CsGy3G020780 (gene) Cucumber (Gy14) v2

Overview
NameCsGy3G020780
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
Descriptionremorin
LocationChr3 : 18118523 .. 18120232 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATGTCACAACGAAGGTGGTTAAAGAGGGAGGTGAATGTGGATAATGAACATAAGGATGCTATCGAGGTAAGTAGTTAAGTTTTGACAAAATTTGTTGTATGAGTTTCTGTATAACTCTTACGTAGTTTAGCATTATTGTTGGATTTATGACTTTCTTAGGTCTCTAAAGAAAAAGAAGATACTTGTGAGTCTAAATGCCACTACCTTTGAAGACAATACTTAGATTTGTTGAAAAGGTAATGGACAAAGATTCAGACATTCGTTACCAAACTATCAATCACGTTATTTGGTATCAGTAGGAAGACTTGTGTTCTTCACAAAGATATTATTGATTTCTGTAACATGCGAGAAGTCAAGACTTTCACATTGGTGGCATATATGGTGTAAGTACTCATTCGTCAACTCTAGACTTTCTATATAAGTGTTCCTTTATTGAATTTTCCATCCTTCTTAGATATTTACATTGACAAAATGTTTCAAATTACATCTTCATTGACCCATCCCTTATATCAGTTGGTCACAATATCCAAGAAGTTAGAGCTCGCAATCTATGTAGTGGATTAATGGCTTCAAAACAAAACTAACTCGTTCTGAGTGTATTTAATCCCGAGTAAGTAATAAAATATACTAATCAATTCATTAAATTGTGTTGCTTCTTCTTCCATTAATATTGAAACACATAACTCATACTTTAATGTGCTCTCCATCTAGCTTGATTCATATTATGTTTCTTTAGAAAATAAAATAAGCTATAGGTGATTTGTTTGTTTAAATTGAATCTTAGGATTTTAGATTATGTTAGGGCAATTTGTTTCTTTTTATTGAATTTTAGGATTTTAGATCATATGATGTTTTTTTGAATTAAATTGTATTGCTTCTTGTTTGATTGATATTGAGACACATTGATATTGATATTAGAGTTTATTGTATACCTTTAGAGTACAATAGATTATGAAATACAAATACAAAAGATTATCTCGTAGGGAGTAATCATTCTCTTTTGGTTATCAAGAAATAGCATCGTCTGACGTGAAATCTAGTGCTTTGTATCTCTGTAGCCTGTGTGAAAGAAATTACCAATTCAAAATTCTAACAATTGGATGATAAACAAGTTTAATTTCTTTTGCCAACAAAACAAAGCAAAACAAAAGTCACAGACTTTAAATTAGTAAATTTGTTTTGCCTTCATCAATGTCATATTTGTCGTTTCTTTCGTTTGAGAGTTTATTGTATACCTTTAGAGTACACTAAAATCAATATAGAAGAAGAATATCTGAATTCTTCCTCACACCCGACAACTTTTCTTATTGTTTCTTTCAATATTCCTATGTATACTACTCTCCTTTGATGGTTCCTCAGTTTGGATAGCTTGTATGCTTAGAAACATGCATGGAGCTTCAGTCTCTATTCTCTAATGAATATTTGGAACCATACCTATGATTCTTTGTAATTTTATTAGTGTTGTAATGTAAACAAAGGCACACATTATTATTATTATTATTATCGTGTTCTCTTATGCAGAGGTTCCAGAAGTTGCTGAGCCCAAAAGCATTGAGGGCTCTGTAAACAGAGGTCAAATTACAAAGAAAAGCAAAATGGTTGGGAAACACATATATGTCGTGCTACCAAATTTTGCAATACAGAAGAAGTTGTTTCTCATTAAAGCTTGGGAAGAAAGTGAAAAGTCCAAGAGAGAGAACCAGTAA

mRNA sequence

ATGAATGTCACAACGAAGGTGGTTAAAGAGGGAGAGGTTCCAGAAGTTGCTGAGCCCAAAAGCATTGAGGGCTCTGTAAACAGAGGTCAAATTACAAAGAAAAGCAAAATGGTTGGGAAACACATATATGTCGTGCTACCAAATTTTGCAATACAGAAGAAGTTGTTTCTCATTAAAGCTTGGGAAGAAAGTGAAAAGTCCAAGAGAGAGAACCAGTAA

Coding sequence (CDS)

ATGAATGTCACAACGAAGGTGGTTAAAGAGGGAGAGGTTCCAGAAGTTGCTGAGCCCAAAAGCATTGAGGGCTCTGTAAACAGAGGTCAAATTACAAAGAAAAGCAAAATGGTTGGGAAACACATATATGTCGTGCTACCAAATTTTGCAATACAGAAGAAGTTGTTTCTCATTAAAGCTTGGGAAGAAAGTGAAAAGTCCAAGAGAGAGAACCAGTAA

Protein sequence

MNVTTKVVKEGEVPEVAEPKSIEGSVNRGQITKKSKMVGKHIYVVLPNFAIQKKLFLIKAWEESEKSKRENQ
Homology
[Close]
BLAST of CsGy3G020780 vs. NCBI nr
Match: XP_008465865.1 (PREDICTED: remorin [Cucumis melo])

HSP 1 Score: 54.7 bits (130), Expect = 1.5e-04
Identity = 33/60 (55.00%), Postives = 37/60 (61.67%), Query Frame = 0 

Query: 12 EVPEVAEPKSIEGSVNRGQITKKSKMVGKHIYVVLPNFAIQKKLFLIKAWEESEKSKREN 71
          +VPEVA+PKS EGSVNR                VL   A +K+L LIKAWEESEKSK EN
Sbjct: 54 KVPEVADPKSTEGSVNRD--------------AVLAKVATEKRLSLIKAWEESEKSKAEN 99

[Close]
BLAST of CsGy3G020780 vs. NCBI nr
Match: XP_022159488.1 (remorin-like [Momordica charantia])

HSP 1 Score: 53.5 bits (127), Expect = 3.4e-04
Identity = 32/60 (53.33%), Postives = 36/60 (60.00%), Query Frame = 0 

Query: 12 EVPEVAEPKSIEGSVNRGQITKKSKMVGKHIYVVLPNFAIQKKLFLIKAWEESEKSKREN 71
          +VPE AEPKS EGSVNR                VL   A +K++ LIKAWEESEKSK EN
Sbjct: 54 KVPEAAEPKSAEGSVNRD--------------TVLAKVATEKRMSLIKAWEESEKSKAEN 99

[Close]
BLAST of CsGy3G020780 vs. TrEMBL
Match: tr|A0A1S3CPW1|A0A1S3CPW1_CUCME (remorin OS=Cucumis melo OX=3656 GN=LOC103503454 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.0e-04
Identity = 33/60 (55.00%), Postives = 37/60 (61.67%), Query Frame = 0 

Query: 12 EVPEVAEPKSIEGSVNRGQITKKSKMVGKHIYVVLPNFAIQKKLFLIKAWEESEKSKREN 71
          +VPEVA+PKS EGSVNR                VL   A +K+L LIKAWEESEKSK EN
Sbjct: 54 KVPEVADPKSTEGSVNRD--------------AVLAKVATEKRLSLIKAWEESEKSKAEN 99

The following BLAST results are available for this feature:
BLAST of CsGy3G020780 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008465865.11.5e-0455.00PREDICTED: remorin [Cucumis melo][more]
XP_022159488.13.4e-0453.33remorin-like [Momordica charantia][more]
BLAST of CsGy3G020780 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsGy3G020780 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsGy3G020780 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3CPW1|A0A1S3CPW1_CUCME1.0e-0455.00remorin OS=Cucumis melo OX=3656 GN=LOC103503454 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy3G020780.1CsGy3G020780.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsGy3G020780CSPI03G21500Wild cucumber (PI 183967)cgybcpiB110
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsGy3G020780Watermelon (97103) v2cgybwmbB209
CsGy3G020780Wax gourdcgybwgoB259
CsGy3G020780Cucurbita maxima (Rimu)cgybcmaB308
CsGy3G020780Cucurbita maxima (Rimu)cgybcmaB368
CsGy3G020780Cucurbita moschata (Rifu)cgybcmoB281
CsGy3G020780Cucurbita moschata (Rifu)cgybcmoB339
CsGy3G020780Cucurbita pepo (Zucchini)cgybcpeB380
CsGy3G020780Cucurbita pepo (Zucchini)cgybcpeB397
CsGy3G020780Cucumber (Chinese Long) v2cgybcuB109
CsGy3G020780Bottle gourd (USVL1VR-Ls)cgyblsiB199
CsGy3G020780Melon (DHL92) v3.5.1cgybmeB212
CsGy3G020780Melon (DHL92) v3.6.1cgybmedB216
CsGy3G020780Watermelon (Charleston Gray)cgybwcgB217
CsGy3G020780Watermelon (97103) v1cgybwmB232
CsGy3G020780Silver-seed gourdcarcgybB0515
CsGy3G020780Silver-seed gourdcarcgybB0757
CsGy3G020780Cucumber (Chinese Long) v3cgybcucB117