CsGy3G020490 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy3G020490
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Unknown Protein
Location	Chr3 : 17334324 .. 17334632 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATAGAATTTATAAGTATTGTAATCTTATAATATGAAGCTAAAAGTAAGAGACATGCAAGCTGAATCCAAAAAAAAAAACCCTAGAAAACTACTATCTAGATTCGCTTGAGGTAGCAGGGCGAGCCAAGTGATGAAGAGAATGATCCAATATATTTGTGGATTAGGCATGCGCATCTCGTTGATGTTCAAGGTAATCCAGATCCACATGTTGCTGGTGTTGTAGAAGATATAGACATTGATGTTGAATGTGTCATACGTGAAAACTTTATAAGTAATAGTTCAAGTAGTGATGATGCCTCTTTTGAGTGA

mRNA sequence

ATAGAATTTATAAGTATTGGCGAGCCAAGTGATGAAGAGAATGATCCAATATATTTGTGGATTAGGCATGCGCATCTCGTTGATGTTCAAGGTAATCCAGATCCACATGTTGCTGGTGTTGTAGAAGATATAGACATTGATGTTGAATGTGTCATACGTGAAAACTTTATAAGTAATAGTTCAAGTAGTGATGATGCCTCTTTTGAGTGA

Coding sequence (CDS)

ATAGAATTTATAAGTATTGGCGAGCCAAGTGATGAAGAGAATGATCCAATATATTTGTGGATTAGGCATGCGCATCTCGTTGATGTTCAAGGTAATCCAGATCCACATGTTGCTGGTGTTGTAGAAGATATAGACATTGATGTTGAATGTGTCATACGTGAAAACTTTATAAGTAATAGTTCAAGTAGTGATGATGCCTCTTTTGAGTGA

Protein sequence

IEFISIGEPSDEENDPIYLWIRHAHLVDVQGNPDPHVAGVVEDIDIDVECVIRENFISNSSSSDDASFE

Homology

[Close]

BLAST of CsGy3G020490 vs. NCBI nr
Match: ONI29470.1 (hypothetical protein PRUPE_1G199600 [Prunus persica])

HSP 1 Score: 54.3 bits (129), Expect = 1.9e-04
Identity = 27/57 (47.37%), Postives = 36/57 (63.16%), Query Frame = 0


Query: 7   GEPSDEENDPIYLWIRHAHLVDVQGNPDPHVAGVVEDIDIDVECVIRENFISNSSSS 64
           G+PSD++N+PI  WI  AHL D QGNPD  +A       +DV+ VI E+  S  +SS
Sbjct: 568 GQPSDDDNNPIQQWIMTAHLDDEQGNPDTVIAQHAAQEGVDVDRVISEDVRSGDTSS 624

[Close]

BLAST of CsGy3G020490 vs. NCBI nr
Match: XP_017179906.1 (PREDICTED: uncharacterized protein LOC108169994 [Malus domestica])

HSP 1 Score: 53.5 bits (127), Expect = 3.3e-04
Identity = 27/57 (47.37%), Postives = 36/57 (63.16%), Query Frame = 0


Query: 7   GEPSDEENDPIYLWIRHAHLVDVQGNPDPHVAGVVEDIDIDVECVIRENFISNSSSS 64
           G+PSD++N+PI  WI   HL D QGNPD  +A  V    +DV+ VI E+  S  +SS
Sbjct: 102 GQPSDDDNNPIQQWIMTVHLDDEQGNPDAVIAQHVAQEGVDVDRVIFEDVRSGDTSS 158

[Close]

BLAST of CsGy3G020490 vs. NCBI nr
Match: XP_020415442.1 (uncharacterized protein LOC18782281 [Prunus persica])

HSP 1 Score: 53.1 bits (126), Expect = 4.2e-04
Identity = 26/57 (45.61%), Postives = 36/57 (63.16%), Query Frame = 0


Query: 7   GEPSDEENDPIYLWIRHAHLVDVQGNPDPHVAGVVEDIDIDVECVIRENFISNSSSS 64
           G+PSD++N+PI  WI   HL D QGNPD  +A       +DV+ VI E+  S ++SS
Sbjct: 345 GQPSDDDNNPIQQWIMTTHLDDEQGNPDAVIAQHAAQEGVDVDKVISEDVRSGNTSS 401

[Close]

BLAST of CsGy3G020490 vs. NCBI nr
Match: XP_009354802.1 (PREDICTED: uncharacterized protein LOC103945926 [Pyrus x bretschneideri])

HSP 1 Score: 52.0 bits (123), Expect = 9.5e-04
Identity = 26/57 (45.61%), Postives = 34/57 (59.65%), Query Frame = 0


Query: 7   GEPSDEENDPIYLWIRHAHLVDVQGNPDPHVAGVVEDIDIDVECVIRENFISNSSSS 64
           G+PSD++N+PI  WI   HL D QGNPD  +A       +DV  VI E+  S  +SS
Sbjct: 146 GQPSDDDNNPIQQWIMTTHLDDEQGNPDAVIAQHAAQEGVDVNRVISEDVRSGDTSS 202

[Close]

BLAST of CsGy3G020490 vs. NCBI nr
Match: PRQ49428.1 (putative HAT dimerization domain, ribonuclease H-like domain-containing protein [Rosa chinensis])

HSP 1 Score: 52.0 bits (123), Expect = 9.5e-04
Identity = 23/60 (38.33%), Postives = 37/60 (61.67%), Query Frame = 0


Query: 10  SDEENDPIYLWIRHAHLVDVQGNPDPHVAGVVEDIDIDVECVIRENFISNSSSSDDASFE 69
           ++E  DPIY W+R  HL D  GNPDP++A     + IDV+ V+++    +S  SD + ++
Sbjct: 207 AEETADPIYHWVRPLHLDDATGNPDPNIATHARGMGIDVDKVMKKEVTDHSDESDGSGYK 266

[Close]

BLAST of CsGy3G020490 vs. TrEMBL
Match: tr|A0A251R1B1|A0A251R1B1_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G199600 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 1.3e-04
Identity = 27/57 (47.37%), Postives = 36/57 (63.16%), Query Frame = 0


Query: 7   GEPSDEENDPIYLWIRHAHLVDVQGNPDPHVAGVVEDIDIDVECVIRENFISNSSSS 64
           G+PSD++N+PI  WI  AHL D QGNPD  +A       +DV+ VI E+  S  +SS
Sbjct: 568 GQPSDDDNNPIQQWIMTAHLDDEQGNPDTVIAQHAAQEGVDVDRVISEDVRSGDTSS 624

[Close]

BLAST of CsGy3G020490 vs. TrEMBL
Match: tr|M5X913|M5X913_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_ppa023591mg PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 2.8e-04
Identity = 26/57 (45.61%), Postives = 36/57 (63.16%), Query Frame = 0


Query: 7   GEPSDEENDPIYLWIRHAHLVDVQGNPDPHVAGVVEDIDIDVECVIRENFISNSSSS 64
           G+PSD++N+PI  WI   HL D QGNPD  +A       +DV+ VI E+  S ++SS
Sbjct: 328 GQPSDDDNNPIQQWIMTTHLDDEQGNPDAVIAQHAAQEGVDVDKVISEDVRSGNTSS 384

[Close]

BLAST of CsGy3G020490 vs. TrEMBL
Match: tr|A0A2P6RSL1|A0A2P6RSL1_ROSCH (Putative HAT dimerization domain, ribonuclease H-like domain-containing protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr2g0121831 PE=4 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 6.3e-04
Identity = 23/60 (38.33%), Postives = 37/60 (61.67%), Query Frame = 0


Query: 10  SDEENDPIYLWIRHAHLVDVQGNPDPHVAGVVEDIDIDVECVIRENFISNSSSSDDASFE 69
           ++E  DPIY W+R  HL D  GNPDP++A     + IDV+ V+++    +S  SD + ++
Sbjct: 207 AEETADPIYHWVRPLHLDDATGNPDPNIATHARGMGIDVDKVMKKEVTDHSDESDGSGYK 266

The following BLAST results are available for this feature:

BLAST of CsGy3G020490 vs. NCBI nr


Match Name	E-value	Identity	Description
ONI29470.1	1.9e-04	47.37	hypothetical protein PRUPE_1G199600 [Prunus persica]	[more]
XP_017179906.1	3.3e-04	47.37	PREDICTED: uncharacterized protein LOC108169994 [Malus domestica]	[more]
XP_020415442.1	4.2e-04	45.61	uncharacterized protein LOC18782281 [Prunus persica]	[more]
XP_009354802.1	9.5e-04	45.61	PREDICTED: uncharacterized protein LOC103945926 [Pyrus x bretschneideri]	[more]
PRQ49428.1	9.5e-04	38.33	putative HAT dimerization domain, ribonuclease H-like domain-containing protein ...	[more]

BLAST of CsGy3G020490 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsGy3G020490 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy3G020490 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A251R1B1\|A0A251R1B1_PRUPE	1.3e-04	47.37	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G199600 PE=4 SV=1	[more]
tr\|M5X913\|M5X913_PRUPE	2.8e-04	45.61	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_ppa023591mg PE=4 SV=1	[more]
tr\|A0A2P6RSL1\|A0A2P6RSL1_ROSCH	6.3e-04	38.33	Putative HAT dimerization domain, ribonuclease H-like domain-containing protein ...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy3G020490.1	CsGy3G020490.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy3G020490	Wild cucumber (PI 183967)	cgybcpiB110
CsGy3G020490	Silver-seed gourd	carcgybB0488
CsGy3G020490	Silver-seed gourd	carcgybB0489
CsGy3G020490	Silver-seed gourd	carcgybB0757
CsGy3G020490	Cucumber (Chinese Long) v3	cgybcucB117
CsGy3G020490	Watermelon (97103) v2	cgybwmbB201
CsGy3G020490	Watermelon (97103) v2	cgybwmbB209
CsGy3G020490	Wax gourd	cgybwgoB259
CsGy3G020490	Wax gourd	cgybwgoB289
CsGy3G020490	Wax gourd	cgybwgoB290
CsGy3G020490	Cucurbita maxima (Rimu)	cgybcmaB308
CsGy3G020490	Cucurbita maxima (Rimu)	cgybcmaB368
CsGy3G020490	Cucurbita moschata (Rifu)	cgybcmoB281
CsGy3G020490	Cucurbita moschata (Rifu)	cgybcmoB339
CsGy3G020490	Cucurbita pepo (Zucchini)	cgybcpeB380
CsGy3G020490	Cucurbita pepo (Zucchini)	cgybcpeB397
CsGy3G020490	Watermelon (97103) v1	cgybwmB223
CsGy3G020490	Cucumber (Chinese Long) v2	cgybcuB109
CsGy3G020490	Bottle gourd (USVL1VR-Ls)	cgyblsiB190
CsGy3G020490	Bottle gourd (USVL1VR-Ls)	cgyblsiB199
CsGy3G020490	Melon (DHL92) v3.5.1	cgybmeB212
CsGy3G020490	Watermelon (Charleston Gray)	cgybwcgB208
CsGy3G020490	Melon (DHL92) v3.6.1	cgybmedB216
CsGy3G020490	Watermelon (Charleston Gray)	cgybwcgB217
CsGy3G020490	Watermelon (97103) v1	cgybwmB232