CsGy3G021760 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy3G021760
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	transcription factor VOZ1 isoform X3
Location	Chr3 : 19986116 .. 19988603 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACAAATCGCAAAAAACGAACGGAGGCAATCGATCAGATGGAGTGGAGGTGACTTGGGTAGCAACAACCACATTCATTTGGACGACTTGGATAACAACAACAATTTCACCGAAACTAAAGTCCGGGTCTTATGGATTGTGTGTCAACAATTTCTATATCTTTCTTTATTGCCAACTTGCGACCCCGTCCTTCCCCATTCCACTTTCTTGCATTTCCTAATCACTTCTCTCTCCTCCACCCTTCATCTTCACAAGGGTGCGAGAGATCTCCGAGCAGGTCAGTTGAATCATTTCAGTTGCACTTCATTTCTTACTGAACTCATATGTGATCGATAACTTTTCTTTTTTATCGGGGTGTTTCTTCGTTTTGTTTTCTTTTTCCTTTCTGGGTTTTGTTTGTTTGGTCATATATTGGTACTTATCTGCTTTAGATTCAATGGAAGCTTTGATCTGATTGGTACATGGGACTTACCCATTTTGTGTATTTCTATTATACCTTGTTTTGTTTGGTGTTGATCATTTCAATTAATGGTGATCTAACAGTGCTTTGGATTTTATGTATCTCATTTGAGTATGTTCTTAATGTGTACTGGAAGTTTGATATTTTAGTTGGGAAAAAATCTAGCAATTTGGATATGGGTAGTTGTTAGGCTAAGCAAACTATTACTTTGAGATGATGGCTTATCATAATCAAACTTTTCTTATATCACTCTTTAATTGTCGATTTGCTCTTGATATTGTTACAAATTACAATTAAATAGTTTCTTAGACTATATATCAAAACTCTGAACATTCTCTGCTGCTTCCATTTTATGGTTGGAGATTTATTATACACATAAGAATTATGGTGGATGGGATTGTTATTAAGAGGAAATACTGAAAAGCGTCAATAACTTTTCATTCAAATTCACAAAACTGTAGATTAACCAACAAACCCAAGTGACAGGGGAAGAAAAAATAGTGAATGCTCTATTTGAATTAGAATTAAGCATAAGTCAATACTCAGTACTTTAGAAAATGAAACAAACAAATAAGTTGGAAAAGAGAGGTGGGGGAGAAAAAATAAAAAGAAGATTACGCTGACCTGGAAATGGAACAGCTTTTTTTAAAGAAAAAAGATCCCTAACTTCTGATTCAATCACATATTCCACCAACATCACCATTTTTCTCAATTTTTTTCTCTTCACCATTTTTTTTTTGCATTCCTTCTTTATGAATATTAATAAAAACTTCTGTCTACGGAAAAGGAATAAAGGAGCTTCAACTAGTAGCAACACTAATGGACTGAAAAATTATCTAATTGTTCCAAGACCCATATAGTTGGTAGATTTTGTACTTGCTTAAAGATATTAAATTCTATCCTTCAACTTCAACTTTCTATAACTAATATATAAAGCACTTTGATTCACAAGTCATAGATGTAAAAGGACCAGAAGAAACAAGTTGATTAGCAATTGGTGCACTCAAGTATTTTTCCATAAAATAGTGCATAGTTGAAGAAGCAAATAAGAGAGGAAGAAGAAGCAAACCATTAATTTGTGAACTTTTTTAGTGGTTATTTTTATCAGTTTTCACCATAGAATTTTTTCCCCTCATTTTTTCCTTCTAGGTACGTTCTGTTTTGCAACCTGAACGGACATTACATATAGGGTTGGTCCTGTATTGTGATTTGTTTTTCTTCGATTGCTGCTAAGATAATTTTGGTGGAAGAAAAGAGACGGATCAATGCCGAAGGGTTTGAAGAGTAAATGTCAATCTACATTTTGGATTTGAGGAGTGCAAAGTGTCTCTTTTACAAAGGTCTTCTTGAATGATTGCAATATTGCGTCCTGAGGGAATTGGCTTTAAGGATGGTTGTTTGTTTTGCTACTCTTCAGGCAAAGACACAAGCCAAAGAAGTTGAAATACTCATATGTTGGAATACCCATATGTGATGGTGCTGCAATAAGGAAATCTCCATGGAATCCTCCTGGTAAAACCTTTATGTTGCTTTGTAACTTTTTTCCATTTTCCTGATTTTTTTTGTGGTTTTATTTATTATAATTACTCATTTTCCATTGATGCTTTTTATTTTGTCCTAGTGAGTTGTATTAATTAGTGTGTATTTATAGTGATTCTTTTCATTGTTGCAGAGCTTTTTGATATTCAATTTCTTGAGGGGAGACAATCATGGAATGACTCTACTTCAACAAGCCTAGACGAGCCTTTGAGGGCGACATAAAATATAAGTATCTACAGCTTAGTTCAGGACAACACTACTTTGTTGTGTTTAGTTACATGAGTTAGATACATTGTTTAGTTTACTTAACATGGATTGTTGAGTTTTTTTTTATGGTTTTTACTGCGTTCATTTTAGTCAATGAATTTTGTTCCTAAACCTAAACATAGGAATTGTAGGCTTTCCTTTTACTATTAATCATATAGGTTTGTTGTTGGATAGGCTTGGAATTGATTCCACTAAAACTGACACTTTTCTTTAATCCCTT

mRNA sequence

ATGAACAAATCGCAAAAAACGAACGGAGGCAATCGATCAGATGGAGTGGAGGTACGTTCTGTTTTGCAACCTGAACGGACATTACATATAGGGCAAAGACACAAGCCAAAGAAGTTGAAATACTCATATGTTGGAATACCCATATGTGATGGTGCTGCAATAAGGAAATCTCCATGGAATCCTCCTGAGCTTTTTGATATTCAATTTCTTGAGGGGAGACAATCATGGAATGACTCTACTTCAACAAGCCTAGACGAGCCTTTGAGGGCGACATAAAATATAAGTATCTACAGCTTAGTTCAGGACAACACTACTTTGTTGTGTTTAGTTACATGAGTTAGATACATTGTTTAGTTTACTTAACATGGATTGTTGAGTTTTTTTTTATGGTTTTTACTGCGTTCATTTTAGTCAATGAATTTTGTTCCTAAACCTAAACATAGGAATTGTAGGCTTTCCTTTTACTATTAATCATATAGGTTTGTTGTTGGATAGGCTTGGAATTGATTCCACTAAAACTGACACTTTTCTTTAATCCCTT

Coding sequence (CDS)

ATGAACAAATCGCAAAAAACGAACGGAGGCAATCGATCAGATGGAGTGGAGGTACGTTCTGTTTTGCAACCTGAACGGACATTACATATAGGGCAAAGACACAAGCCAAAGAAGTTGAAATACTCATATGTTGGAATACCCATATGTGATGGTGCTGCAATAAGGAAATCTCCATGGAATCCTCCTGAGCTTTTTGATATTCAATTTCTTGAGGGGAGACAATCATGGAATGACTCTACTTCAACAAGCCTAGACGAGCCTTTGAGGGCGACATAA

Protein sequence

MNKSQKTNGGNRSDGVEVRSVLQPERTLHIGQRHKPKKLKYSYVGIPICDGAAIRKSPWNPPELFDIQFLEGRQSWNDSTSTSLDEPLRAT

Homology

[Close]

BLAST of CsGy3G021760 vs. NCBI nr
Match: XP_011651444.1 (PREDICTED: uncharacterized protein LOC105434894 [Cucumis sativus])

HSP 1 Score: 132.9 bits (333), Expect = 5.6e-28
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 0


Query: 32  QRHKPKKLKYSYVGIPICDGAAIRKSPWNPPELFDIQFLEGRQSWNDSTSTSLDEPLRAT 91
           QRHKPKKLKYSYVGIPICDGAAIRKSPWNPPELFDIQFLEGRQSWNDSTSTSLDEPLRAT
Sbjct: 50  QRHKPKKLKYSYVGIPICDGAAIRKSPWNPPELFDIQFLEGRQSWNDSTSTSLDEPLRAT 109

[Close]

BLAST of CsGy3G021760 vs. NCBI nr
Match: XP_022944126.1 (transcription factor VOZ1-like [Cucurbita moschata] >XP_022944127.1 transcription factor VOZ1-like [Cucurbita moschata])

HSP 1 Score: 63.5 bits (153), Expect = 4.1e-07
Identity = 32/55 (58.18%), Postives = 35/55 (63.64%), Query Frame = 0


Query: 38  KLKYSYVGIPICDGAAIRKSPWNPPELFDIQFLEGR--QSWNDSTSTSLDEPLRA 91
           K +   VGIPICDGAA RKSPWN PELFDI FLEG   + W        D+P RA
Sbjct: 297 KTRTKEVGIPICDGAATRKSPWNAPELFDISFLEGETIREW-----LYFDKPRRA 346

[Close]

BLAST of CsGy3G021760 vs. NCBI nr
Match: XP_022986305.1 (transcription factor VOZ1-like [Cucurbita maxima] >XP_022986306.1 transcription factor VOZ1-like [Cucurbita maxima])

HSP 1 Score: 63.5 bits (153), Expect = 4.1e-07
Identity = 32/55 (58.18%), Postives = 35/55 (63.64%), Query Frame = 0


Query: 38  KLKYSYVGIPICDGAAIRKSPWNPPELFDIQFLEGR--QSWNDSTSTSLDEPLRA 91
           K +   VGIPICDGAA RKSPWN PELFDI FLEG   + W        D+P RA
Sbjct: 297 KTRTKEVGIPICDGAATRKSPWNAPELFDISFLEGETIREW-----LYFDKPRRA 346

[Close]

BLAST of CsGy3G021760 vs. NCBI nr
Match: XP_023512678.1 (transcription factor VOZ1-like [Cucurbita pepo subsp. pepo] >XP_023512679.1 transcription factor VOZ1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 63.5 bits (153), Expect = 4.1e-07
Identity = 32/55 (58.18%), Postives = 35/55 (63.64%), Query Frame = 0


Query: 38  KLKYSYVGIPICDGAAIRKSPWNPPELFDIQFLEGR--QSWNDSTSTSLDEPLRA 91
           K +   VGIPICDGAA RKSPWN PELFDI FLEG   + W        D+P RA
Sbjct: 297 KTRTKEVGIPICDGAATRKSPWNAPELFDISFLEGETIREW-----LYFDKPRRA 346

[Close]

BLAST of CsGy3G021760 vs. NCBI nr
Match: XP_022947163.1 (transcription factor VOZ1-like isoform X3 [Cucurbita moschata])

HSP 1 Score: 63.2 bits (152), Expect = 5.4e-07
Identity = 32/55 (58.18%), Postives = 35/55 (63.64%), Query Frame = 0


Query: 38  KLKYSYVGIPICDGAAIRKSPWNPPELFDIQFLEGR--QSWNDSTSTSLDEPLRA 91
           K +   VGIPICDGAA RKSPWN PELFDI FLEG   + W        D+P RA
Sbjct: 267 KTQAKEVGIPICDGAATRKSPWNAPELFDISFLEGETIREW-----LYFDKPRRA 316

[Close]

BLAST of CsGy3G021760 vs. TAIR10
Match: AT1G28520.1 (vascular plant one zinc finger protein)

HSP 1 Score: 50.1 bits (118), Expect = 8.6e-07
Identity = 25/49 (51.02%), Postives = 29/49 (59.18%), Query Frame = 0


Query: 44  VGIPICDGAAIRKSPWNPPELFDIQFLEGR--QSWNDSTSTSLDEPLRA 91
           VGIP C+GAA  KSPWN PELFD+  LE    + W        D+P RA
Sbjct: 281 VGIPECEGAATAKSPWNAPELFDLTVLESETLREW-----LFFDKPRRA 324

[Close]

BLAST of CsGy3G021760 vs. TAIR10
Match: AT2G42400.1 (vascular plant one zinc finger protein 2)

HSP 1 Score: 45.1 bits (105), Expect = 2.8e-05
Identity = 21/49 (42.86%), Postives = 28/49 (57.14%), Query Frame = 0


Query: 44  VGIPICDGAAIRKSPWNPPELFDIQFLEGR--QSWNDSTSTSLDEPLRA 91
           VGIP+C+GA   K PWN  ELF ++ +EG   + W        D+P RA
Sbjct: 294 VGIPVCEGAVNTKCPWNAAELFHLELVEGETIREW-----LFFDKPRRA 337

[Close]

BLAST of CsGy3G021760 vs. Swiss-Prot
Match: sp|Q9SGQ0|VOZ1_ARATH (Transcription factor VOZ1 OS=Arabidopsis thaliana OX=3702 GN=VOZ1 PE=1 SV=1)

HSP 1 Score: 50.1 bits (118), Expect = 1.6e-05
Identity = 25/49 (51.02%), Postives = 29/49 (59.18%), Query Frame = 0


Query: 44  VGIPICDGAAIRKSPWNPPELFDIQFLEGR--QSWNDSTSTSLDEPLRA 91
           VGIP C+GAA  KSPWN PELFD+  LE    + W        D+P RA
Sbjct: 281 VGIPECEGAATAKSPWNAPELFDLTVLESETLREW-----LFFDKPRRA 324

[Close]

BLAST of CsGy3G021760 vs. Swiss-Prot
Match: sp|Q9SLB9|VOZ2_ARATH (Transcription factor VOZ2 OS=Arabidopsis thaliana OX=3702 GN=VOZ2 PE=1 SV=2)

HSP 1 Score: 45.1 bits (105), Expect = 5.0e-04
Identity = 21/49 (42.86%), Postives = 28/49 (57.14%), Query Frame = 0


Query: 44  VGIPICDGAAIRKSPWNPPELFDIQFLEGR--QSWNDSTSTSLDEPLRA 91
           VGIP+C+GA   K PWN  ELF ++ +EG   + W        D+P RA
Sbjct: 294 VGIPVCEGAVNTKCPWNAAELFHLELVEGETIREW-----LFFDKPRRA 337

[Close]

BLAST of CsGy3G021760 vs. TrEMBL
Match: tr|A0A1S3C2S3|A0A1S3C2S3_CUCME (transcription factor VOZ1-like OS=Cucumis melo OX=3656 GN=LOC103496002 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 8.0e-07
Identity = 31/55 (56.36%), Postives = 35/55 (63.64%), Query Frame = 0


Query: 38  KLKYSYVGIPICDGAAIRKSPWNPPELFDIQFLEGR--QSWNDSTSTSLDEPLRA 91
           K +   VGIPICDGAA RKSPWN PELFD+ FLEG   + W        D+P RA
Sbjct: 297 KTQAKEVGIPICDGAATRKSPWNAPELFDLTFLEGETIREW-----LYFDKPRRA 346

[Close]

BLAST of CsGy3G021760 vs. TrEMBL
Match: tr|K3XG45|K3XG45_SETIT (Uncharacterized protein OS=Setaria italica OX=4555 GN=SETIT_000864mg PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 3.4e-05
Identity = 27/55 (49.09%), Postives = 34/55 (61.82%), Query Frame = 0


Query: 38  KLKYSYVGIPICDGAAIRKSPWNPPELFDIQFLEGR--QSWNDSTSTSLDEPLRA 91
           K++  +VGIPIC+GAA  KSPWN PELFD+   EG   + W        D+P RA
Sbjct: 331 KIQGKHVGIPICEGAATSKSPWNAPELFDLYIFEGESIREW-----LFFDKPRRA 380

[Close]

BLAST of CsGy3G021760 vs. TrEMBL
Match: tr|A0A1E5VWW5|A0A1E5VWW5_9POAL (Transcription factor VOZ1 OS=Dichanthelium oligosanthes OX=888268 GN=BAE44_0009407 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 3.4e-05
Identity = 27/55 (49.09%), Postives = 34/55 (61.82%), Query Frame = 0


Query: 38  KLKYSYVGIPICDGAAIRKSPWNPPELFDIQFLEGR--QSWNDSTSTSLDEPLRA 91
           K++  +VGIPIC+GAA  KSPWN PELFD+   EG   + W        D+P RA
Sbjct: 334 KIQGKHVGIPICEGAATAKSPWNAPELFDLYIFEGESIREW-----LFFDKPRRA 383

[Close]

BLAST of CsGy3G021760 vs. TrEMBL
Match: tr|A0A2T7DGQ3|A0A2T7DGQ3_9POAL (Uncharacterized protein OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_5G156500 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 3.4e-05
Identity = 27/55 (49.09%), Postives = 34/55 (61.82%), Query Frame = 0


Query: 38  KLKYSYVGIPICDGAAIRKSPWNPPELFDIQFLEGR--QSWNDSTSTSLDEPLRA 91
           K++  +VGIPIC+GAA  KSPWN PELFD+   EG   + W        D+P RA
Sbjct: 405 KIQGKHVGIPICEGAATAKSPWNAPELFDLYIFEGESIREW-----LFFDKPRRA 454

[Close]

BLAST of CsGy3G021760 vs. TrEMBL
Match: tr|A0A2S3HRM5|A0A2S3HRM5_9POAL (Uncharacterized protein OS=Panicum hallii OX=206008 GN=PAHAL_5G156400 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 3.4e-05
Identity = 27/55 (49.09%), Postives = 34/55 (61.82%), Query Frame = 0


Query: 38  KLKYSYVGIPICDGAAIRKSPWNPPELFDIQFLEGR--QSWNDSTSTSLDEPLRA 91
           K++  +VGIPIC+GAA  KSPWN PELFD+   EG   + W        D+P RA
Sbjct: 207 KIQGKHVGIPICEGAATAKSPWNAPELFDLYIFEGESIREW-----LFFDKPRRA 256

The following BLAST results are available for this feature:

BLAST of CsGy3G021760 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011651444.1	5.6e-28	100.00	PREDICTED: uncharacterized protein LOC105434894 [Cucumis sativus]	[more]
XP_022944126.1	4.1e-07	58.18	transcription factor VOZ1-like [Cucurbita moschata] >XP_022944127.1 transcriptio...	[more]
XP_022986305.1	4.1e-07	58.18	transcription factor VOZ1-like [Cucurbita maxima] >XP_022986306.1 transcription ...	[more]
XP_023512678.1	4.1e-07	58.18	transcription factor VOZ1-like [Cucurbita pepo subsp. pepo] >XP_023512679.1 tran...	[more]
XP_022947163.1	5.4e-07	58.18	transcription factor VOZ1-like isoform X3 [Cucurbita moschata]	[more]

BLAST of CsGy3G021760 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G28520.1	8.6e-07	51.02	vascular plant one zinc finger protein	[more]
AT2G42400.1	2.8e-05	42.86	vascular plant one zinc finger protein 2	[more]

BLAST of CsGy3G021760 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9SGQ0\|VOZ1_ARATH	1.6e-05	51.02	Transcription factor VOZ1 OS=Arabidopsis thaliana OX=3702 GN=VOZ1 PE=1 SV=1	[more]
sp\|Q9SLB9\|VOZ2_ARATH	5.0e-04	42.86	Transcription factor VOZ2 OS=Arabidopsis thaliana OX=3702 GN=VOZ2 PE=1 SV=2	[more]

BLAST of CsGy3G021760 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3C2S3\|A0A1S3C2S3_CUCME	8.0e-07	56.36	transcription factor VOZ1-like OS=Cucumis melo OX=3656 GN=LOC103496002 PE=4 SV=1	[more]
tr\|K3XG45\|K3XG45_SETIT	3.4e-05	49.09	Uncharacterized protein OS=Setaria italica OX=4555 GN=SETIT_000864mg PE=4 SV=1	[more]
tr\|A0A1E5VWW5\|A0A1E5VWW5_9POAL	3.4e-05	49.09	Transcription factor VOZ1 OS=Dichanthelium oligosanthes OX=888268 GN=BAE44_00094...	[more]
tr\|A0A2T7DGQ3\|A0A2T7DGQ3_9POAL	3.4e-05	49.09	Uncharacterized protein OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_5G15650...	[more]
tr\|A0A2S3HRM5\|A0A2S3HRM5_9POAL	3.4e-05	49.09	Uncharacterized protein OS=Panicum hallii OX=206008 GN=PAHAL_5G156400 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy3G021760.1	CsGy3G021760.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..35

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy3G021760	Wax gourd	cgybwgoB294
CsGy3G021760	Cucurbita maxima (Rimu)	cgybcmaB383
CsGy3G021760	Cucurbita maxima (Rimu)	cgybcmaB392
CsGy3G021760	Cucurbita moschata (Rifu)	cgybcmoB355
CsGy3G021760	Cucurbita moschata (Rifu)	cgybcmoB363
CsGy3G021760	Melon (DHL92) v3.6.1	cgybmedB177
CsGy3G021760	Cucurbita pepo (Zucchini)	cgybcpeB338
CsGy3G021760	Cucurbita pepo (Zucchini)	cgybcpeB433
CsGy3G021760	Cucumber (Chinese Long) v2	cgybcuB109
CsGy3G021760	Bottle gourd (USVL1VR-Ls)	cgyblsiB202
CsGy3G021760	Bottle gourd (USVL1VR-Ls)	cgyblsiB212
CsGy3G021760	Melon (DHL92) v3.5.1	cgybmeB176
CsGy3G021760	Watermelon (Charleston Gray)	cgybwcgB239
CsGy3G021760	Watermelon (97103) v1	cgybwmB206
CsGy3G021760	Wild cucumber (PI 183967)	cgybcpiB110
CsGy3G021760	Silver-seed gourd	carcgybB0747
CsGy3G021760	Silver-seed gourd	carcgybB0771
CsGy3G021760	Cucumber (Chinese Long) v3	cgybcucB117
CsGy3G021760	Watermelon (97103) v2	cgybwmbB232