CsGy3G036800 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy3G036800
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	AP2-like ethylene-responsive transcription factor isoform X2
Location	Chr3 : 34842599 .. 34842832 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGCGGCAGCTTTGGCACTGAAGAACGAGGATAACCTGAGAATATGTTGGACAGAAGAAGAAGCTCAAACTCAACCCATAAGACGTGTTAAGCGACGTCGGAGAGACCCGGCTGCCGCCACCACCACCGCCGATCAAACTAATAAGCAGCAGTCTCCGAAACAACAGTCCGATCAAGCTCCTACCACCACTATGAAGCGAAGTTCAAGATTTCGTGGCGTTAGCAGGTAA

mRNA sequence

ATGGAGGCGGCAGCTTTGGCACTGAAGAACGAGGATAACCTGAGAATATGTTGGACAGAAGAAGAAGCTCAAACTCAACCCATAAGACGTGTTAAGCGACGTCGGAGAGACCCGGCTGCCGCCACCACCACCGCCGATCAAACTAATAAGCAGCAGTCTCCGAAACAACAGTCCGATCAAGCTCCTACCACCACTATGAAGCGAAGTTCAAGATTTCGTGGCGTTAGCAGGTAA

Coding sequence (CDS)

ATGGAGGCGGCAGCTTTGGCACTGAAGAACGAGGATAACCTGAGAATATGTTGGACAGAAGAAGAAGCTCAAACTCAACCCATAAGACGTGTTAAGCGACGTCGGAGAGACCCGGCTGCCGCCACCACCACCGCCGATCAAACTAATAAGCAGCAGTCTCCGAAACAACAGTCCGATCAAGCTCCTACCACCACTATGAAGCGAAGTTCAAGATTTCGTGGCGTTAGCAGGTAA

Protein sequence

MEAAALALKNEDNLRICWTEEEAQTQPIRRVKRRRRDPAAATTTADQTNKQQSPKQQSDQAPTTTMKRSSRFRGVSR

Homology

[Close]

BLAST of CsGy3G036800 vs. NCBI nr
Match: XP_004147491.1 (PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060 isoform X1 [Cucumis sativus])

HSP 1 Score: 63.9 bits (154), Expect = 2.7e-07
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0


Query: 1  MEAAALALKNEDNLRICWTEEEAQTQPIRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
          MEAAALALKNEDNLRICWTEEEAQTQPIRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 1  MEAAALALKNEDNLRICWTEEEAQTQPIRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 61 XXXXXXXXSSRFRGVSR 78
          XXXXXXXXSSRFRGVSR
Sbjct: 61 XXXXXXXXSSRFRGVSR 77

[Close]

BLAST of CsGy3G036800 vs. NCBI nr
Match: KGN59590.1 (hypothetical protein Csa_3G827320 [Cucumis sativus])

HSP 1 Score: 63.9 bits (154), Expect = 2.7e-07
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0


Query: 1  MEAAALALKNEDNLRICWTEEEAQTQPIRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
          MEAAALALKNEDNLRICWTEEEAQTQPIRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 1  MEAAALALKNEDNLRICWTEEEAQTQPIRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 61 XXXXXXXXSSRFRGVSR 78
          XXXXXXXXSSRFRGVSR
Sbjct: 61 XXXXXXXXSSRFRGVSR 77

[Close]

BLAST of CsGy3G036800 vs. NCBI nr
Match: XP_011652242.1 (PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060 isoform X2 [Cucumis sativus])

HSP 1 Score: 63.9 bits (154), Expect = 2.7e-07
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0


Query: 1  MEAAALALKNEDNLRICWTEEEAQTQPIRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
          MEAAALALKNEDNLRICWTEEEAQTQPIRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 1  MEAAALALKNEDNLRICWTEEEAQTQPIRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 61 XXXXXXXXSSRFRGVSR 78
          XXXXXXXXSSRFRGVSR
Sbjct: 61 XXXXXXXXSSRFRGVSR 77

[Close]

BLAST of CsGy3G036800 vs. NCBI nr
Match: XP_008443427.1 (PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060 isoform X1 [Cucumis melo])

HSP 1 Score: 58.5 bits (140), Expect = 1.1e-05
Identity = 27/29 (93.10%), Postives = 27/29 (93.10%), Query Frame = 0


Query: 1  MEAAALALKNEDNLRICWTEEEAQTQPIR 30
          MEAAAL LKNEDNLRICW EEEAQTQPIR
Sbjct: 1  MEAAALVLKNEDNLRICWREEEAQTQPIR 29

[Close]

BLAST of CsGy3G036800 vs. NCBI nr
Match: XP_008443428.1 (PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060 isoform X2 [Cucumis melo])

HSP 1 Score: 58.5 bits (140), Expect = 1.1e-05
Identity = 27/29 (93.10%), Postives = 27/29 (93.10%), Query Frame = 0


Query: 1  MEAAALALKNEDNLRICWTEEEAQTQPIR 30
          MEAAAL LKNEDNLRICW EEEAQTQPIR
Sbjct: 1  MEAAALVLKNEDNLRICWREEEAQTQPIR 29

[Close]

BLAST of CsGy3G036800 vs. TrEMBL
Match: tr|A0A0A0LC58|A0A0A0LC58_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G827320 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.8e-07
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0


Query: 1  MEAAALALKNEDNLRICWTEEEAQTQPIRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
          MEAAALALKNEDNLRICWTEEEAQTQPIRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 1  MEAAALALKNEDNLRICWTEEEAQTQPIRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 61 XXXXXXXXSSRFRGVSR 78
          XXXXXXXXSSRFRGVSR
Sbjct: 61 XXXXXXXXSSRFRGVSR 77

[Close]

BLAST of CsGy3G036800 vs. TrEMBL
Match: tr|A0A1S3B8S9|A0A1S3B8S9_CUCME (AP2-like ethylene-responsive transcription factor At1g16060 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103487019 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 7.5e-06
Identity = 27/29 (93.10%), Postives = 27/29 (93.10%), Query Frame = 0


Query: 1  MEAAALALKNEDNLRICWTEEEAQTQPIR 30
          MEAAAL LKNEDNLRICW EEEAQTQPIR
Sbjct: 1  MEAAALVLKNEDNLRICWREEEAQTQPIR 29

[Close]

BLAST of CsGy3G036800 vs. TrEMBL
Match: tr|A0A1S3B8R2|A0A1S3B8R2_CUCME (AP2-like ethylene-responsive transcription factor At1g16060 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103487019 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 7.5e-06
Identity = 27/29 (93.10%), Postives = 27/29 (93.10%), Query Frame = 0


Query: 1  MEAAALALKNEDNLRICWTEEEAQTQPIR 30
          MEAAAL LKNEDNLRICW EEEAQTQPIR
Sbjct: 1  MEAAALVLKNEDNLRICWREEEAQTQPIR 29

The following BLAST results are available for this feature:

BLAST of CsGy3G036800 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004147491.1	2.7e-07	100.00	PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060 isoform X...	[more]
KGN59590.1	2.7e-07	100.00	hypothetical protein Csa_3G827320 [Cucumis sativus]	[more]
XP_011652242.1	2.7e-07	100.00	PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060 isoform X...	[more]
XP_008443427.1	1.1e-05	93.10	PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060 isoform X...	[more]
XP_008443428.1	1.1e-05	93.10	PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060 isoform X...	[more]

BLAST of CsGy3G036800 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsGy3G036800 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy3G036800 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LC58\|A0A0A0LC58_CUCSA	1.8e-07	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G827320 PE=4 SV=1	[more]
tr\|A0A1S3B8S9\|A0A1S3B8S9_CUCME	7.5e-06	93.10	AP2-like ethylene-responsive transcription factor At1g16060 isoform X2 OS=Cucumi...	[more]
tr\|A0A1S3B8R2\|A0A1S3B8R2_CUCME	7.5e-06	93.10	AP2-like ethylene-responsive transcription factor At1g16060 isoform X1 OS=Cucumi...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007275	multicellular organism development
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005667	transcription factor complex
molecular_function	GO:0003700	transcription factor activity, sequence-specific DNA binding
molecular_function	GO:0003677	DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy3G036800.1	CsGy3G036800.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 20..77
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 41..77
None	No IPR available	PANTHER	PTHR32467:SF71	SUBFAMILY NOT NAMED	coord: 15..77
None	No IPR available	PANTHER	PTHR32467	FAMILY NOT NAMED	coord: 15..77

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy3G036800	Csa3G827320	Cucumber (Chinese Long) v2	cgybcuB110
CsGy3G036800	Carg09775	Silver-seed gourd	carcgybB0444

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy3G036800	Watermelon (97103) v2	cgybwmbB178
CsGy3G036800	Watermelon (97103) v2	cgybwmbB244
CsGy3G036800	Wax gourd	cgybwgoB211
CsGy3G036800	Wax gourd	cgybwgoB255
CsGy3G036800	Cucumber (Gy14) v2	cgybcgybB094
CsGy3G036800	Cucumber (Gy14) v2	cgybcgybB098
CsGy3G036800	Cucurbita maxima (Rimu)	cgybcmaB292
CsGy3G036800	Cucurbita maxima (Rimu)	cgybcmaB306
CsGy3G036800	Cucurbita maxima (Rimu)	cgybcmaB327
CsGy3G036800	Cucurbita moschata (Rifu)	cgybcmoB265
CsGy3G036800	Cucurbita moschata (Rifu)	cgybcmoB279
CsGy3G036800	Cucurbita pepo (Zucchini)	cgybcpeB312
CsGy3G036800	Cucurbita pepo (Zucchini)	cgybcpeB395
CsGy3G036800	Cucurbita pepo (Zucchini)	cgybcpeB415
CsGy3G036800	Watermelon (97103) v1	cgybwmB224
CsGy3G036800	Cucumber (Chinese Long) v2	cgybcuB130
CsGy3G036800	Cucumber (Chinese Long) v2	cgybcuB133
CsGy3G036800	Bottle gourd (USVL1VR-Ls)	cgyblsiB161
CsGy3G036800	Bottle gourd (USVL1VR-Ls)	cgyblsiB171
CsGy3G036800	Melon (DHL92) v3.5.1	cgybmeB145
CsGy3G036800	Melon (DHL92) v3.5.1	cgybmeB184
CsGy3G036800	Melon (DHL92) v3.6.1	cgybmedB143
CsGy3G036800	Watermelon (Charleston Gray)	cgybwcgB209
CsGy3G036800	Melon (DHL92) v3.6.1	cgybmedB185
CsGy3G036800	Watermelon (Charleston Gray)	cgybwcgB163
CsGy3G036800	Watermelon (Charleston Gray)	cgybwcgB179
CsGy3G036800	Watermelon (97103) v1	cgybwmB172
CsGy3G036800	Watermelon (97103) v1	cgybwmB187
CsGy3G036800	Wild cucumber (PI 183967)	cgybcpiB111
CsGy3G036800	Wild cucumber (PI 183967)	cgybcpiB132
CsGy3G036800	Wild cucumber (PI 183967)	cgybcpiB136
CsGy3G036800	Silver-seed gourd	carcgybB0226
CsGy3G036800	Silver-seed gourd	carcgybB0275
CsGy3G036800	Cucumber (Chinese Long) v3	cgybcucB117
CsGy3G036800	Cucumber (Chinese Long) v3	cgybcucB140