CsGy3G023230 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy3G023230
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	putative G3BP-like protein isoform X4
Location	Chr3 : 22865801 .. 22866332 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTAGCGGCATTGGAGGTTTTTGCCTAGCTTGCTATGTCTCTCTTTGGCTCAACCTTCCTCACTGGAACGTCGTCGCCCACGACTTTCTCTGTCAGATTTTAAAGAAGGTATCGTTCAGCTCCATAAGACCTAATTGCCGACTAACATCGCGGAAGCAAATGGTGAAGATGGTTGGTCGATTTTTCAAAATCTGTCTATTTTAGAAACTTGCATGTTTTTACTGTAGCTAAAATTGAGCAATAATTTAAAAAATTTGGTAGATTTCTACCTAATGATGTGTATTTATTAGGTCTTGGAGGCCCTCGCTTTTGATTATTTGTTTGGATTGGCTCACATGGATGGTTCTTGATGCATTTGTTGGTGGTGCCATGAATAGGAAGGGAAAGAGGGAGAGGTAGTTACCAGTCAGATGCTCCTAAGGGACGGTTTGGTTCTCATAGTTTGGGTCGAGGAAGCAGCCAAGATGGAAGCGACTATGGTCAGTTGAGAGGCAACGGTTTCCCTCAGTGGTACCACAAGGTTCAATAG

mRNA sequence

ATGTTTAGCGGCATTGGAGGTTTTTGCCTAGCTTGCTATGTCTCTCTTTGGCTCAACCTTCCTCACTGGAACGTCGTCGCCCACGACTTTCTCTGTCAGATTTTAAAGAAGGTATCGTTCAGCTCCATAAGACCTAATTGCCGACTAACATCGCGGAAGCAAATGGTGAAGATGGTCTTGGAGGCCCTCGCTTTTGATTATTTGTTTGGATTGGCTCACATGGATGGAAGGGAAAGAGGGAGAGGTAGTTACCAGTCAGATGCTCCTAAGGGACGGTTTGGTTCTCATAGTTTGGGTCGAGGAAGCAGCCAAGATGGAAGCGACTATGGTCAGTTGAGAGGCAACGGTTTCCCTCAGTGGTACCACAAGGTTCAATAG

Coding sequence (CDS)

ATGTTTAGCGGCATTGGAGGTTTTTGCCTAGCTTGCTATGTCTCTCTTTGGCTCAACCTTCCTCACTGGAACGTCGTCGCCCACGACTTTCTCTGTCAGATTTTAAAGAAGGTATCGTTCAGCTCCATAAGACCTAATTGCCGACTAACATCGCGGAAGCAAATGGTGAAGATGGTCTTGGAGGCCCTCGCTTTTGATTATTTGTTTGGATTGGCTCACATGGATGGAAGGGAAAGAGGGAGAGGTAGTTACCAGTCAGATGCTCCTAAGGGACGGTTTGGTTCTCATAGTTTGGGTCGAGGAAGCAGCCAAGATGGAAGCGACTATGGTCAGTTGAGAGGCAACGGTTTCCCTCAGTGGTACCACAAGGTTCAATAG

Protein sequence

MFSGIGGFCLACYVSLWLNLPHWNVVAHDFLCQILKKVSFSSIRPNCRLTSRKQMVKMVLEALAFDYLFGLAHMDGRERGRGSYQSDAPKGRFGSHSLGRGSSQDGSDYGQLRGNGFPQWYHKVQ

Homology

[Close]

BLAST of CsGy3G023230 vs. NCBI nr
Match: KGN57089.1 (hypothetical protein Csa_3G152650 [Cucumis sativus])

HSP 1 Score: 228.8 bits (582), Expect = 1.0e-56
Identity = 111/120 (92.50%), Postives = 113/120 (94.17%), Query Frame = 0


Query: 1   MFSGIGGFCLACYVSLWLNLPHWNVVAHDFLCQILKKVSFSSIRPNCRLTSRKQMVKMVL 60
           MFS IGGF LACYVSLWLNLPH NVVAHDFLC ILKKVSFSSIRPNCRLTSRKQMVKMV 
Sbjct: 63  MFSDIGGFGLACYVSLWLNLPHRNVVAHDFLCHILKKVSFSSIRPNCRLTSRKQMVKMVS 122

Query: 61  EALAFDYLFGLAHMDGRERGRGSYQSDAPKGRFGSHSLGRGSSQDGSDYGQLRGNGFPQW 120
           EAL FDYLFGLAHMDGRERGRGSYQ DAP+GRFGSHSLGRGSSQDGSDYGQLRGNGFP+W
Sbjct: 123 EALTFDYLFGLAHMDGRERGRGSYQLDAPRGRFGSHSLGRGSSQDGSDYGQLRGNGFPRW 182

[Close]

BLAST of CsGy3G023230 vs. NCBI nr
Match: KGN58292.1 (hypothetical protein Csa_3G608710 [Cucumis sativus])

HSP 1 Score: 110.2 bits (274), Expect = 5.3e-21
Identity = 69/141 (48.94%), Postives = 79/141 (56.03%), Query Frame = 0


Query: 5   IGGFCLACYVSLWLNLPHWNVVAHDFLCQILKKVSFS-----------------SIRPNC 64
           +GGF LACYVSL LNLPH NVVAHDFLCQILKKVS                   SI  N 
Sbjct: 1   MGGFGLACYVSLGLNLPHRNVVAHDFLCQILKKVSLHKTQLPTNIAEANGEDGWSIFQNL 60

Query: 65  RLTSRKQMVKMVLEALAFDYLFGL---AHMDGRERGRGSYQSDAPKGRFGSHSLGRGSSQ 124
            +    +  +  L  +  D+L  +   A + G    +G  +           SLGRGSSQ
Sbjct: 61  SILETCRSRRPSLLIICLDWLTWMVLDAFVGGAMNRKGKRE-----------SLGRGSSQ 120

Query: 125 DGSDYGQLRGNGFPQWYHKVQ 126
           DGSDYGQLRGNGFPQWYHKVQ
Sbjct: 121 DGSDYGQLRGNGFPQWYHKVQ 130

[Close]

BLAST of CsGy3G023230 vs. NCBI nr
Match: XP_011656769.1 (PREDICTED: putative G3BP-like protein [Cucumis sativus] >XP_011656770.1 PREDICTED: putative G3BP-like protein [Cucumis sativus] >KGN46374.1 hypothetical protein Csa_6G088020 [Cucumis sativus])

HSP 1 Score: 84.7 bits (208), Expect = 2.4e-13
Identity = 43/50 (86.00%), Postives = 45/50 (90.00%), Query Frame = 0


Query: 77  RERGRGSYQSDAPKGRFGSHSLGRGSSQDGSDYGQLRGNGFPQ-WYHKVQ 126
           R R RGSYQSDAP+GRFGS SLGRGSSQDGSDYG+LRGNGFPQ  YHKVQ
Sbjct: 400 RGRARGSYQSDAPRGRFGSRSLGRGSSQDGSDYGRLRGNGFPQRGYHKVQ 449

[Close]

BLAST of CsGy3G023230 vs. NCBI nr
Match: XP_022960141.1 (putative G3BP-like protein isoform X1 [Cucurbita moschata])

HSP 1 Score: 73.6 bits (179), Expect = 5.5e-10
Identity = 40/57 (70.18%), Postives = 43/57 (75.44%), Query Frame = 0


Query: 76  GRERGR------GSYQSDAPKGRFGSHSLGRGSSQDGSDYGQLRGNGFPQ-WYHKVQ 126
           G  RGR       SYQSDAP+GRFGS  +GRGSSQDGSDYG+LRGNGFPQ  YHK Q
Sbjct: 393 GAARGRXXXXXXXSYQSDAPRGRFGSRGVGRGSSQDGSDYGRLRGNGFPQRGYHKFQ 449

[Close]

BLAST of CsGy3G023230 vs. NCBI nr
Match: XP_023514584.1 (putative G3BP-like protein [Cucurbita pepo subsp. pepo])

HSP 1 Score: 73.6 bits (179), Expect = 5.5e-10
Identity = 40/57 (70.18%), Postives = 43/57 (75.44%), Query Frame = 0


Query: 76  GRERGR------GSYQSDAPKGRFGSHSLGRGSSQDGSDYGQLRGNGFPQ-WYHKVQ 126
           G  RGR       SYQSDAP+GRFGS  +GRGSSQDGSDYG+LRGNGFPQ  YHK Q
Sbjct: 393 GAARGRXXXXXXXSYQSDAPRGRFGSRGVGRGSSQDGSDYGRLRGNGFPQRGYHKFQ 449

[Close]

BLAST of CsGy3G023230 vs. TrEMBL
Match: tr|A0A0A0L7V2|A0A0A0L7V2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G152650 PE=4 SV=1)

HSP 1 Score: 228.8 bits (582), Expect = 6.8e-57
Identity = 111/120 (92.50%), Postives = 113/120 (94.17%), Query Frame = 0


Query: 1   MFSGIGGFCLACYVSLWLNLPHWNVVAHDFLCQILKKVSFSSIRPNCRLTSRKQMVKMVL 60
           MFS IGGF LACYVSLWLNLPH NVVAHDFLC ILKKVSFSSIRPNCRLTSRKQMVKMV 
Sbjct: 63  MFSDIGGFGLACYVSLWLNLPHRNVVAHDFLCHILKKVSFSSIRPNCRLTSRKQMVKMVS 122

Query: 61  EALAFDYLFGLAHMDGRERGRGSYQSDAPKGRFGSHSLGRGSSQDGSDYGQLRGNGFPQW 120
           EAL FDYLFGLAHMDGRERGRGSYQ DAP+GRFGSHSLGRGSSQDGSDYGQLRGNGFP+W
Sbjct: 123 EALTFDYLFGLAHMDGRERGRGSYQLDAPRGRFGSHSLGRGSSQDGSDYGQLRGNGFPRW 182

[Close]

BLAST of CsGy3G023230 vs. TrEMBL
Match: tr|A0A0A0LC60|A0A0A0LC60_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G608710 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 3.5e-21
Identity = 69/141 (48.94%), Postives = 79/141 (56.03%), Query Frame = 0


Query: 5   IGGFCLACYVSLWLNLPHWNVVAHDFLCQILKKVSFS-----------------SIRPNC 64
           +GGF LACYVSL LNLPH NVVAHDFLCQILKKVS                   SI  N 
Sbjct: 1   MGGFGLACYVSLGLNLPHRNVVAHDFLCQILKKVSLHKTQLPTNIAEANGEDGWSIFQNL 60

Query: 65  RLTSRKQMVKMVLEALAFDYLFGL---AHMDGRERGRGSYQSDAPKGRFGSHSLGRGSSQ 124
            +    +  +  L  +  D+L  +   A + G    +G  +           SLGRGSSQ
Sbjct: 61  SILETCRSRRPSLLIICLDWLTWMVLDAFVGGAMNRKGKRE-----------SLGRGSSQ 120

Query: 125 DGSDYGQLRGNGFPQWYHKVQ 126
           DGSDYGQLRGNGFPQWYHKVQ
Sbjct: 121 DGSDYGQLRGNGFPQWYHKVQ 130

[Close]

BLAST of CsGy3G023230 vs. TrEMBL
Match: tr|A0A0A0KBZ9|A0A0A0KBZ9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G088020 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 1.6e-13
Identity = 43/50 (86.00%), Postives = 45/50 (90.00%), Query Frame = 0


Query: 77  RERGRGSYQSDAPKGRFGSHSLGRGSSQDGSDYGQLRGNGFPQ-WYHKVQ 126
           R R RGSYQSDAP+GRFGS SLGRGSSQDGSDYG+LRGNGFPQ  YHKVQ
Sbjct: 400 RGRARGSYQSDAPRGRFGSRSLGRGSSQDGSDYGRLRGNGFPQRGYHKVQ 449

[Close]

BLAST of CsGy3G023230 vs. TrEMBL
Match: tr|A0A061EPC2|A0A061EPC2_THECC (Nuclear transport factor 2 family protein with RNA binding domain isoform 1 OS=Theobroma cacao OX=3641 GN=TCM_021007 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.7e-07
Identity = 40/84 (47.62%), Postives = 47/84 (55.95%), Query Frame = 0


Query: 36  KKVSFSSIRPNCRLTSRKQMVKMVLEALAFDYLFGLAHMDGRERGRGSYQSDAPKGRFGS 95
           + V     RPN  + SR  MVKM                 GR RGRGSYQ+DAP+GRFG+
Sbjct: 383 RNVYIEERRPNSFIPSRGGMVKM--------------FWTGRGRGRGSYQTDAPRGRFGA 442

Query: 96  HSLGRGSSQDGS--DYGQLRGNGF 118
            S GRG + DGS  DY + RGNGF
Sbjct: 443 RSYGRGGAYDGSERDYSRSRGNGF 452

[Close]

BLAST of CsGy3G023230 vs. TrEMBL
Match: tr|I1JP73|I1JP73_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=100787900 PE=4 SV=2)

HSP 1 Score: 63.9 bits (154), Expect = 2.9e-07
Identity = 31/50 (62.00%), Postives = 38/50 (76.00%), Query Frame = 0


Query: 70  GLAHMDGRERGRGSYQSDAPKGRFGSHSLGRGSSQDGSDYGQLRGNGFPQ 120
           G A    R RGRGSYQ+DAP+GRFG  S+GRG +QD SDY +LRG+G+ Q
Sbjct: 399 GAARGGRRGRGRGSYQADAPRGRFGGRSMGRGGNQDSSDYTRLRGDGYLQ 448

The following BLAST results are available for this feature:

BLAST of CsGy3G023230 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN57089.1	1.0e-56	92.50	hypothetical protein Csa_3G152650 [Cucumis sativus]	[more]
KGN58292.1	5.3e-21	48.94	hypothetical protein Csa_3G608710 [Cucumis sativus]	[more]
XP_011656769.1	2.4e-13	86.00	PREDICTED: putative G3BP-like protein [Cucumis sativus] >XP_011656770.1 PREDICTE...	[more]
XP_022960141.1	5.5e-10	70.18	putative G3BP-like protein isoform X1 [Cucurbita moschata]	[more]
XP_023514584.1	5.5e-10	70.18	putative G3BP-like protein [Cucurbita pepo subsp. pepo]	[more]

BLAST of CsGy3G023230 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsGy3G023230 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy3G023230 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L7V2\|A0A0A0L7V2_CUCSA	6.8e-57	92.50	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G152650 PE=4 SV=1	[more]
tr\|A0A0A0LC60\|A0A0A0LC60_CUCSA	3.5e-21	48.94	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G608710 PE=4 SV=1	[more]
tr\|A0A0A0KBZ9\|A0A0A0KBZ9_CUCSA	1.6e-13	86.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G088020 PE=4 SV=1	[more]
tr\|A0A061EPC2\|A0A061EPC2_THECC	1.7e-07	47.62	Nuclear transport factor 2 family protein with RNA binding domain isoform 1 OS=T...	[more]
tr\|I1JP73\|I1JP73_SOYBN	2.9e-07	62.00	Uncharacterized protein OS=Glycine max OX=3847 GN=100787900 PE=4 SV=2	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005829	cytosol
molecular_function	GO:0003729	mRNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy3G023230.1	CsGy3G023230.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 79..114

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy3G023230	CsaV3_3G025200	Cucumber (Chinese Long) v3	cgybcucB117

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy3G023230	Cucumber (Gy14) v2	cgybcgybB118
CsGy3G023230	Cucurbita maxima (Rimu)	cgybcmaB311
CsGy3G023230	Cucurbita maxima (Rimu)	cgybcmaB346
CsGy3G023230	Cucurbita maxima (Rimu)	cgybcmaB361
CsGy3G023230	Cucurbita maxima (Rimu)	cgybcmaB461
CsGy3G023230	Cucurbita pepo (Zucchini)	cgybcpeB306
CsGy3G023230	Cucurbita moschata (Rifu)	cgybcmoB284
CsGy3G023230	Cucurbita moschata (Rifu)	cgybcmoB318
CsGy3G023230	Cucurbita moschata (Rifu)	cgybcmoB332
CsGy3G023230	Cucurbita moschata (Rifu)	cgybcmoB429
CsGy3G023230	Cucurbita pepo (Zucchini)	cgybcpeB349
CsGy3G023230	Cucurbita pepo (Zucchini)	cgybcpeB390
CsGy3G023230	Cucurbita pepo (Zucchini)	cgybcpeB400
CsGy3G023230	Cucumber (Chinese Long) v2	cgybcuB154
CsGy3G023230	Bottle gourd (USVL1VR-Ls)	cgyblsiB222
CsGy3G023230	Bottle gourd (USVL1VR-Ls)	cgyblsiB167
CsGy3G023230	Melon (DHL92) v3.5.1	cgybmeB161
CsGy3G023230	Melon (DHL92) v3.5.1	cgybmeB186
CsGy3G023230	Melon (DHL92) v3.6.1	cgybmedB161
CsGy3G023230	Melon (DHL92) v3.6.1	cgybmedB187
CsGy3G023230	Watermelon (Charleston Gray)	cgybwcgB166
CsGy3G023230	Watermelon (Charleston Gray)	cgybwcgB237
CsGy3G023230	Watermelon (97103) v1	cgybwmB174
CsGy3G023230	Watermelon (97103) v1	cgybwmB205
CsGy3G023230	Wild cucumber (PI 183967)	cgybcpiB110
CsGy3G023230	Wild cucumber (PI 183967)	cgybcpiB156
CsGy3G023230	Silver-seed gourd	carcgybB0125
CsGy3G023230	Silver-seed gourd	carcgybB0212
CsGy3G023230	Silver-seed gourd	carcgybB0739
CsGy3G023230	Silver-seed gourd	carcgybB1009
CsGy3G023230	Cucumber (Chinese Long) v3	cgybcucB160
CsGy3G023230	Watermelon (97103) v2	cgybwmbB246
CsGy3G023230	Watermelon (97103) v2	cgybwmbB230
CsGy3G023230	Wax gourd	cgybwgoB260