CsGy3G033670 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy3G033670
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	transmembrane protein
Location	Chr3 : 32621682 .. 32622000 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTACTAGAGAAGTTTACGAACAGAAGCTAAGAAGAGGCAATCTCTACCATGAACCCACTACGAATCCAGGGCTCGGATCGCCTCGTTGCCCTCGCTGTTTTTCTCTTCTTAAACCCGACCCTGTATTTGTCTCTTCTTCTTCTTCTTCTATTAAGCACCTTCTACTACTTAAGTTTTTTAGTTTTGGGATTCATGTTTGAGTTTTACTATGTTTTGATTCAGGATAAAAGTGAATGGGCCATCAATCCTGTTCTCCACGGTGTTACTGCTGTGGTGAGTTGCCATCGTTCCGATCTTCGATTTTATTTGCTTTGA

mRNA sequence

ATGGGTACTAGAGAAGTTTACGAACAGAAGCTAAGAAGAGGCAATCTCTACCATGAACCCACTACGAATCCAGGGCTCGGATCGCCTCGTTGCCCTCGCTGTTTTTCTCTTCTTAAACCCGACCCTGATAAAAGTGAATGGGCCATCAATCCTGTTCTCCACGGTGTTACTGCTGTGGTGAGTTGCCATCGTTCCGATCTTCGATTTTATTTGCTTTGA

Coding sequence (CDS)

ATGGGTACTAGAGAAGTTTACGAACAGAAGCTAAGAAGAGGCAATCTCTACCATGAACCCACTACGAATCCAGGGCTCGGATCGCCTCGTTGCCCTCGCTGTTTTTCTCTTCTTAAACCCGACCCTGATAAAAGTGAATGGGCCATCAATCCTGTTCTCCACGGTGTTACTGCTGTGGTGAGTTGCCATCGTTCCGATCTTCGATTTTATTTGCTTTGA

Protein sequence

MGTREVYEQKLRRGNLYHEPTTNPGLGSPRCPRCFSLLKPDPDKSEWAINPVLHGVTAVVSCHRSDLRFYLL

Homology

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BLAST of CsGy3G033670 vs. NCBI nr
Match: XP_011652076.1 (PREDICTED: uncharacterized protein LOC101220824 [Cucumis sativus] >KGN59274.1 hypothetical protein Csa_3G798610 [Cucumis sativus])

HSP 1 Score: 131.0 bits (328), Expect = 1.7e-27
Identity = 58/59 (98.31%), Postives = 58/59 (98.31%), Query Frame = 0


Query: 1  MGTREVYEQKLRRGNLYHEPTTNPGLGSPRCPRCFSLLKPDPDKSEWAINPVLHGVTAV 60
          MGTREVYEQKLRRGNLYHEPT NPGLGSPRCPRCFSLLKPDPDKSEWAINPVLHGVTAV
Sbjct: 1  MGTREVYEQKLRRGNLYHEPTMNPGLGSPRCPRCFSLLKPDPDKSEWAINPVLHGVTAV 59

[Close]

BLAST of CsGy3G033670 vs. NCBI nr
Match: XP_023538973.1 (uncharacterized protein LOC111799746 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 127.1 bits (318), Expect = 2.4e-26
Identity = 56/59 (94.92%), Postives = 56/59 (94.92%), Query Frame = 0


Query: 1  MGTREVYEQKLRRGNLYHEPTTNPGLGSPRCPRCFSLLKPDPDKSEWAINPVLHGVTAV 60
          MGTREVYEQKLRRGNLYHEPT NPGLGSPRCPRCFSLLKPDPDKSEWAINPVLH  TAV
Sbjct: 1  MGTREVYEQKLRRGNLYHEPTMNPGLGSPRCPRCFSLLKPDPDKSEWAINPVLHSTTAV 59

[Close]

BLAST of CsGy3G033670 vs. NCBI nr
Match: XP_008443017.1 (PREDICTED: uncharacterized protein LOC103486742 [Cucumis melo])

HSP 1 Score: 125.6 bits (314), Expect = 7.0e-26
Identity = 55/59 (93.22%), Postives = 56/59 (94.92%), Query Frame = 0


Query: 1  MGTREVYEQKLRRGNLYHEPTTNPGLGSPRCPRCFSLLKPDPDKSEWAINPVLHGVTAV 60
          MGTREVYEQKLR GNLYHEPT NPGLGSPRCPRCFSLLKPDPDKSEWA+NPVLH VTAV
Sbjct: 1  MGTREVYEQKLRSGNLYHEPTMNPGLGSPRCPRCFSLLKPDPDKSEWAVNPVLHDVTAV 59

[Close]

BLAST of CsGy3G033670 vs. NCBI nr
Match: XP_023005917.1 (uncharacterized protein LOC111498779 [Cucurbita maxima] >XP_023005918.1 uncharacterized protein LOC111498779 [Cucurbita maxima] >XP_023005919.1 uncharacterized protein LOC111498779 [Cucurbita maxima] >XP_023005920.1 uncharacterized protein LOC111498779 [Cucurbita maxima])

HSP 1 Score: 124.8 bits (312), Expect = 1.2e-25
Identity = 55/59 (93.22%), Postives = 55/59 (93.22%), Query Frame = 0


Query: 1  MGTREVYEQKLRRGNLYHEPTTNPGLGSPRCPRCFSLLKPDPDKSEWAINPVLHGVTAV 60
          MGTREVYEQKLRRGNLYHEPT NPGLGSPRCPRCFSLLKPDPD SEWAINPVLH  TAV
Sbjct: 1  MGTREVYEQKLRRGNLYHEPTMNPGLGSPRCPRCFSLLKPDPDTSEWAINPVLHSTTAV 59

[Close]

BLAST of CsGy3G033670 vs. NCBI nr
Match: XP_022945082.1 (uncharacterized protein LOC111449402 [Cucurbita moschata] >XP_022945160.1 uncharacterized protein LOC111449402 [Cucurbita moschata] >XP_022945231.1 uncharacterized protein LOC111449402 [Cucurbita moschata] >XP_022945310.1 uncharacterized protein LOC111449402 [Cucurbita moschata])

HSP 1 Score: 123.2 bits (308), Expect = 3.5e-25
Identity = 54/59 (91.53%), Postives = 55/59 (93.22%), Query Frame = 0


Query: 1  MGTREVYEQKLRRGNLYHEPTTNPGLGSPRCPRCFSLLKPDPDKSEWAINPVLHGVTAV 60
          MGTREVYEQKLRRGNLYHEPT NPGLGSPRCPRCFSLL+PDPD SEWAINPVLH  TAV
Sbjct: 1  MGTREVYEQKLRRGNLYHEPTMNPGLGSPRCPRCFSLLQPDPDTSEWAINPVLHSTTAV 59

[Close]

BLAST of CsGy3G033670 vs. TAIR10
Match: AT2G41945.3 (unknown protein)

HSP 1 Score: 95.9 bits (237), Expect = 1.1e-20
Identity = 41/59 (69.49%), Postives = 47/59 (79.66%), Query Frame = 0


Query: 1  MGTREVYEQKLRRGNLYHEPTTNPGLGSPRCPRCFSLLKPDPDKSEWAINPVLHGVTAV 60
          MGTR+VYE+KLRRGNL ++PT NPGLGS RCPRC SLL P+ +K EW I PVLH   AV
Sbjct: 1  MGTRQVYEEKLRRGNLDYDPTMNPGLGSARCPRCLSLLNPNSEKGEWTITPVLHDAAAV 59

[Close]

BLAST of CsGy3G033670 vs. TrEMBL
Match: tr|A0A0A0LEC4|A0A0A0LEC4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G798610 PE=4 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 1.1e-27
Identity = 58/59 (98.31%), Postives = 58/59 (98.31%), Query Frame = 0


Query: 1  MGTREVYEQKLRRGNLYHEPTTNPGLGSPRCPRCFSLLKPDPDKSEWAINPVLHGVTAV 60
          MGTREVYEQKLRRGNLYHEPT NPGLGSPRCPRCFSLLKPDPDKSEWAINPVLHGVTAV
Sbjct: 1  MGTREVYEQKLRRGNLYHEPTMNPGLGSPRCPRCFSLLKPDPDKSEWAINPVLHGVTAV 59

[Close]

BLAST of CsGy3G033670 vs. TrEMBL
Match: tr|A0A1S3B6K8|A0A1S3B6K8_CUCME (uncharacterized protein LOC103486742 OS=Cucumis melo OX=3656 GN=LOC103486742 PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 4.6e-26
Identity = 55/59 (93.22%), Postives = 56/59 (94.92%), Query Frame = 0


Query: 1  MGTREVYEQKLRRGNLYHEPTTNPGLGSPRCPRCFSLLKPDPDKSEWAINPVLHGVTAV 60
          MGTREVYEQKLR GNLYHEPT NPGLGSPRCPRCFSLLKPDPDKSEWA+NPVLH VTAV
Sbjct: 1  MGTREVYEQKLRSGNLYHEPTMNPGLGSPRCPRCFSLLKPDPDKSEWAVNPVLHDVTAV 59

[Close]

BLAST of CsGy3G033670 vs. TrEMBL
Match: tr|A0A2J6K8U5|A0A2J6K8U5_LACSA (Uncharacterized protein OS=Lactuca sativa OX=4236 GN=LSAT_2X56540 PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 2.6e-21
Identity = 47/62 (75.81%), Postives = 49/62 (79.03%), Query Frame = 0


Query: 1  MGTREVYEQKLRRGNLYHEPTTNPGLGSPRCPRCFSLLKPDPDKSEWAINPVLHGVTAVV 60
          MGTREVYE+KLR GNLYHEPT NPGLG+PRCPRC SLL  D DK EW I PVLH  TAV 
Sbjct: 1  MGTREVYEEKLRTGNLYHEPTINPGLGTPRCPRCLSLLDSDSDKGEWTITPVLHDATAVA 60

Query: 61 SC 63
           C
Sbjct: 61 GC 62

[Close]

BLAST of CsGy3G033670 vs. TrEMBL
Match: tr|A0A2U1NVW9|A0A2U1NVW9_ARTAN (Uncharacterized protein OS=Artemisia annua OX=35608 GN=CTI12_AA221780 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 5.9e-21
Identity = 47/62 (75.81%), Postives = 48/62 (77.42%), Query Frame = 0


Query: 1  MGTREVYEQKLRRGNLYHEPTTNPGLGSPRCPRCFSLLKPDPDKSEWAINPVLHGVTAVV 60
          MGTREVYEQKLR GNLYHEPT  PGLG+PRCPRC SLL  D DK EW I PVLH  TAV 
Sbjct: 1  MGTREVYEQKLRTGNLYHEPTIKPGLGTPRCPRCLSLLDSDSDKGEWTITPVLHDATAVA 60

Query: 61 SC 63
           C
Sbjct: 61 GC 62

[Close]

BLAST of CsGy3G033670 vs. TrEMBL
Match: tr|A0A2U1LB51|A0A2U1LB51_ARTAN (Uncharacterized protein OS=Artemisia annua OX=35608 GN=CTI12_AA510220 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 5.9e-21
Identity = 47/62 (75.81%), Postives = 48/62 (77.42%), Query Frame = 0


Query: 1  MGTREVYEQKLRRGNLYHEPTTNPGLGSPRCPRCFSLLKPDPDKSEWAINPVLHGVTAVV 60
          MGTREVYEQKLR GNLYHEPT  PGLG+PRCPRC SLL  D DK EW I PVLH  TAV 
Sbjct: 1  MGTREVYEQKLRTGNLYHEPTIKPGLGTPRCPRCLSLLDSDSDKGEWTITPVLHDATAVA 60

Query: 61 SC 63
           C
Sbjct: 61 GC 62

The following BLAST results are available for this feature:

BLAST of CsGy3G033670 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011652076.1	1.7e-27	98.31	PREDICTED: uncharacterized protein LOC101220824 [Cucumis sativus] >KGN59274.1 hy...	[more]
XP_023538973.1	2.4e-26	94.92	uncharacterized protein LOC111799746 [Cucurbita pepo subsp. pepo]	[more]
XP_008443017.1	7.0e-26	93.22	PREDICTED: uncharacterized protein LOC103486742 [Cucumis melo]	[more]
XP_023005917.1	1.2e-25	93.22	uncharacterized protein LOC111498779 [Cucurbita maxima] >XP_023005918.1 uncharac...	[more]
XP_022945082.1	3.5e-25	91.53	uncharacterized protein LOC111449402 [Cucurbita moschata] >XP_022945160.1 unchar...	[more]

BLAST of CsGy3G033670 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G41945.3	1.1e-20	69.49	unknown protein	[more]

BLAST of CsGy3G033670 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy3G033670 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LEC4\|A0A0A0LEC4_CUCSA	1.1e-27	98.31	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G798610 PE=4 SV=1	[more]
tr\|A0A1S3B6K8\|A0A1S3B6K8_CUCME	4.6e-26	93.22	uncharacterized protein LOC103486742 OS=Cucumis melo OX=3656 GN=LOC103486742 PE=...	[more]
tr\|A0A2J6K8U5\|A0A2J6K8U5_LACSA	2.6e-21	75.81	Uncharacterized protein OS=Lactuca sativa OX=4236 GN=LSAT_2X56540 PE=4 SV=1	[more]
tr\|A0A2U1NVW9\|A0A2U1NVW9_ARTAN	5.9e-21	75.81	Uncharacterized protein OS=Artemisia annua OX=35608 GN=CTI12_AA221780 PE=4 SV=1	[more]
tr\|A0A2U1LB51\|A0A2U1LB51_ARTAN	5.9e-21	75.81	Uncharacterized protein OS=Artemisia annua OX=35608 GN=CTI12_AA510220 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009793	embryo development ending in seed dormancy
biological_process	GO:0010431	seed maturation
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy3G033670.1	CsGy3G033670.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34459:SF2	SUBFAMILY NOT NAMED	coord: 1..61
None	No IPR available	PANTHER	PTHR34459	FAMILY NOT NAMED	coord: 1..61

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy3G033670	Cla017563	Watermelon (97103) v1	cgybwmB187
CsGy3G033670	Csa3G798610	Cucumber (Chinese Long) v2	cgybcuB110
CsGy3G033670	MELO3C009602	Melon (DHL92) v3.5.1	cgybmeB184
CsGy3G033670	ClCG10G017720	Watermelon (Charleston Gray)	cgybwcgB179
CsGy3G033670	CSPI03G36220	Wild cucumber (PI 183967)	cgybcpiB111
CsGy3G033670	CmaCh06G005730	Cucurbita maxima (Rimu)	cgybcmaB428
CsGy3G033670	CmoCh06G005790	Cucurbita moschata (Rifu)	cgybcmoB402
CsGy3G033670	Lsi03G017570	Bottle gourd (USVL1VR-Ls)	cgyblsiB171
CsGy3G033670	Cp4.1LG08g09270	Cucurbita pepo (Zucchini)	cgybcpeB455
CsGy3G033670	MELO3C009602.2	Melon (DHL92) v3.6.1	cgybmedB185
CsGy3G033670	CsaV3_3G038570	Cucumber (Chinese Long) v3	cgybcucB117
CsGy3G033670	Cla97C10G200640	Watermelon (97103) v2	cgybwmbB178
CsGy3G033670	Bhi11G002093	Wax gourd	cgybwgoB213
CsGy3G033670	Carg16261	Silver-seed gourd	carcgybB0676

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy3G033670	Cucurbita maxima (Rimu)	cgybcmaB306
CsGy3G033670	Cucurbita moschata (Rifu)	cgybcmoB279
CsGy3G033670	Cucurbita pepo (Zucchini)	cgybcpeB395
CsGy3G033670	Silver-seed gourd	carcgybB0263