CsGy3G021840 (gene) Cucumber (Gy14) v2

Overview
NameCsGy3G021840
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
DescriptionUnknown Protein
LocationChr3 : 20123326 .. 20123776 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
GTGGATTTTCATAACCCTGTTGTGCGATCTTGGCGATTCGTGGTATTAAACACAATTGTTTGAATTTGAACACAATTATGCTTGTGTAATCTAGGGGTGAAATCAAATATGTAATTATTGGAACTATTGTTGGAGATTCATGGTATTTCAATGAGTCTAGAAATAGGACTGGGAGTCCCTGATGATTAATTATTAAATAAACCAAGATTTTACCATGACTGCAATTTTAGAGAGACGCGAAAGCGAAAGCCTATGGGGTCGTTTCTGTAACTAGATAACCAACACTGAAAACCGTCTTTACAAGATTTTACTTCTGTATTTATTATTGCCTTCATTGCTGCTATTCTGGATCTCTACTTTACGGAAACAATATTATTTCTGGTGTTATTATCCCTACCTGTGCAACTATCGATTTGCACTTTTACCCCATTTGGGAAGCTGCTTTCGTTGA

mRNA sequence

GTGGATTTTCATAACCCTGTTGTGCGATCTTGGCGATTCGTGATAACCAACACTGAAAACCGTCTTTACAAGATTTTACTTCTGTATTTATTATTGCCTTCATTGCTGCTATTCTGGATCTCTACTTTACGGAAACAATATTATTTCTGGTGTTATTATCCCTACCTGTGCAACTATCGATTTGCACTTTTACCCCATTTGGGAAGCTGCTTTCGTTGA

Coding sequence (CDS)

GTGGATTTTCATAACCCTGTTGTGCGATCTTGGCGATTCGTGATAACCAACACTGAAAACCGTCTTTACAAGATTTTACTTCTGTATTTATTATTGCCTTCATTGCTGCTATTCTGGATCTCTACTTTACGGAAACAATATTATTTCTGGTGTTATTATCCCTACCTGTGCAACTATCGATTTGCACTTTTACCCCATTTGGGAAGCTGCTTTCGTTGA

Protein sequence

VDFHNPVVRSWRFVITNTENRLYKILLLYLLLPSLLLFWISTLRKQYYFWCYYPYLCNYRFALLPHLGSCFR
Homology
[Close]
BLAST of CsGy3G021840 vs. NCBI nr
Match: AFA52040.1 (PsbA (chloroplast) [Kirengeshoma palmata])

HSP 1 Score: 53.9 bits (128), Expect = 2.6e-04
Identity = 25/35 (71.43%), Postives = 27/35 (77.14%), Query Frame = 0 

Query: 38  FWISTLRKQYYFWCYYPYLCNYRFALLPHLGSCFR 73
           FWISTL KQYY  C+Y Y C+YRFALLP LGS  R
Sbjct: 99  FWISTLWKQYYLRCHYSYFCSYRFALLPDLGSGIR 133

[Close]
BLAST of CsGy3G021840 vs. TrEMBL
Match: tr|H6X0X7|H6X0X7_9ASTE (PsbA OS=Kirengeshoma palmata OX=39326 GN=psbA PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 1.7e-04
Identity = 25/35 (71.43%), Postives = 27/35 (77.14%), Query Frame = 0 

Query: 38  FWISTLRKQYYFWCYYPYLCNYRFALLPHLGSCFR 73
           FWISTL KQYY  C+Y Y C+YRFALLP LGS  R
Sbjct: 99  FWISTLWKQYYLRCHYSYFCSYRFALLPDLGSGIR 133

The following BLAST results are available for this feature:
BLAST of CsGy3G021840 vs. NCBI nr
Match NameE-valueIdentityDescription
AFA52040.12.6e-0471.43PsbA (chloroplast) [Kirengeshoma palmata][more]
BLAST of CsGy3G021840 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsGy3G021840 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsGy3G021840 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|H6X0X7|H6X0X7_9ASTE1.7e-0471.43PsbA OS=Kirengeshoma palmata OX=39326 GN=psbA PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009772 photosynthetic electron transport in photosystem II
cellular_component GO:0009507 chloroplast
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0045156 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy3G021840.1CsGy3G021840.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsGy3G021840Wild cucumber (PI 183967)cgybcpiB110
CsGy3G021840Silver-seed gourdcarcgybB0747
CsGy3G021840Silver-seed gourdcarcgybB0771
CsGy3G021840Cucumber (Chinese Long) v3cgybcucB117
CsGy3G021840Watermelon (97103) v2cgybwmbB232
CsGy3G021840Wax gourdcgybwgoB294
CsGy3G021840Cucurbita maxima (Rimu)cgybcmaB383
CsGy3G021840Cucurbita maxima (Rimu)cgybcmaB392
CsGy3G021840Cucurbita moschata (Rifu)cgybcmoB355
CsGy3G021840Cucurbita moschata (Rifu)cgybcmoB363
CsGy3G021840Melon (DHL92) v3.6.1cgybmedB177
CsGy3G021840Cucurbita pepo (Zucchini)cgybcpeB338
CsGy3G021840Cucurbita pepo (Zucchini)cgybcpeB433
CsGy3G021840Cucumber (Chinese Long) v2cgybcuB109
CsGy3G021840Bottle gourd (USVL1VR-Ls)cgyblsiB202
CsGy3G021840Melon (DHL92) v3.5.1cgybmeB176
CsGy3G021840Watermelon (Charleston Gray)cgybwcgB239
CsGy3G021840Watermelon (97103) v1cgybwmB206