CsGy3G035600 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy3G035600
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	ATP-dependent RNA helicase DBP3-like
Location	Chr3 : 34067012 .. 34067308 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGGAATAATGAAGAAGATCCAGGAAACAGTGCAGAGCCATAAGAAGCAACACGATGGGGAGAATGGAGCTCATGAAGGAGTTGGGATTGTGGAGAAGATGAAAGAGAAGATCCATGGTTACAAAGAGAAAAACAAAGAGAAGAAGAAGCAAAGGAAGGAGAGGAAGGAGAAAAAAGAAAAAGAGAAGAAGGAGAAAAAAGCCAAACAAAAAGCAGAAGAAGCAGAAGAAGAAGAAGATGGGGGTGAAAGCAGCGATGGCGATAGTGACGACAGTGGTGGCGGGAGCGACTAA

mRNA sequence

ATGGCAGGAATAATGAAGAAGATCCAGGAAACAGTGCAGAGCCATAAGAAGCAACACGATGGGGAGAATGGAGCTCATGAAGGAGTTGGGATTGTGGAGAAGATGAAAGAGAAGATCCATGGTTACAAAGAGAAAAACAAAGAGAAGAAGAAGCAAAGGAAGGAGAGGAAGGAGAAAAAAGAAAAAGAGAAGAAGGAGAAAAAAGCCAAACAAAAAGCAGAAGAAGCAGAAGAAGAAGAAGATGGGGGTGAAAGCAGCGATGGCGATAGTGACGACAGTGGTGGCGGGAGCGACTAA

Coding sequence (CDS)

ATGGCAGGAATAATGAAGAAGATCCAGGAAACAGTGCAGAGCCATAAGAAGCAACACGATGGGGAGAATGGAGCTCATGAAGGAGTTGGGATTGTGGAGAAGATGAAAGAGAAGATCCATGGTTACAAAGAGAAAAACAAAGAGAAGAAGAAGCAAAGGAAGGAGAGGAAGGAGAAAAAAGAAAAAGAGAAGAAGGAGAAAAAAGCCAAACAAAAAGCAGAAGAAGCAGAAGAAGAAGAAGATGGGGGTGAAAGCAGCGATGGCGATAGTGACGACAGTGGTGGCGGGAGCGACTAA

Protein sequence

MAGIMKKIQETVQSHKKQHDGENGAHEGVGIVEKMKEKIHGYKEKNKEKKKQRKERKEKKEKEKKEKKAKQKAEEAEEEEDGGESSDGDSDDSGGGSD

Homology

[Close]

BLAST of CsGy3G035600 vs. NCBI nr
Match: KGN59478.1 (hypothetical protein Csa_3G822295 [Cucumis sativus])

HSP 1 Score: 96.3 bits (238), Expect = 6.2e-17
Identity = 46/46 (100.00%), Postives = 46/46 (100.00%), Query Frame = 0


Query: 1  MAGIMKKIQETVQSHKKQHDGENGAHEGVGIVEKMKEKIHGYKEKN 47
          MAGIMKKIQETVQSHKKQHDGENGAHEGVGIVEKMKEKIHGYKEKN
Sbjct: 1  MAGIMKKIQETVQSHKKQHDGENGAHEGVGIVEKMKEKIHGYKEKN 46

[Close]

BLAST of CsGy3G035600 vs. NCBI nr
Match: XP_016899655.1 (PREDICTED: ATP-dependent RNA helicase DBP3-like [Cucumis melo])

HSP 1 Score: 76.6 bits (187), Expect = 5.1e-11
Identity = 39/42 (92.86%), Postives = 40/42 (95.24%), Query Frame = 0


Query: 1  MAGIMKKIQETVQSHKKQHDGENGAHEGVGIVEKMKEKIHGY 43
          MAGIMKKI+ETVQSHKKQHDGENGA EG GIVEKMKEKIHGY
Sbjct: 1  MAGIMKKIKETVQSHKKQHDGENGA-EGGGIVEKMKEKIHGY 41

[Close]

BLAST of CsGy3G035600 vs. TrEMBL
Match: tr|A0A0A0LCI3|A0A0A0LCI3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G822295 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 4.1e-17
Identity = 46/46 (100.00%), Postives = 46/46 (100.00%), Query Frame = 0


Query: 1  MAGIMKKIQETVQSHKKQHDGENGAHEGVGIVEKMKEKIHGYKEKN 47
          MAGIMKKIQETVQSHKKQHDGENGAHEGVGIVEKMKEKIHGYKEKN
Sbjct: 1  MAGIMKKIQETVQSHKKQHDGENGAHEGVGIVEKMKEKIHGYKEKN 46

[Close]

BLAST of CsGy3G035600 vs. TrEMBL
Match: tr|A0A1S4DVB9|A0A1S4DVB9_CUCME (ATP-dependent RNA helicase DBP3-like OS=Cucumis melo OX=3656 GN=LOC107990607 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 3.4e-11
Identity = 39/42 (92.86%), Postives = 40/42 (95.24%), Query Frame = 0


Query: 1  MAGIMKKIQETVQSHKKQHDGENGAHEGVGIVEKMKEKIHGY 43
          MAGIMKKI+ETVQSHKKQHDGENGA EG GIVEKMKEKIHGY
Sbjct: 1  MAGIMKKIKETVQSHKKQHDGENGA-EGGGIVEKMKEKIHGY 41

The following BLAST results are available for this feature:

BLAST of CsGy3G035600 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN59478.1	6.2e-17	100.00	hypothetical protein Csa_3G822295 [Cucumis sativus]	[more]
XP_016899655.1	5.1e-11	92.86	PREDICTED: ATP-dependent RNA helicase DBP3-like [Cucumis melo]	[more]

BLAST of CsGy3G035600 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsGy3G035600 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy3G035600 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LCI3\|A0A0A0LCI3_CUCSA	4.1e-17	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G822295 PE=4 SV=1	[more]
tr\|A0A1S4DVB9\|A0A1S4DVB9_CUCME	3.4e-11	92.86	ATP-dependent RNA helicase DBP3-like OS=Cucumis melo OX=3656 GN=LOC107990607 PE=...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0004386	helicase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy3G035600.1	CsGy3G035600.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 32..82
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 59..76
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..98
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 10..44

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy3G035600	MELO3C009786	Melon (DHL92) v3.5.1	cgybmeB184
CsGy3G035600	CSPI03G38120	Wild cucumber (PI 183967)	cgybcpiB111
CsGy3G035600	MELO3C009786.2	Melon (DHL92) v3.6.1	cgybmedB185
CsGy3G035600	CsaV3_3G040540	Cucumber (Chinese Long) v3	cgybcucB117
CsGy3G035600	Bhi11G002368	Wax gourd	cgybwgoB211

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy3G035600	Silver-seed gourd	carcgybB0263
CsGy3G035600	Watermelon (97103) v2	cgybwmbB178
CsGy3G035600	Cucurbita maxima (Rimu)	cgybcmaB306
CsGy3G035600	Cucurbita maxima (Rimu)	cgybcmaB444
CsGy3G035600	Cucurbita moschata (Rifu)	cgybcmoB279
CsGy3G035600	Cucurbita moschata (Rifu)	cgybcmoB413
CsGy3G035600	Cucurbita pepo (Zucchini)	cgybcpeB395
CsGy3G035600	Cucurbita pepo (Zucchini)	cgybcpeB451
CsGy3G035600	Cucumber (Chinese Long) v2	cgybcuB110
CsGy3G035600	Bottle gourd (USVL1VR-Ls)	cgyblsiB171
CsGy3G035600	Watermelon (Charleston Gray)	cgybwcgB179
CsGy3G035600	Watermelon (97103) v1	cgybwmB187