CsGy3G020350 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy3G020350
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	DUF4219 domain-containing protein/UBN2 domain-containing protein
Location	Chr3 : 17084824 .. 17085499 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACAACCATGGCAATGCTATGGGTACAACACAACCACTCATTCTAATCTTCAAAGGAGAAGGCTACGAGTTTTGGAGTATGCGTATGAAGACTCTTTTCAGATCTCAAGACTTATGGGACTTAGTAGAACACAACTATGCGGATCCTGACGACGAAGGCAAGTTGCGGGAGAAGAGGAGAAAGGACTCTAAGGCGTTAGTGATTATTCAACAAGCAGTCCATGACAGTGGTTTTTCGCGGATTGGTACAACAACAACGTCAAAAGAAGCGTGGCTGATTTTGCAAAAGGCATTTCGAGGAGATTTAAGAGTACTTGTGGTAAAATTGCAATCACTTAGACAAGAATTTGAGACCTTGATGATGAAAAATAGAGAATCAATTGCTAATTTTTTGTCACGGGCAACGACAATTATTAGTCAGATGCAAACATACGGCGAGACGATTACAGATCAGACTATAGTGGAGAAAGTATTGAGAAGTTTGACTCTAAAGTTCGATCAAGTTGTGGCCGCAATAGAAGAATCAAAGGATCTGTCCACTTTCACATTTATTGAATTAATGGGATCTCTTCAAGCACATGAGTCAAGAATCAATAGATCGATGGAAAGAAACGAAGAAAAAGCGTTTCAGGTAAAGGATGTAGTTCCAAAGTATAATAACAGTGATCGTGTGA

mRNA sequence

ATGGACAACCATGGCAATGCTATGGGTACAACACAACCACTCATTCTAATCTTCAAAGGAGAAGGCTACGAGTTTTGGAGTATGCGTATGAAGACTCTTTTCAGATCTCAAGACTTATGGGACTTAGTAGAACACAACTATGCGGATCCTGACGACGAAGGCAAGTTGCGGGAGAAGAGGAGAAAGGACTCTAAGGCGTTAGTGATTATTCAACAAGCAGTCCATGACAGTGGTTTTTCGCGGATTGGTACAACAACAACGTCAAAAGAAGCGTGGCTGATTTTGCAAAAGGCATTTCGAGGAGATTTAAGAGTACTTGTGTTCCAAAGTATAATAACAGTGATCGTGTGA

Coding sequence (CDS)

ATGGACAACCATGGCAATGCTATGGGTACAACACAACCACTCATTCTAATCTTCAAAGGAGAAGGCTACGAGTTTTGGAGTATGCGTATGAAGACTCTTTTCAGATCTCAAGACTTATGGGACTTAGTAGAACACAACTATGCGGATCCTGACGACGAAGGCAAGTTGCGGGAGAAGAGGAGAAAGGACTCTAAGGCGTTAGTGATTATTCAACAAGCAGTCCATGACAGTGGTTTTTCGCGGATTGGTACAACAACAACGTCAAAAGAAGCGTGGCTGATTTTGCAAAAGGCATTTCGAGGAGATTTAAGAGTACTTGTGTTCCAAAGTATAATAACAGTGATCGTGTGA

Protein sequence

MDNHGNAMGTTQPLILIFKGEGYEFWSMRMKTLFRSQDLWDLVEHNYADPDDEGKLREKRRKDSKALVIIQQAVHDSGFSRIGTTTTSKEAWLILQKAFRGDLRVLVFQSIITVIV

Homology

[Close]

BLAST of CsGy3G020350 vs. NCBI nr
Match: XP_004145871.1 (PREDICTED: uncharacterized protein LOC101208246 [Cucumis sativus])

HSP 1 Score: 217.2 bits (552), Expect = 2.9e-53
Identity = 105/107 (98.13%), Postives = 106/107 (99.07%), Query Frame = 0


Query: 1   MDNHGNAMGTTQPLILIFKGEGYEFWSMRMKTLFRSQDLWDLVEHNYADPDDEGKLREKR 60
           MDN+GNAMGTTQPLILIFKGEGYEFWSMRMKTL RSQDLWDLVEHNYADPDDEGKLREKR
Sbjct: 1   MDNNGNAMGTTQPLILIFKGEGYEFWSMRMKTLLRSQDLWDLVEHNYADPDDEGKLREKR 60

Query: 61  RKDSKALVIIQQAVHDSGFSRIGTTTTSKEAWLILQKAFRGDLRVLV 108
           RKDSKALVIIQQAVHDSGFSRIGTTTTSKEAWLILQKAFRGDLRVLV
Sbjct: 61  RKDSKALVIIQQAVHDSGFSRIGTTTTSKEAWLILQKAFRGDLRVLV 107

[Close]

BLAST of CsGy3G020350 vs. NCBI nr
Match: XP_008463459.1 (PREDICTED: uncharacterized protein LOC103501626 [Cucumis melo])

HSP 1 Score: 165.6 bits (418), Expect = 9.9e-38
Identity = 80/107 (74.77%), Postives = 90/107 (84.11%), Query Frame = 0


Query: 1   MDNHGNAMGTTQPLILIFKGEGYEFWSMRMKTLFRSQDLWDLVEHNYADPDDEGKLREKR 60
           M ++ NAMGT QP+I IFKGEGYEFWS+ MKTL RSQDLWDLVE  YADPDDE KL E +
Sbjct: 1   MGSNDNAMGTAQPIIPIFKGEGYEFWSIHMKTLLRSQDLWDLVEQGYADPDDEDKLWENK 60

Query: 61  RKDSKALVIIQQAVHDSGFSRIGTTTTSKEAWLILQKAFRGDLRVLV 108
           +KDSKALVIIQQ VHDS FSRI   T+SK+AWLILQKAF+GD RVL+
Sbjct: 61  KKDSKALVIIQQVVHDSVFSRIVAATSSKQAWLILQKAFQGDSRVLM 107

[Close]

BLAST of CsGy3G020350 vs. NCBI nr
Match: XP_010918050.1 (PREDICTED: uncharacterized protein LOC105042504 [Elaeis guineensis])

HSP 1 Score: 134.4 bits (337), Expect = 2.4e-28
Identity = 65/106 (61.32%), Postives = 82/106 (77.36%), Query Frame = 0


Query: 1   MDNHGNAMGTTQPLILIFKGEGYEFWSMRMKTLFRSQDLWDLVEHNYADPDDEGKLREKR 60
           M  + N+M  TQPLI IFKGE YEFW ++MKTLF+SQDLWDLVE+ +ADPD+E +LREK 
Sbjct: 1   MAANNNSMNMTQPLIPIFKGECYEFWGIKMKTLFKSQDLWDLVENGFADPDEEQRLREK- 60

Query: 61  RKDSKALVIIQQAVHDSGFSRIGTTTTSKEAWLILQKAFRGDLRVL 107
           +K+ KAL  IQQA+H+  FSRI   TTSK+AW +LQK F+G  + L
Sbjct: 61  KKEFKALFFIQQAMHEMTFSRIAAATTSKQAWEMLQKEFQGLTKTL 105

[Close]

BLAST of CsGy3G020350 vs. NCBI nr
Match: CAN60366.1 (hypothetical protein VITISV_031870 [Vitis vinifera])

HSP 1 Score: 133.7 bits (335), Expect = 4.2e-28
Identity = 61/103 (59.22%), Postives = 80/103 (77.67%), Query Frame = 0


Query: 4   HGNAMGTTQPLILIFKGEGYEFWSMRMKTLFRSQDLWDLVEHNYADPDDEGKLREKRRKD 63
           +G+ +  +QP I IFKGE YEFWS++MKTLF+SQDLWDLVE+ Y  PD+E +L+E  +KD
Sbjct: 5   NGSMVSVSQPTIPIFKGECYEFWSIKMKTLFKSQDLWDLVENGYPYPDEEARLKENTKKD 64

Query: 64  SKALVIIQQAVHDSGFSRIGTTTTSKEAWLILQKAFRGDLRVL 107
           SKAL  IQQAVH+S FS+I   TT+KEAW  L+ AF+G  +V+
Sbjct: 65  SKALFFIQQAVHESIFSKIAAATTAKEAWTTLKTAFQGSSKVI 107

[Close]

BLAST of CsGy3G020350 vs. NCBI nr
Match: CAN72676.1 (hypothetical protein VITISV_020406 [Vitis vinifera])

HSP 1 Score: 133.7 bits (335), Expect = 4.2e-28
Identity = 61/103 (59.22%), Postives = 80/103 (77.67%), Query Frame = 0


Query: 4   HGNAMGTTQPLILIFKGEGYEFWSMRMKTLFRSQDLWDLVEHNYADPDDEGKLREKRRKD 63
           +G+ +  +QP I IFKGE YEFWS++MKTLF+SQDLWDLVE+ Y  PD+E +L+E  +KD
Sbjct: 5   NGSMVSVSQPAIPIFKGECYEFWSIKMKTLFKSQDLWDLVENGYPYPDEEARLKENTKKD 64

Query: 64  SKALVIIQQAVHDSGFSRIGTTTTSKEAWLILQKAFRGDLRVL 107
           SKAL  IQQAVH+S FS+I   TT+KEAW  L+ AF+G  +V+
Sbjct: 65  SKALFFIQQAVHESIFSKIAVATTTKEAWTTLKTAFQGSSKVI 107

[Close]

BLAST of CsGy3G020350 vs. TAIR10
Match: AT1G48720.1 (unknown protein)

HSP 1 Score: 60.5 bits (145), Expect = 8.1e-10
Identity = 25/76 (32.89%), Postives = 47/76 (61.84%), Query Frame = 0


Query: 23 YEFWSMRMKTLFRSQDLWDLVEHNYADPDDEGK--------LREKRRKDSKALVIIQQAV 82
          Y+ WS+RMK +  + D+W++VE  + +P++EG         LR+ R++D KAL +I Q +
Sbjct: 18 YDNWSLRMKAILGAHDVWEIVEKGFIEPENEGSLSQTQKDGLRDSRKRDKKALCLIYQGL 77

Query: 83 HDSGFSRIGTTTTSKE 91
           +  F ++   T++K+
Sbjct: 78 DEDTFEKVVEATSAKD 93

[Close]

BLAST of CsGy3G020350 vs. TrEMBL
Match: tr|A0A1S3CJ95|A0A1S3CJ95_CUCME (uncharacterized protein LOC103501626 OS=Cucumis melo OX=3656 GN=LOC103501626 PE=4 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 6.5e-38
Identity = 80/107 (74.77%), Postives = 90/107 (84.11%), Query Frame = 0


Query: 1   MDNHGNAMGTTQPLILIFKGEGYEFWSMRMKTLFRSQDLWDLVEHNYADPDDEGKLREKR 60
           M ++ NAMGT QP+I IFKGEGYEFWS+ MKTL RSQDLWDLVE  YADPDDE KL E +
Sbjct: 1   MGSNDNAMGTAQPIIPIFKGEGYEFWSIHMKTLLRSQDLWDLVEQGYADPDDEDKLWENK 60

Query: 61  RKDSKALVIIQQAVHDSGFSRIGTTTTSKEAWLILQKAFRGDLRVLV 108
           +KDSKALVIIQQ VHDS FSRI   T+SK+AWLILQKAF+GD RVL+
Sbjct: 61  KKDSKALVIIQQVVHDSVFSRIVAATSSKQAWLILQKAFQGDSRVLM 107

[Close]

BLAST of CsGy3G020350 vs. TrEMBL
Match: tr|A0A0V0IV83|A0A0V0IV83_SOLCH (Putative ovule protein (Fragment) OS=Solanum chacoense OX=4108 PE=4 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 1.7e-33
Identity = 68/107 (63.55%), Postives = 86/107 (80.37%), Query Frame = 0


Query: 1   MDNHGNAMGTTQPLILIFKGEGYEFWSMRMKTLFRSQDLWDLVEHNYADPDDEGKLREKR 60
           M  +G+++   QPLI +FKGE YEFWS+RMKT+ +SQDLWDLVE  Y DPD+E +LR+ +
Sbjct: 1   MATNGSSLSVAQPLIPVFKGESYEFWSIRMKTILKSQDLWDLVERGYTDPDEENRLRDNK 60

Query: 61  RKDSKALVIIQQAVHDSGFSRIGTTTTSKEAWLILQKAFRGDLRVLV 108
           +KD+KALV IQQAVHDS FSRI   TTSK+AW ILQK F+GD +V+V
Sbjct: 61  KKDAKALVFIQQAVHDSIFSRIAXATTSKQAWSILQKXFQGDSKVIV 107

[Close]

BLAST of CsGy3G020350 vs. TrEMBL
Match: tr|M0SED6|M0SED6_MUSAM (Uncharacterized protein OS=Musa acuminata subsp. malaccensis OX=214687 PE=4 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 1.6e-31
Identity = 69/103 (66.99%), Postives = 84/103 (81.55%), Query Frame = 0


Query: 4   HGNAMGTTQPLILIFKGEGYEFWSMRMKTLFRSQDLWDLVEHNYADPDDEGKLREKRRKD 63
           +GN+M  +QPLI IF G+ YEFWS++MKTLF+SQDLWDL+E+ YADPDDE KLRE R+KD
Sbjct: 4   NGNSM--SQPLIPIFSGKSYEFWSIKMKTLFKSQDLWDLIENEYADPDDEIKLRENRKKD 63

Query: 64  SKALVIIQQAVHDSGFSRIGTTTTSKEAWLILQKAFRGDLRVL 107
           SKAL  IQQAVH++ F RI   TTSK+AWLILQ  F+G  RV+
Sbjct: 64  SKALFFIQQAVHETIFLRIAAATTSKQAWLILQNEFQGSSRVI 104

[Close]

BLAST of CsGy3G020350 vs. TrEMBL
Match: tr|A5BT67|A5BT67_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_020406 PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 2.7e-28
Identity = 61/103 (59.22%), Postives = 80/103 (77.67%), Query Frame = 0


Query: 4   HGNAMGTTQPLILIFKGEGYEFWSMRMKTLFRSQDLWDLVEHNYADPDDEGKLREKRRKD 63
           +G+ +  +QP I IFKGE YEFWS++MKTLF+SQDLWDLVE+ Y  PD+E +L+E  +KD
Sbjct: 5   NGSMVSVSQPAIPIFKGECYEFWSIKMKTLFKSQDLWDLVENGYPYPDEEARLKENTKKD 64

Query: 64  SKALVIIQQAVHDSGFSRIGTTTTSKEAWLILQKAFRGDLRVL 107
           SKAL  IQQAVH+S FS+I   TT+KEAW  L+ AF+G  +V+
Sbjct: 65  SKALFFIQQAVHESIFSKIAVATTTKEAWTTLKTAFQGSSKVI 107

[Close]

BLAST of CsGy3G020350 vs. TrEMBL
Match: tr|A5AL21|A5AL21_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_031870 PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 2.7e-28
Identity = 61/103 (59.22%), Postives = 80/103 (77.67%), Query Frame = 0


Query: 4   HGNAMGTTQPLILIFKGEGYEFWSMRMKTLFRSQDLWDLVEHNYADPDDEGKLREKRRKD 63
           +G+ +  +QP I IFKGE YEFWS++MKTLF+SQDLWDLVE+ Y  PD+E +L+E  +KD
Sbjct: 5   NGSMVSVSQPTIPIFKGECYEFWSIKMKTLFKSQDLWDLVENGYPYPDEEARLKENTKKD 64

Query: 64  SKALVIIQQAVHDSGFSRIGTTTTSKEAWLILQKAFRGDLRVL 107
           SKAL  IQQAVH+S FS+I   TT+KEAW  L+ AF+G  +V+
Sbjct: 65  SKALFFIQQAVHESIFSKIAAATTAKEAWTTLKTAFQGSSKVI 107

The following BLAST results are available for this feature:

BLAST of CsGy3G020350 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004145871.1	2.9e-53	98.13	PREDICTED: uncharacterized protein LOC101208246 [Cucumis sativus]	[more]
XP_008463459.1	9.9e-38	74.77	PREDICTED: uncharacterized protein LOC103501626 [Cucumis melo]	[more]
XP_010918050.1	2.4e-28	61.32	PREDICTED: uncharacterized protein LOC105042504 [Elaeis guineensis]	[more]
CAN60366.1	4.2e-28	59.22	hypothetical protein VITISV_031870 [Vitis vinifera]	[more]
CAN72676.1	4.2e-28	59.22	hypothetical protein VITISV_020406 [Vitis vinifera]	[more]

BLAST of CsGy3G020350 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G48720.1	8.1e-10	32.89	unknown protein	[more]

BLAST of CsGy3G020350 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy3G020350 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CJ95\|A0A1S3CJ95_CUCME	6.5e-38	74.77	uncharacterized protein LOC103501626 OS=Cucumis melo OX=3656 GN=LOC103501626 PE=...	[more]
tr\|A0A0V0IV83\|A0A0V0IV83_SOLCH	1.7e-33	63.55	Putative ovule protein (Fragment) OS=Solanum chacoense OX=4108 PE=4 SV=1	[more]
tr\|M0SED6\|M0SED6_MUSAM	1.6e-31	66.99	Uncharacterized protein OS=Musa acuminata subsp. malaccensis OX=214687 PE=4 SV=1	[more]
tr\|A5BT67\|A5BT67_VITVI	2.7e-28	59.22	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_020406 PE=4 SV=1	[more]
tr\|A5AL21\|A5AL21_VITVI	2.7e-28	59.22	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_031870 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR025314	DUF4219

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0048653	anther development
biological_process	GO:0015074	DNA integration
biological_process	GO:0071588	hydrogen peroxide mediated signaling pathway
biological_process	GO:0002237	response to molecule of bacterial origin
cellular_component	GO:0005634	nucleus
molecular_function	GO:0042803	protein homodimerization activity
molecular_function	GO:0043565	sequence-specific DNA binding
molecular_function	GO:0008270	zinc ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy3G020350.1	CsGy3G020350.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025314	Domain of unknown function DUF4219	PFAM	PF13961	DUF4219	coord: 19..44 e-value: 8.1E-7 score: 28.5

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy3G020350	CSPI03G20730	Wild cucumber (PI 183967)	cgybcpiB110
CsGy3G020350	CsaV3_3G020670	Cucumber (Chinese Long) v3	cgybcucB117

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy3G020350	Watermelon (97103) v2	cgybwmbB209
CsGy3G020350	Wax gourd	cgybwgoB259
CsGy3G020350	Cucurbita maxima (Rimu)	cgybcmaB308
CsGy3G020350	Cucurbita maxima (Rimu)	cgybcmaB368
CsGy3G020350	Cucurbita moschata (Rifu)	cgybcmoB281
CsGy3G020350	Cucurbita moschata (Rifu)	cgybcmoB339
CsGy3G020350	Cucurbita pepo (Zucchini)	cgybcpeB380
CsGy3G020350	Cucurbita pepo (Zucchini)	cgybcpeB397
CsGy3G020350	Cucumber (Chinese Long) v2	cgybcuB109
CsGy3G020350	Bottle gourd (USVL1VR-Ls)	cgyblsiB199
CsGy3G020350	Melon (DHL92) v3.5.1	cgybmeB212
CsGy3G020350	Melon (DHL92) v3.6.1	cgybmedB206
CsGy3G020350	Watermelon (Charleston Gray)	cgybwcgB217
CsGy3G020350	Watermelon (97103) v1	cgybwmB232
CsGy3G020350	Silver-seed gourd	carcgybB0489
CsGy3G020350	Silver-seed gourd	carcgybB0757