CsGy3G036150 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy3G036150
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	probable mitochondrial saccharopine dehydrogenase-like oxidoreductase At5g39410
Location	Chr3 : 34399695 .. 34400478 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGCATGGGGCTTTGGATAGTAAGATTAACTTGATAAGTTGATTCAAACGTAGTTAGAAGAACACTCTCTACTTTAGTTCAAAACCCCCAACACATCAAACAAATGAACGCTTTTTAGTCGTCGGTAAAGCCAACTCGCTTTGGAGTTAAAATCGGCACGAAATCCTTTCTTGAAATCTTACAATACGTCGCAGTTGGGATGTTCATAGGGAAGTTTGCTAAATACCCATTGGGGAGGTGGCTTTTGTTAACATTCCCTCCCATTTTTAGCCTTTGTTTGTTCAATAAGAAGGGACTTTCAGAAGACGGAGTGAATAATGTGTCATTCAAAACATGGACAGATCTATTAAGGGACCAGGAGGCATCTCACATTCCCGACTTTTGTATTTTAATATTAGTTTTGAAGTGTCAAATTACAATATATTTTAAATAATGCAAGTTTTTATTATATTTTGTTTTTGGTATAGTGGTTGTGCCCTCTTTAAAAGCGACTGATTCAAATACAAAAATTAAGAATGTGAGGAAGCACTTTTAATAAATCCACCCCACACACTACAACGCTTGGGATAGAAATACTTTCTATTCATATTGGCTAACGTTCATTTTTCTAAAGTTGGTTTTAAGTGTTAATTCTAATTTAACTTATTTTATAAAAAAAAAGTTTAAAAAACCACTAAAAGATAAAAATTCATTAGTGTTCCACAAATTCATTCTCATAACTAATTTTTTTTTAAAAAATATATATTTTAGATAATTCTCAAACACACAATTTCATCTTTTAA

mRNA sequence

ATGGGCATGGGGCTTTGGATATCGTCGGTAAAGCCAACTCGCTTTGGAGTTAAAATCGGCACGAAATCCTTTCTTGAAATCTTACAATACGTCGCAGTTGGGATGTTCATAGGGAAGTTTGCTAAATACCCATTGGGGAGGTGGCTTTTGTTAACATTCCCTCCCATTTTTAGCCTTTATAATTCTCAAACACACAATTTCATCTTTTAA

Coding sequence (CDS)

ATGGGCATGGGGCTTTGGATATCGTCGGTAAAGCCAACTCGCTTTGGAGTTAAAATCGGCACGAAATCCTTTCTTGAAATCTTACAATACGTCGCAGTTGGGATGTTCATAGGGAAGTTTGCTAAATACCCATTGGGGAGGTGGCTTTTGTTAACATTCCCTCCCATTTTTAGCCTTTATAATTCTCAAACACACAATTTCATCTTTTAA

Protein sequence

MGMGLWISSVKPTRFGVKIGTKSFLEILQYVAVGMFIGKFAKYPLGRWLLLTFPPIFSLYNSQTHNFIF

Homology

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BLAST of CsGy3G036150 vs. NCBI nr
Match: XP_008443614.1 (PREDICTED: probable mitochondrial saccharopine dehydrogenase-like oxidoreductase At5g39410 [Cucumis melo])

HSP 1 Score: 84.7 bits (208), Expect = 1.3e-13
Identity = 43/57 (75.44%), Postives = 46/57 (80.70%), Query Frame = 0


Query: 3   MGLWISSVKPTRFGVKIGTKSFLEILQYVAVGMFIGKFAKYPLGRWLLLTFPPIFSL 60
           M  + SSVKP RF VKIGTKSFLEIL+ VA GMFIG FAK P GRWLLLTFP IF+L
Sbjct: 278 MNTFWSSVKPARFIVKIGTKSFLEILRCVATGMFIGMFAKNPFGRWLLLTFPSIFTL 334

[Close]

BLAST of CsGy3G036150 vs. NCBI nr
Match: XP_022925525.1 (probable mitochondrial saccharopine dehydrogenase-like oxidoreductase At5g39410 [Cucurbita moschata])

HSP 1 Score: 79.3 bits (194), Expect = 5.5e-12
Identity = 37/52 (71.15%), Postives = 43/52 (82.69%), Query Frame = 0


Query: 8   SSVKPTRFGVKIGTKSFLEILQYVAVGMFIGKFAKYPLGRWLLLTFPPIFSL 60
           SSVKP RFGVKIG+KS ++ILQ +AVGM +GK AK   GRWLLLTFP +FSL
Sbjct: 284 SSVKPARFGVKIGSKSLIDILQIIAVGMIMGKLAKSSFGRWLLLTFPSVFSL 335

[Close]

BLAST of CsGy3G036150 vs. NCBI nr
Match: XP_004136685.1 (PREDICTED: probable mitochondrial saccharopine dehydrogenase-like oxidoreductase At5g39410 [Cucumis sativus])

HSP 1 Score: 76.6 bits (187), Expect = 3.6e-11
Identity = 37/52 (71.15%), Postives = 41/52 (78.85%), Query Frame = 0


Query: 8   SSVKPTRFGVKIGTKSFLEILQYVAVGMFIGKFAKYPLGRWLLLTFPPIFSL 60
           SSVKP  FGVKIGTKS + IL+ +AVGMFIG   K  LGRWLLLTFP +FSL
Sbjct: 282 SSVKPAHFGVKIGTKSLIGILRIIAVGMFIGLLGKTSLGRWLLLTFPSVFSL 333

[Close]

BLAST of CsGy3G036150 vs. NCBI nr
Match: KGN59528.1 (hypothetical protein Csa_3G824730 [Cucumis sativus])

HSP 1 Score: 76.6 bits (187), Expect = 3.6e-11
Identity = 37/52 (71.15%), Postives = 41/52 (78.85%), Query Frame = 0


Query: 8   SSVKPTRFGVKIGTKSFLEILQYVAVGMFIGKFAKYPLGRWLLLTFPPIFSL 60
           SSVKP RFGVKIG KSFL IL+++  G+FIG  AK   GRWLLLTFP IFSL
Sbjct: 253 SSVKPARFGVKIGMKSFLGILRFIVFGIFIGMLAKKAFGRWLLLTFPSIFSL 304

[Close]

BLAST of CsGy3G036150 vs. NCBI nr
Match: KGN59529.1 (hypothetical protein Csa_3G824740 [Cucumis sativus])

HSP 1 Score: 76.6 bits (187), Expect = 3.6e-11
Identity = 37/52 (71.15%), Postives = 41/52 (78.85%), Query Frame = 0


Query: 8   SSVKPTRFGVKIGTKSFLEILQYVAVGMFIGKFAKYPLGRWLLLTFPPIFSL 60
           SSVKP  FGVKIGTKS + IL+ +AVGMFIG   K  LGRWLLLTFP +FSL
Sbjct: 315 SSVKPAHFGVKIGTKSLIGILRIIAVGMFIGLLGKTSLGRWLLLTFPSVFSL 366

[Close]

BLAST of CsGy3G036150 vs. TAIR10
Match: AT5G39410.1 (Saccharopine dehydrogenase )

HSP 1 Score: 63.2 bits (152), Expect = 7.4e-11
Identity = 28/52 (53.85%), Postives = 37/52 (71.15%), Query Frame = 0


Query: 8   SSVKPTRFGVKIGTKSFLEILQYVAVGMFIGKFAKYPLGRWLLLTFPPIFSL 60
           SS+KP  FGVKI +KS   I +YV +G+ +G  +K+  GRWLLL FP +FSL
Sbjct: 289 SSIKPAHFGVKITSKSLFGIFRYVTLGVSLGLLSKFSFGRWLLLKFPSVFSL 340

[Close]

BLAST of CsGy3G036150 vs. Swiss-Prot
Match: sp|Q8LGI2|SCPDL_ARATH (Probable mitochondrial saccharopine dehydrogenase-like oxidoreductase At5g39410 OS=Arabidopsis thaliana OX=3702 GN=At5g39410 PE=1 SV=2)

HSP 1 Score: 63.2 bits (152), Expect = 1.3e-09
Identity = 28/52 (53.85%), Postives = 37/52 (71.15%), Query Frame = 0


Query: 8   SSVKPTRFGVKIGTKSFLEILQYVAVGMFIGKFAKYPLGRWLLLTFPPIFSL 60
           SS+KP  FGVKI +KS   I +YV +G+ +G  +K+  GRWLLL FP +FSL
Sbjct: 289 SSIKPAHFGVKITSKSLFGIFRYVTLGVSLGLLSKFSFGRWLLLKFPSVFSL 340

[Close]

BLAST of CsGy3G036150 vs. TrEMBL
Match: tr|A0A1S3B7Z4|A0A1S3B7Z4_CUCME (probable mitochondrial saccharopine dehydrogenase-like oxidoreductase At5g39410 OS=Cucumis melo OX=3656 GN=LOC103487170 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 8.7e-14
Identity = 43/57 (75.44%), Postives = 46/57 (80.70%), Query Frame = 0


Query: 3   MGLWISSVKPTRFGVKIGTKSFLEILQYVAVGMFIGKFAKYPLGRWLLLTFPPIFSL 60
           M  + SSVKP RF VKIGTKSFLEIL+ VA GMFIG FAK P GRWLLLTFP IF+L
Sbjct: 278 MNTFWSSVKPARFIVKIGTKSFLEILRCVATGMFIGMFAKNPFGRWLLLTFPSIFTL 334

[Close]

BLAST of CsGy3G036150 vs. TrEMBL
Match: tr|A0A0A0LCQ2|A0A0A0LCQ2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G824730 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 2.4e-11
Identity = 37/52 (71.15%), Postives = 41/52 (78.85%), Query Frame = 0


Query: 8   SSVKPTRFGVKIGTKSFLEILQYVAVGMFIGKFAKYPLGRWLLLTFPPIFSL 60
           SSVKP RFGVKIG KSFL IL+++  G+FIG  AK   GRWLLLTFP IFSL
Sbjct: 253 SSVKPARFGVKIGMKSFLGILRFIVFGIFIGMLAKKAFGRWLLLTFPSIFSL 304

[Close]

BLAST of CsGy3G036150 vs. TrEMBL
Match: tr|A0A0A0LF70|A0A0A0LF70_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G824740 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 2.4e-11
Identity = 37/52 (71.15%), Postives = 41/52 (78.85%), Query Frame = 0


Query: 8   SSVKPTRFGVKIGTKSFLEILQYVAVGMFIGKFAKYPLGRWLLLTFPPIFSL 60
           SSVKP  FGVKIGTKS + IL+ +AVGMFIG   K  LGRWLLLTFP +FSL
Sbjct: 315 SSVKPAHFGVKIGTKSLIGILRIIAVGMFIGLLGKTSLGRWLLLTFPSVFSL 366

[Close]

BLAST of CsGy3G036150 vs. TrEMBL
Match: tr|A0A2P5FEV4|A0A2P5FEV4_9ROSA (Hopanoid-associated sugar epimerase OS=Trema orientalis OX=63057 GN=TorRG33x02_079160 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 2.0e-10
Identity = 35/52 (67.31%), Postives = 40/52 (76.92%), Query Frame = 0


Query: 8   SSVKPTRFGVKIGTKSFLEILQYVAVGMFIGKFAKYPLGRWLLLTFPPIFSL 60
           SSVKP  FGVKIGTKS L IL+ +AVG+FIG F  +  GRWLLL FP +FSL
Sbjct: 285 SSVKPAHFGVKIGTKSLLGILRIIAVGVFIGIFGNFAYGRWLLLKFPSVFSL 336

[Close]

BLAST of CsGy3G036150 vs. TrEMBL
Match: tr|A0A1S3B8K4|A0A1S3B8K4_CUCME (probable mitochondrial saccharopine dehydrogenase-like oxidoreductase At5g39410 OS=Cucumis melo OX=3656 GN=LOC103486968 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 2.0e-10
Identity = 35/52 (67.31%), Postives = 39/52 (75.00%), Query Frame = 0


Query: 8   SSVKPTRFGVKIGTKSFLEILQYVAVGMFIGKFAKYPLGRWLLLTFPPIFSL 60
           SSVKP  FGVKIGTKS + IL+ + VGMFIG   K   GRWLLLTFP +FSL
Sbjct: 282 SSVKPAHFGVKIGTKSLIGILRIITVGMFIGLLGKTSFGRWLLLTFPSVFSL 333

The following BLAST results are available for this feature:

BLAST of CsGy3G036150 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008443614.1	1.3e-13	75.44	PREDICTED: probable mitochondrial saccharopine dehydrogenase-like oxidoreductase...	[more]
XP_022925525.1	5.5e-12	71.15	probable mitochondrial saccharopine dehydrogenase-like oxidoreductase At5g39410 ...	[more]
XP_004136685.1	3.6e-11	71.15	PREDICTED: probable mitochondrial saccharopine dehydrogenase-like oxidoreductase...	[more]
KGN59528.1	3.6e-11	71.15	hypothetical protein Csa_3G824730 [Cucumis sativus]	[more]
KGN59529.1	3.6e-11	71.15	hypothetical protein Csa_3G824740 [Cucumis sativus]	[more]

BLAST of CsGy3G036150 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G39410.1	7.4e-11	53.85	Saccharopine dehydrogenase	[more]

BLAST of CsGy3G036150 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q8LGI2\|SCPDL_ARATH	1.3e-09	53.85	Probable mitochondrial saccharopine dehydrogenase-like oxidoreductase At5g39410 ...	[more]

BLAST of CsGy3G036150 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3B7Z4\|A0A1S3B7Z4_CUCME	8.7e-14	75.44	probable mitochondrial saccharopine dehydrogenase-like oxidoreductase At5g39410 ...	[more]
tr\|A0A0A0LCQ2\|A0A0A0LCQ2_CUCSA	2.4e-11	71.15	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G824730 PE=4 SV=1	[more]
tr\|A0A0A0LF70\|A0A0A0LF70_CUCSA	2.4e-11	71.15	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G824740 PE=4 SV=1	[more]
tr\|A0A2P5FEV4\|A0A2P5FEV4_9ROSA	2.0e-10	67.31	Hopanoid-associated sugar epimerase OS=Trema orientalis OX=63057 GN=TorRG33x02_0...	[more]
tr\|A0A1S3B8K4\|A0A1S3B8K4_CUCME	2.0e-10	67.31	probable mitochondrial saccharopine dehydrogenase-like oxidoreductase At5g39410 ...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055114	oxidation-reduction process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0016491	oxidoreductase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy3G036150.1	CsGy3G036150.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy3G036150	CSPI03G38630	Wild cucumber (PI 183967)	cgybcpiB111
CsGy3G036150	CsaV3_3G041020	Cucumber (Chinese Long) v3	cgybcucB117
CsGy3G036150	Bhi11G002442	Wax gourd	cgybwgoB211

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy3G036150	Watermelon (97103) v2	cgybwmbB178
CsGy3G036150	Wax gourd	cgybwgoB255
CsGy3G036150	Cucurbita pepo (Zucchini)	cgybcpeB420
CsGy3G036150	Cucumber (Gy14) v2	cgybcgybB094
CsGy3G036150	Cucurbita maxima (Rimu)	cgybcmaB299
CsGy3G036150	Cucurbita maxima (Rimu)	cgybcmaB306
CsGy3G036150	Cucurbita maxima (Rimu)	cgybcmaB327
CsGy3G036150	Cucurbita moschata (Rifu)	cgybcmoB272
CsGy3G036150	Cucurbita moschata (Rifu)	cgybcmoB279
CsGy3G036150	Cucurbita pepo (Zucchini)	cgybcpeB312
CsGy3G036150	Cucurbita pepo (Zucchini)	cgybcpeB395
CsGy3G036150	Cucumber (Chinese Long) v2	cgybcuB110
CsGy3G036150	Cucumber (Chinese Long) v2	cgybcuB130
CsGy3G036150	Bottle gourd (USVL1VR-Ls)	cgyblsiB171
CsGy3G036150	Melon (DHL92) v3.5.1	cgybmeB184
CsGy3G036150	Melon (DHL92) v3.6.1	cgybmedB185
CsGy3G036150	Watermelon (Charleston Gray)	cgybwcgB179
CsGy3G036150	Watermelon (97103) v1	cgybwmB187
CsGy3G036150	Wild cucumber (PI 183967)	cgybcpiB132
CsGy3G036150	Silver-seed gourd	carcgybB0275
CsGy3G036150	Silver-seed gourd	carcgybB0444