CsGy3G021550 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy3G021550
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 6
Location	Chr3 : 19609564 .. 19611604 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTATAGCTGTATGTCTACTGCTCCAACTCTATTGTGTAGGATGTTGTTAAAAAAAATAAAATTAACAAAACATAAAAAATTTAGGAGTGGTAGATATAGATTAATTTATTTCCCAAAGTGTTGCTAATGTAATAGGTTTTAATTAAGAGGAAGAAGGTAAGAGAAGTGCAATATGGTCATTTGAGAAAGGAATTGGGTTGGATGATGAGGTGTTGAAACATATCATGTTATTCCCTTGAATTTTAACATTTCAAGCTTTTTGGCTGTCTCCATCTTAACCTACTGTCCATCTCCTTTCAGCAAAAGAGAAGTACCATTATCAAAAATTAAATTAATTTTTTTTTGGAAAAAACACTCTCTCTCTTAACAAATTCAGTATATAATAACTCCTAAATTTTCCCCTTCTTCAATTTCTTTTTGAGGTTAAAACCAAAAAACAACAAAACATATTCACAAACCAAAATTGCCCAAAGTGAAAATTTTATATCAAAATTCAGCTGTTTCCACACAGTTTCTTTATGGGATTTCTTGCATATATGGCTTAAAAACAATGTAGGGAAACCCCAAAAGAGGTGAAGTCTTCTCATTTCCCATCATCAATCTCATCATCAAAAAATAAAAAATAAAAAATAAAACGTTTTTTTAATAAATTAATCCTTTTTTTTCCTTAAGGCTCTTCTTACACACACTTCAAGAATGGAAATTTAATAATTCCAATCAAATAAATCAAATCTTGTGTCTTAGATTTTCTTTCTTTTTGTCCACTGTCTTTCTTTTCATGACAATAACCATCTAAAATAATAATGAATAATCTCATCACCTCTCAATAACATTTTAATCCCCCCCCCCCCCCCCCCCCTCTCCCCACCACCCCCGTCCTCTCAATATTTATTTCCAACCCCTCCATGAAAGAAGAAACTAAGAAACCCTAGCTACCCAAAGAAAAAAAAATCCAAACCTTTTCCTTTCCTTCTACAAATTATAAAGATCTATACCAAAAATGGATTCAATACTCTCTGAATTTGAATCCCTAAACAACAACAACAACCAACCATTCGGAGTCGTAGTTACAAACAACACACTTCAAAACCTAGTGGTTGGTTCATCGTCTTCATCTTCATCTTCCTCGTCATCCAGTCGTTACGAGAATCAAAAGCGTAGGGATTGGAACACATTTTGTCAATACCTTAAAAATCATAGACCCCCACTTGCTCTATCAAGGTGTAGTGGAGCTCACGTTCTTGAATTCCTAAGATATTTAGATCAATTTGGTAAAACAAAAGTTCATACACCAATTTGTCCATTTTATGGTCATCCTAACCCACCTGCCCCTTGCCCTTGTCCTTTAAGACAAGCTTGGGGCAGCCTTGATGCTCTTATTGGGAGACTAAGGGCAGCTTTTGAAGAGAATGGCGGGATGCCCGAAGCTAACCCTTTTGGTGCCCGAGCTGTACGGCTTTATCTACGAGAGGTTCGTGATTTGCAATCTAAAGCAAGAGGAATTAGTTATGAGAAGAAGAAAAGAAAGCGTCCTCAGCAACAACAAATTGCTCAATCAAGTAATGGAAATTGAATCATTTTCAACTTCTTTCATTTTTCTTTCTTTTTTTTTTAATTAATTGTCTTCTTAATTATGATTGCTATTATCATGATCTTTATCTTCATTTTGCTTTTTTGCTTTTTTTCTTTTTTCTTTTTTAATCAATTCTAGGGTTAGTTTTTAAATTTCCCTAACCTAGAGGGAAAATATTATGGTTTGATTTGAAATGTTTTTTTTTTTTTTTTATGCTTTTAAGGTGTAACTCACTTATGAATTACAAATTTAATCATCAATATCATCTCTTTTCTTGAAATTTTCATGTGGGTGTTTTTTTTAATCGTGTACTTATGATATGATTGATAATATGCAAATTTAAAGGATTTATATGTTTTTAAGTCAAGTCCATAGAATATGATCATGCCTGTATATTTGAGTTTATTTTTTTTAATGAATTTGTGTACTTAGTATCATCAACCTCATCTCTTTCTTAGAATCTTAA

mRNA sequence

ATGTATAGCTGTATGTCTACTGCTCCAACTCTATTGTAGGAAGAAGGTAAGAGAAGTGCAATATGGTCATTTGAGAAAGGAATTGGGTTGGATGATGAGCAAAAGAGAATTTCTTTATGGGATTTCTTGCATATATGGCTTAAAAACAATGTAGGGAAACCCCAAAAGAGATCTATACCAAAAATGGATTCAATACTCTCTGAATTTGAATCCCTAAACAACAACAACAACCAACCATTCGGAGTCGTAGTTACAAACAACACACTTCAAAACCTAGTGGTTGGTTCATCGTCTTCATCTTCATCTTCCTCGTCATCCAGTCGTTACGAGAATCAAAAGCGTAGGGATTGGAACACATTTTGTCAATACCTTAAAAATCATAGACCCCCACTTGCTCTATCAAGGTGTAGTGGAGCTCACGTTCTTGAATTCCTAAGATATTTAGATCAATTTGGTAAAACAAAAGTTCATACACCAATTTGTCCATTTTATGGTCATCCTAACCCACCTGCCCCTTGCCCTTGTCCTTTAAGACAAGCTTGGGGCAGCCTTGATGCTCTTATTGGGAGACTAAGGGCAGCTTTTGAAGAGAATGGCGGGATGCCCGAAGCTAACCCTTTTGGTGCCCGAGCTGTACGGCTTTATCTACGAGAGGTTCGTGATTTGCAATCTAAAGCAAGAGGAATTAGTTATGAGAAGAAGAAAAGAAAGCGTCCTCAGCAACAACAAATTGCTCAATCAAAATCTTAA

Coding sequence (CDS)

ATGGATTCAATACTCTCTGAATTTGAATCCCTAAACAACAACAACAACCAACCATTCGGAGTCGTAGTTACAAACAACACACTTCAAAACCTAGTGGTTGGTTCATCGTCTTCATCTTCATCTTCCTCGTCATCCAGTCGTTACGAGAATCAAAAGCGTAGGGATTGGAACACATTTTGTCAATACCTTAAAAATCATAGACCCCCACTTGCTCTATCAAGGTGTAGTGGAGCTCACGTTCTTGAATTCCTAAGATATTTAGATCAATTTGGTAAAACAAAAGTTCATACACCAATTTGTCCATTTTATGGTCATCCTAACCCACCTGCCCCTTGCCCTTGTCCTTTAAGACAAGCTTGGGGCAGCCTTGATGCTCTTATTGGGAGACTAAGGGCAGCTTTTGAAGAGAATGGCGGGATGCCCGAAGCTAACCCTTTTGGTGCCCGAGCTGTACGGCTTTATCTACGAGAGGTTCGTGATTTGCAATCTAAAGCAAGAGGAATTAGTTATGAGAAGAAGAAAAGAAAGCGTCCTCAGCAACAACAAATTGCTCAATCAAAATCTTAA

Protein sequence

MDSILSEFESLNNNNNQPFGVVVTNNTLQNLVVGSSSSSSSSSSSSRYENQKRRDWNTFCQYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKRPQQQQIAQSKS

Homology

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BLAST of CsGy3G021550 vs. NCBI nr
Match: XP_011651439.1 (PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3 isoform X2 [Cucumis sativus])

HSP 1 Score: 248.1 bits (632), Expect = 2.5e-62
Identity = 178/186 (95.70%), Postives = 178/186 (95.70%), Query Frame = 0


Query: 1   MDSILSEFESLNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRDWNTFC 60
           MDSILSEFESLNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRDWNTFC
Sbjct: 1   MDSILSEFESLNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRDWNTFC 60

Query: 61  QYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNXXXXXXXXLRQAW 120
           QYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNXXXXXXXXLRQAW
Sbjct: 61  QYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNXXXXXXXXLRQAW 120

Query: 121 GSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKRPQQ 180
           GSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKK       
Sbjct: 121 GSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKXXXXXXX 180

Query: 181 QQIAQS 187
            QIAQS
Sbjct: 181 XQIAQS 186

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BLAST of CsGy3G021550 vs. NCBI nr
Match: KGN57902.1 (hypothetical protein Csa_3G383780 [Cucumis sativus])

HSP 1 Score: 247.7 bits (631), Expect = 3.2e-62
Identity = 178/188 (94.68%), Postives = 179/188 (95.21%), Query Frame = 0


Query: 1   MDSILSEFESLNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRDWNTFC 60
           MDSILSEFESLNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRDWNTFC
Sbjct: 1   MDSILSEFESLNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRDWNTFC 60

Query: 61  QYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNXXXXXXXXLRQAW 120
           QYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNXXXXXXXXLRQAW
Sbjct: 61  QYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNXXXXXXXXLRQAW 120

Query: 121 GSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKRPQQ 180
           GSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKK       
Sbjct: 121 GSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKXXXXXXX 180

Query: 181 QQIAQSKS 189
            QIAQS +
Sbjct: 181 XQIAQSSN 188

[Close]

BLAST of CsGy3G021550 vs. NCBI nr
Match: XP_008447416.1 (PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like [Cucumis melo])

HSP 1 Score: 247.7 bits (631), Expect = 3.2e-62
Identity = 178/188 (94.68%), Postives = 179/188 (95.21%), Query Frame = 0


Query: 1   MDSILSEFESLNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRDWNTFC 60
           MDSILSEFESLNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRDWNTFC
Sbjct: 1   MDSILSEFESLNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRDWNTFC 60

Query: 61  QYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNXXXXXXXXLRQAW 120
           QYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNXXXXXXXXLRQAW
Sbjct: 61  QYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNXXXXXXXXLRQAW 120

Query: 121 GSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKRPQQ 180
           GSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKK       
Sbjct: 121 GSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKXXXXXXX 180

Query: 181 QQIAQSKS 189
            QIAQS +
Sbjct: 181 XQIAQSSN 188

[Close]

BLAST of CsGy3G021550 vs. NCBI nr
Match: XP_004152052.2 (PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 isoform X1 [Cucumis sativus])

HSP 1 Score: 246.1 bits (627), Expect = 9.3e-62
Identity = 177/187 (94.65%), Postives = 178/187 (95.19%), Query Frame = 0


Query: 1   MDSILSEFESLNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRDWNTFC 60
           MDSILSEFESLNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRDWNTFC
Sbjct: 1   MDSILSEFESLNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRDWNTFC 60

Query: 61  QYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNXXXXXXXXLRQAW 120
           QYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNXXXXXXXXLRQAW
Sbjct: 61  QYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNXXXXXXXXLRQAW 120

Query: 121 GSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKRPQQ 180
           GSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKK       
Sbjct: 121 GSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKXXXXXXX 180

Query: 181 QQIAQSK 188
             IAQS+
Sbjct: 181 XXIAQSR 187

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BLAST of CsGy3G021550 vs. NCBI nr
Match: XP_018827112.1 (PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like [Juglans regia])

HSP 1 Score: 243.0 bits (619), Expect = 7.9e-61
Identity = 125/129 (96.90%), Postives = 127/129 (98.45%), Query Frame = 0


Query: 53  RRDWNTFCQYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNXXXXX 112
           RRDWNTF QYLKNHRPPL+LSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNXXXXX
Sbjct: 49  RRDWNTFGQYLKNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNXXXXX 108

Query: 113 XXXLRQAWGSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEK 172
           XXXLRQAWGSLDALIGRLRAAFEENGG PEANPFGARAVRLYLREVRDLQSKARGISYEK
Sbjct: 109 XXXLRQAWGSLDALIGRLRAAFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEK 168

Query: 173 KKRKRPQQQ 182
           KKRKRP+QQ
Sbjct: 169 KKRKRPRQQ 177

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BLAST of CsGy3G021550 vs. TAIR10
Match: AT3G23290.2 (Protein of unknown function (DUF640))

HSP 1 Score: 216.9 bits (551), Expect = 1.1e-56
Identity = 101/119 (84.87%), Postives = 106/119 (89.08%), Query Frame = 0


Query: 53  RRDWNTFCQYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNXXXXX 112
           RRDWNTF QYL+NHRPPL+LSRCSGAHVLEFLRYLDQFGKTKVHT +CPF+GHPN     
Sbjct: 54  RRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTHLCPFFGHPNPPAPC 113

Query: 113 XXXLRQAWGSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYE 172
              LRQAWGSLDALIGRLRAAFEENGG PE NPFGARAVRLYLREVRD Q+KARGISYE
Sbjct: 114 ACPLRQAWGSLDALIGRLRAAFEENGGSPETNPFGARAVRLYLREVRDSQAKARGISYE 172

[Close]

BLAST of CsGy3G021550 vs. TAIR10
Match: AT2G31160.1 (Protein of unknown function (DUF640))

HSP 1 Score: 215.3 bits (547), Expect = 3.2e-56
Identity = 109/119 (91.60%), Postives = 113/119 (94.96%), Query Frame = 0


Query: 53  RRDWNTFCQYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNXXXXX 112
           RRDWNTF QYL+NHRPPL+LSRCSGAHVLEFLRYLDQFGKTKVHT IC FYGHP XXXXX
Sbjct: 60  RRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTNICHFYGHPXXXXXX 119

Query: 113 XXXLRQAWGSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYE 172
           XXXLRQAWGSLDALIGRLRAAFEENGG PE NPFGARAVRLYLREVRD+QSKARG+SYE
Sbjct: 120 XXXLRQAWGSLDALIGRLRAAFEENGGKPETNPFGARAVRLYLREVRDMQSKARGVSYE 178

[Close]

BLAST of CsGy3G021550 vs. TAIR10
Match: AT1G07090.1 (Protein of unknown function (DUF640))

HSP 1 Score: 209.5 bits (532), Expect = 1.8e-54
Identity = 96/126 (76.19%), Postives = 108/126 (85.71%), Query Frame = 0


Query: 53  RRDWNTFCQYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNXXXXX 112
           RRDWNTF QYLKNH+PPLALSRCSGAHV+EFL+YLDQFGKTKVH   CP++GH       
Sbjct: 37  RRDWNTFLQYLKNHKPPLALSRCSGAHVIEFLKYLDQFGKTKVHVAACPYFGHQQPPSPC 96

Query: 113 XXXLRQAWGSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEK 172
              L+QAWGSLDALIGRLRAA+EENGG P++NPF ARAVR+YLREVR+ Q+KARGI YEK
Sbjct: 97  SCPLKQAWGSLDALIGRLRAAYEENGGRPDSNPFAARAVRIYLREVRESQAKARGIPYEK 156

Query: 173 KKRKRP 179
           KKRKRP
Sbjct: 157 KKRKRP 162

[Close]

BLAST of CsGy3G021550 vs. TAIR10
Match: AT5G28490.1 (Protein of unknown function (DUF640))

HSP 1 Score: 204.9 bits (520), Expect = 4.3e-53
Identity = 100/120 (83.33%), Postives = 108/120 (90.00%), Query Frame = 0


Query: 53  RRDWNTFCQYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNXXXXX 112
           RRDWNTFCQYL+NHRPPL+L  CSGAHVLEFLRYLDQFGKTKVH   C F+G PN   XX
Sbjct: 31  RRDWNTFCQYLRNHRPPLSLPSCSGAHVLEFLRYLDQFGKTKVHHQNCAFFGLPNPPAXX 90

Query: 113 XXXLRQAWGSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEK 172
           XXXLRQAWGSLDALIGRLRAA+EENGG PEANPFG+RAVRL+LREVRD Q+KARG+SYEK
Sbjct: 91  XXXLRQAWGSLDALIGRLRAAYEENGGPPEANPFGSRAVRLFLREVRDFQAKARGVSYEK 150

[Close]

BLAST of CsGy3G021550 vs. TAIR10
Match: AT3G04510.1 (Protein of unknown function (DUF640))

HSP 1 Score: 201.8 bits (512), Expect = 3.7e-52
Identity = 101/135 (74.81%), Postives = 117/135 (86.67%), Query Frame = 0


Query: 53  RRDWNTFCQYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNXXXXX 112
           RRDWNTFCQYL+NH PPL+L+ CSGAHVL+FLRYLDQFGKTKVH   C F+G PN   XX
Sbjct: 39  RRDWNTFCQYLRNHHPPLSLASCSGAHVLDFLRYLDQFGKTKVHHQNCAFFGLPNPPAXX 98

Query: 113 XXXLRQAWGSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEK 172
           XXXLRQAWGSLDALIGRLRAA+EENGG PE +PFG+R+VR++LREVRD Q+K+RG+SYE 
Sbjct: 99  XXXLRQAWGSLDALIGRLRAAYEENGGAPETSPFGSRSVRIFLREVRDFQAKSRGVSYE- 158

Query: 173 KKRKRPQQQQIAQSK 188
           KKRKR   +QI QS+
Sbjct: 159 KKRKRVNNKQITQSQ 172

[Close]

BLAST of CsGy3G021550 vs. Swiss-Prot
Match: sp|Q9LW68|LSH4_ARATH (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 OS=Arabidopsis thaliana OX=3702 GN=LSH4 PE=1 SV=1)

HSP 1 Score: 216.9 bits (551), Expect = 2.0e-55
Identity = 101/119 (84.87%), Postives = 106/119 (89.08%), Query Frame = 0


Query: 53  RRDWNTFCQYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNXXXXX 112
           RRDWNTF QYL+NHRPPL+LSRCSGAHVLEFLRYLDQFGKTKVHT +CPF+GHPN     
Sbjct: 54  RRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTHLCPFFGHPNPPAPC 113

Query: 113 XXXLRQAWGSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYE 172
              LRQAWGSLDALIGRLRAAFEENGG PE NPFGARAVRLYLREVRD Q+KARGISYE
Sbjct: 114 ACPLRQAWGSLDALIGRLRAAFEENGGSPETNPFGARAVRLYLREVRDSQAKARGISYE 172

[Close]

BLAST of CsGy3G021550 vs. Swiss-Prot
Match: sp|A2XAV5|G1L6_ORYSI (Protein G1-like6 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_09389 PE=3 SV=1)

HSP 1 Score: 216.5 bits (550), Expect = 2.6e-55
Identity = 106/119 (89.08%), Postives = 115/119 (96.64%), Query Frame = 0


Query: 53  RRDWNTFCQYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNXXXXX 112
           RRDWNTF QYL+NHRPPL+LSRCSGAHVLEFL+Y+DQFGKTKVHTP+CPFYGHPNXXXXX
Sbjct: 86  RRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLKYMDQFGKTKVHTPVCPFYGHPNXXXXX 145

Query: 113 XXXLRQAWGSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYE 172
           XXXLRQAWGSLDALIGRLRAA+EENGG PE NPFGARAVRLYLREVR+ Q++ARGISYE
Sbjct: 146 XXXLRQAWGSLDALIGRLRAAYEENGGTPEMNPFGARAVRLYLREVRETQARARGISYE 204

[Close]

BLAST of CsGy3G021550 vs. Swiss-Prot
Match: sp|Q6K5X1|G1L6_ORYSJ (Protein G1-like6 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L6 PE=1 SV=1)

HSP 1 Score: 216.5 bits (550), Expect = 2.6e-55
Identity = 106/119 (89.08%), Postives = 115/119 (96.64%), Query Frame = 0


Query: 53  RRDWNTFCQYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNXXXXX 112
           RRDWNTF QYL+NHRPPL+LSRCSGAHVLEFL+Y+DQFGKTKVHTP+CPFYGHPNXXXXX
Sbjct: 86  RRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLKYMDQFGKTKVHTPVCPFYGHPNXXXXX 145

Query: 113 XXXLRQAWGSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYE 172
           XXXLRQAWGSLDALIGRLRAA+EENGG PE NPFGARAVRLYLREVR+ Q++ARGISYE
Sbjct: 146 XXXLRQAWGSLDALIGRLRAAYEENGGTPEMNPFGARAVRLYLREVRETQARARGISYE 204

[Close]

BLAST of CsGy3G021550 vs. Swiss-Prot
Match: sp|O82268|LSH3_ARATH (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3 OS=Arabidopsis thaliana OX=3702 GN=LSH3 PE=1 SV=1)

HSP 1 Score: 215.3 bits (547), Expect = 5.8e-55
Identity = 109/119 (91.60%), Postives = 113/119 (94.96%), Query Frame = 0


Query: 53  RRDWNTFCQYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNXXXXX 112
           RRDWNTF QYL+NHRPPL+LSRCSGAHVLEFLRYLDQFGKTKVHT IC FYGHP XXXXX
Sbjct: 60  RRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTNICHFYGHPXXXXXX 119

Query: 113 XXXLRQAWGSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYE 172
           XXXLRQAWGSLDALIGRLRAAFEENGG PE NPFGARAVRLYLREVRD+QSKARG+SYE
Sbjct: 120 XXXLRQAWGSLDALIGRLRAAFEENGGKPETNPFGARAVRLYLREVRDMQSKARGVSYE 178

[Close]

BLAST of CsGy3G021550 vs. Swiss-Prot
Match: sp|Q9LMK2|LSH6_ARATH (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 6 OS=Arabidopsis thaliana OX=3702 GN=LSH6 PE=1 SV=1)

HSP 1 Score: 209.5 bits (532), Expect = 3.2e-53
Identity = 96/126 (76.19%), Postives = 108/126 (85.71%), Query Frame = 0


Query: 53  RRDWNTFCQYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNXXXXX 112
           RRDWNTF QYLKNH+PPLALSRCSGAHV+EFL+YLDQFGKTKVH   CP++GH       
Sbjct: 37  RRDWNTFLQYLKNHKPPLALSRCSGAHVIEFLKYLDQFGKTKVHVAACPYFGHQQPPSPC 96

Query: 113 XXXLRQAWGSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEK 172
              L+QAWGSLDALIGRLRAA+EENGG P++NPF ARAVR+YLREVR+ Q+KARGI YEK
Sbjct: 97  SCPLKQAWGSLDALIGRLRAAYEENGGRPDSNPFAARAVRIYLREVRESQAKARGIPYEK 156

Query: 173 KKRKRP 179
           KKRKRP
Sbjct: 157 KKRKRP 162

[Close]

BLAST of CsGy3G021550 vs. TrEMBL
Match: tr|A0A1S3BHE8|A0A1S3BHE8_CUCME (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like OS=Cucumis melo OX=3656 GN=LOC103489869 PE=4 SV=1)

HSP 1 Score: 247.7 bits (631), Expect = 2.1e-62
Identity = 178/188 (94.68%), Postives = 179/188 (95.21%), Query Frame = 0


Query: 1   MDSILSEFESLNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRDWNTFC 60
           MDSILSEFESLNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRDWNTFC
Sbjct: 1   MDSILSEFESLNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRDWNTFC 60

Query: 61  QYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNXXXXXXXXLRQAW 120
           QYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNXXXXXXXXLRQAW
Sbjct: 61  QYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNXXXXXXXXLRQAW 120

Query: 121 GSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKRPQQ 180
           GSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKK       
Sbjct: 121 GSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKXXXXXXX 180

Query: 181 QQIAQSKS 189
            QIAQS +
Sbjct: 181 XQIAQSSN 188

[Close]

BLAST of CsGy3G021550 vs. TrEMBL
Match: tr|A0A0A0LB62|A0A0A0LB62_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G383780 PE=4 SV=1)

HSP 1 Score: 247.7 bits (631), Expect = 2.1e-62
Identity = 178/188 (94.68%), Postives = 179/188 (95.21%), Query Frame = 0


Query: 1   MDSILSEFESLNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRDWNTFC 60
           MDSILSEFESLNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRDWNTFC
Sbjct: 1   MDSILSEFESLNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRDWNTFC 60

Query: 61  QYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNXXXXXXXXLRQAW 120
           QYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNXXXXXXXXLRQAW
Sbjct: 61  QYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNXXXXXXXXLRQAW 120

Query: 121 GSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKRPQQ 180
           GSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKK       
Sbjct: 121 GSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKXXXXXXX 180

Query: 181 QQIAQSKS 189
            QIAQS +
Sbjct: 181 XQIAQSSN 188

[Close]

BLAST of CsGy3G021550 vs. TrEMBL
Match: tr|A0A2I4F639|A0A2I4F639_9ROSI (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like OS=Juglans regia OX=51240 GN=LOC108995899 PE=4 SV=1)

HSP 1 Score: 243.0 bits (619), Expect = 5.2e-61
Identity = 125/129 (96.90%), Postives = 127/129 (98.45%), Query Frame = 0


Query: 53  RRDWNTFCQYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNXXXXX 112
           RRDWNTF QYLKNHRPPL+LSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNXXXXX
Sbjct: 49  RRDWNTFGQYLKNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNXXXXX 108

Query: 113 XXXLRQAWGSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEK 172
           XXXLRQAWGSLDALIGRLRAAFEENGG PEANPFGARAVRLYLREVRDLQSKARGISYEK
Sbjct: 109 XXXLRQAWGSLDALIGRLRAAFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEK 168

Query: 173 KKRKRPQQQ 182
           KKRKRP+QQ
Sbjct: 169 KKRKRPRQQ 177

[Close]

BLAST of CsGy3G021550 vs. TrEMBL
Match: tr|A0A2R6QSD1|A0A2R6QSD1_ACTCH (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS like OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc14649 PE=4 SV=1)

HSP 1 Score: 241.5 bits (615), Expect = 1.5e-60
Identity = 126/138 (91.30%), Postives = 132/138 (95.65%), Query Frame = 0


Query: 53  RRDWNTFCQYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNXXXXX 112
           RRDWNTF QYLKNHRPPL+L RCSGAHVLEFLRYLDQFGKTK+HTPICPFYGHPNXXXXX
Sbjct: 54  RRDWNTFGQYLKNHRPPLSLPRCSGAHVLEFLRYLDQFGKTKIHTPICPFYGHPNXXXXX 113

Query: 113 XXXLRQAWGSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEK 172
           XXXL+QAWGSLDALIGRLRAAFEENGG PEANPFGARAVRLYLREVRDLQSKARGISYEK
Sbjct: 114 XXXLKQAWGSLDALIGRLRAAFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEK 173

Query: 173 KKRKRPQQQ---QIAQSK 188
           KKRKRPQQQ   Q++QS+
Sbjct: 174 KKRKRPQQQPSSQLSQSQ 191

[Close]

BLAST of CsGy3G021550 vs. TrEMBL
Match: tr|A0A2P6PV72|A0A2P6PV72_ROSCH (Putative ALOG domain-containing protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr6g0287901 PE=4 SV=1)

HSP 1 Score: 238.8 bits (608), Expect = 9.8e-60
Identity = 124/130 (95.38%), Postives = 125/130 (96.15%), Query Frame = 0


Query: 53  RRDWNTFCQYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNXXXXX 112
           RRDWNTF QYLKNHRPPL+LSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNXXXXX
Sbjct: 65  RRDWNTFGQYLKNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNXXXXX 124

Query: 113 XXXLRQAWGSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEK 172
           XXXLRQAWGSLDALIGRLRAAFEENGG PEANPFGARAVRLYLREVRDLQSKARGISYEK
Sbjct: 125 XXXLRQAWGSLDALIGRLRAAFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEK 184

Query: 173 KKRKRPQQQQ 183
           KKRKRP   Q
Sbjct: 185 KKRKRPPLPQ 194

The following BLAST results are available for this feature:

BLAST of CsGy3G021550 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011651439.1	2.5e-62	95.70	PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3 isoform X2 [Cucumis sativu...	[more]
KGN57902.1	3.2e-62	94.68	hypothetical protein Csa_3G383780 [Cucumis sativus]	[more]
XP_008447416.1	3.2e-62	94.68	PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like [Cucumis melo]	[more]
XP_004152052.2	9.3e-62	94.65	PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 isoform X1 [Cucumis sativu...	[more]
XP_018827112.1	7.9e-61	96.90	PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like [Juglans regia]	[more]

BLAST of CsGy3G021550 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G23290.2	1.1e-56	84.87	Protein of unknown function (DUF640)	[more]
AT2G31160.1	3.2e-56	91.60	Protein of unknown function (DUF640)	[more]
AT1G07090.1	1.8e-54	76.19	Protein of unknown function (DUF640)	[more]
AT5G28490.1	4.3e-53	83.33	Protein of unknown function (DUF640)	[more]
AT3G04510.1	3.7e-52	74.81	Protein of unknown function (DUF640)	[more]

BLAST of CsGy3G021550 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9LW68\|LSH4_ARATH	2.0e-55	84.87	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 OS=Arabidopsis thaliana OX=3702 GN=LS...	[more]
sp\|A2XAV5\|G1L6_ORYSI	2.6e-55	89.08	Protein G1-like6 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_09389 PE=3 SV=1	[more]
sp\|Q6K5X1\|G1L6_ORYSJ	2.6e-55	89.08	Protein G1-like6 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L6 PE=1 SV=1	[more]
sp\|O82268\|LSH3_ARATH	5.8e-55	91.60	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3 OS=Arabidopsis thaliana OX=3702 GN=LS...	[more]
sp\|Q9LMK2\|LSH6_ARATH	3.2e-53	76.19	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 6 OS=Arabidopsis thaliana OX=3702 GN=LS...	[more]

BLAST of CsGy3G021550 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BHE8\|A0A1S3BHE8_CUCME	2.1e-62	94.68	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A0A0LB62\|A0A0A0LB62_CUCSA	2.1e-62	94.68	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G383780 PE=4 SV=1	[more]
tr\|A0A2I4F639\|A0A2I4F639_9ROSI	5.2e-61	96.90	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like OS=Juglans regia OX=51240 GN=LOC...	[more]
tr\|A0A2R6QSD1\|A0A2R6QSD1_ACTCH	1.5e-60	91.30	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS like OS=Actinidia chinensis var. chinen...	[more]
tr\|A0A2P6PV72\|A0A2P6PV72_ROSCH	9.8e-60	95.38	Putative ALOG domain-containing protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_C...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR006936	ALOG_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009299	mRNA transcription
biological_process	GO:0009416	response to light stimulus
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy3G021550.1	CsGy3G021550.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006936	ALOG domain	PFAM	PF04852	DUF640	coord: 37..160 e-value: 1.8E-66 score: 222.0
IPR006936	ALOG domain	PROSITE	PS51697	ALOG	coord: 47..174 score: 84.496
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 166..188
None	No IPR available	PANTHER	PTHR31165	FAMILY NOT NAMED	coord: 33..186
None	No IPR available	PANTHER	PTHR31165:SF36	PROTEIN LIGHT-DEPENDENT SHORT HYPOCOTYLS 3	coord: 33..186

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy3G021550	Lsi05G017360	Bottle gourd (USVL1VR-Ls)	cgyblsiB212

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy3G021550	Cucurbita maxima (Rimu)	cgybcmaB383
CsGy3G021550	Cucurbita maxima (Rimu)	cgybcmaB392
CsGy3G021550	Cucurbita moschata (Rifu)	cgybcmoB355
CsGy3G021550	Cucurbita moschata (Rifu)	cgybcmoB363
CsGy3G021550	Melon (DHL92) v3.6.1	cgybmedB177
CsGy3G021550	Cucurbita pepo (Zucchini)	cgybcpeB338
CsGy3G021550	Cucurbita pepo (Zucchini)	cgybcpeB433
CsGy3G021550	Cucumber (Chinese Long) v2	cgybcuB109
CsGy3G021550	Bottle gourd (USVL1VR-Ls)	cgyblsiB202
CsGy3G021550	Melon (DHL92) v3.5.1	cgybmeB176
CsGy3G021550	Watermelon (Charleston Gray)	cgybwcgB239
CsGy3G021550	Watermelon (97103) v1	cgybwmB206
CsGy3G021550	Wild cucumber (PI 183967)	cgybcpiB110
CsGy3G021550	Silver-seed gourd	carcgybB0747
CsGy3G021550	Silver-seed gourd	carcgybB0771
CsGy3G021550	Cucumber (Chinese Long) v3	cgybcucB117
CsGy3G021550	Watermelon (97103) v2	cgybwmbB232
CsGy3G021550	Wax gourd	cgybwgoB294