLQQPTSESQ 547

[Close]

BLAST of CsGy3G038410 vs. TrEMBL
Match: tr|A0A2I0KAN4|A0A2I0KAN4_PUNGR (Uncharacterized protein OS=Punica granatum OX=22663 GN=CRG98_013990 PE=4 SV=1)

HSP 1 Score: 217.2 bits (552), Expect = 2.4e-53
Identity = 100/116 (86.21%), Postives = 108/116 (93.10%), Query Frame = 0


Query: 9   MLYVRDEKFNQPIFFCNNISGLVEPVVPEDQHRALYSTHSFKILFKEGGCGTFVPLFFNL 68
           +LYV  EKFNQPIFFCNNISG VEPVVP+DQHRALYSTHSFKILFKEGGCGTF+PLFFNL
Sbjct: 74  LLYVHGEKFNQPIFFCNNISGFVEPVVPDDQHRALYSTHSFKILFKEGGCGTFIPLFFNL 133

Query: 69  LSSVRQYNQHMNA--GPRVDPLQAAQTPVDEMMRHAYVDPNDPTKIFLQQPATESQ 123
           +SSVRQYNQH+N+   PRVDPLQAAQ PVDEMMRHAYVDPNDPT+IFLQQP +ESQ
Sbjct: 134 ISSVRQYNQHLNSTPQPRVDPLQAAQPPVDEMMRHAYVDPNDPTRIFLQQPTSESQ 189

[Close]

BLAST of CsGy3G038410 vs. TrEMBL
Match: tr|A0A1R3K8H8|A0A1R3K8H8_COCAP (Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_02461 PE=4 SV=1)

HSP 1 Score: 213.0 bits (541), Expect = 4.5e-52
Identity = 100/116 (86.21%), Postives = 106/116 (91.38%), Query Frame = 0


Query: 9   MLYVRDEKFNQPIFFCNNISGLVEPVVPEDQHRALYSTHSFKILFKEGGCGTFVPLFFNL 68
           +LYV  EKFNQPIF CNNISG VEPVVPE +HRALYSTHSFKILFKEGGCGTFVPLF NL
Sbjct: 74  LLYVHGEKFNQPIFHCNNISGHVEPVVPETEHRALYSTHSFKILFKEGGCGTFVPLFLNL 133

Query: 69  LSSVRQYNQHMNAG--PRVDPLQAAQTPVDEMMRHAYVDPNDPTKIFLQQPATESQ 123
           +SSVRQYNQH+NA   PR+DPLQAAQTPVDEMMRHAYVDPNDPT+IFLQQP TESQ
Sbjct: 134 ISSVRQYNQHVNAAPQPRMDPLQAAQTPVDEMMRHAYVDPNDPTRIFLQQPTTESQ 189

The following BLAST results are available for this feature:

BLAST of CsGy3G038410 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004141150.1	7.9e-61	99.12	PREDICTED: uncharacterized protein LOC101208147 [Cucumis sativus] >KGN59776.1 hy...	[more]
XP_008465172.1	2.3e-60	98.25	PREDICTED: uncharacterized protein LOC103502837 [Cucumis melo]	[more]
XP_022934071.1	2.2e-58	94.74	uncharacterized protein LOC111441354 [Cucurbita moschata]	[more]
XP_022983649.1	2.2e-58	94.74	uncharacterized protein LOC111482201 [Cucurbita maxima] >XP_023526417.1 uncharac...	[more]
XP_022152415.1	4.1e-57	92.98	UPF0664 stress-induced protein C29B12.11c [Momordica charantia]	[more]

BLAST of CsGy3G038410 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G11680.1	6.3e-52	77.69	FUNCTIONS IN: molecular_function unknown	[more]

BLAST of CsGy3G038410 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy3G038410 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LI97\|A0A0A0LI97_CUCSA	5.3e-61	99.12	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G845430 PE=4 SV=1	[more]
tr\|A0A1S3CPS8\|A0A1S3CPS8_CUCME	1.5e-60	98.25	uncharacterized protein LOC103502837 OS=Cucumis melo OX=3656 GN=LOC103502837 PE=...	[more]
tr\|A0A218WUR8\|A0A218WUR8_PUNGR	2.4e-53	86.21	Uncharacterized protein OS=Punica granatum OX=22663 GN=CDL15_Pgr009962 PE=4 SV=1	[more]
tr\|A0A2I0KAN4\|A0A2I0KAN4_PUNGR	2.4e-53	86.21	Uncharacterized protein OS=Punica granatum OX=22663 GN=CRG98_013990 PE=4 SV=1	[more]
tr\|A0A1R3K8H8\|A0A1R3K8H8_COCAP	4.5e-52	86.21	Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_02461 PE=4 ...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005886	plasma membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy3G038410.1	CsGy3G038410.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR31606:SF12	SUBFAMILY NOT NAMED	coord: 10..121
None	No IPR available	PANTHER	PTHR31606	FAMILY NOT NAMED	coord: 10..121

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy3G038410	Cucumber (Chinese Long) v3	cgybcucB117
CsGy3G038410	Watermelon (97103) v2	cgybwmbB178
CsGy3G038410	Wax gourd	cgybwgoB226
CsGy3G038410	Cucurbita maxima (Rimu)	cgybcmaB320
CsGy3G038410	Cucurbita maxima (Rimu)	cgybcmaB431
CsGy3G038410	Cucurbita moschata (Rifu)	cgybcmoB293
CsGy3G038410	Cucurbita moschata (Rifu)	cgybcmoB404
CsGy3G038410	Cucurbita pepo (Zucchini)	cgybcpeB403
CsGy3G038410	Cucurbita pepo (Zucchini)	cgybcpeB458
CsGy3G038410	Cucumber (Chinese Long) v2	cgybcuB110
CsGy3G038410	Bottle gourd (USVL1VR-Ls)	cgyblsiB171
CsGy3G038410	Melon (DHL92) v3.5.1	cgybmeB184
CsGy3G038410	Melon (DHL92) v3.6.1	cgybmedB185
CsGy3G038410	Watermelon (Charleston Gray)	cgybwcgB179
CsGy3G038410	Watermelon (97103) v1	cgybwmB187
CsGy3G038410	Wild cucumber (PI 183967)	cgybcpiB111
CsGy3G038410	Silver-seed gourd	carcgybB0289
CsGy3G038410	Silver-seed gourd	carcgybB0804