CsGy3G019930 (gene) Cucumber (Gy14) v2

Overview
NameCsGy3G019930
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
Descriptiontransportin-3 isoform X2
LocationChr3 : 16262950 .. 16271174 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTAATGTACCAATTCCTTGGAAGGAAGTGGAGAGCAAATTATTTGCCCTTAATGTGGTGAGGGAACATACCAGCAGTTTTGTTTGTTTCTTATATTATTAGATGTGACACATTGGAGAGCATTCATGTAACTCTCGGGTCCTTGTTACATTTCAGTATCTTAATGGAAAGTGCTTTATTCCTATGAGATAAAAAGAGAGAAAAAGATAGAAAGAAAAGATAACCATCATGAAACACTAGAATATTCAAGGAGATATAATAATTAATTCAGCAAGTACTTCCTTTCTATACCATTATTATAAGGGGAAATTATTATTATTACTATTATTATTTTGAAAAGGAAGCTAACCTTTTCATTGAAGAAATGTGAAGAGACTAATGCTCAAAATACAATAAAGCCAAAATATAAAACAAAGTACTATGACAAAATACACATAAATACTAAGCTGGAAAATAAAAGAATTCCAATTTAATCATAAGTCCATGCCAAACAAAAAAAAAAAGACTTCGAAAGAGAGCACCAGGAAGAAACAGTAATCTGAGCAACTGTAGAATGATCCAAGATAATAGTGATCTATCATGAAAAACTTCATTCCTTTCCGACCAGATTTCAGCAAGAATTGCTTTAACCGCTTATGACCAAATCAATTGAGATTTAGGCTTCAAATCTGGACCAACCAAAATCTGAACCACATTGTTCTTTTAACCATTAGTTGGACCATATACATTTGTTGCCCATCCATCCTTGATAATAAGCTAATTGCCCAATCTTCCAAACGTTTCTACCTCCTGCATTCAAGATCAATAGATCTGCCGATAGGTTTGACTACACTTCTATTCCTTCTTTAATTTGTTTTTCTTAAATCTTTTATTCTCTTCAAAAAGAAGAAAAGAAATGAAACCACCTTCCAGATTAATGTTTTTGTTTACTGTTACTTTCTTTTCATAGTTTTCAAGGCCCTAGGTGTTCTAATATGCTCTCTGTCGTTTCTTATTAAAAAAAGACGACTCCCACAAGGAGTTAAATAGAAATAATCATGTGAAGCTTTTTTCTTATTTATATGATTAAATAATATGTATCATTACAGGTCGCTGAGGTAGTCCTACAGGAGGGTCAAAGCTTTGATTTCTCTGTAATAACACAACTGGTGACCATGTTGGCGGCTAGACCTTCAAATGAGATCAAAGGCCTAATGTGCCTTGTATGTTGGTACCTTACACTTCTCGAGTGTGAATAGCTTAGTTTATCTAGACCTCATGGGAAGCTTTATGGCCTCATAAACCAGAAGTTGCACAGTACTATCATATATCTAACTCTTTTATTGTTTAAAAATGCCACTCCAGGTTTATAGATCACTGGCAGAAGTTGTTGGATCTTACTTTAGGTCAATTTCTGCTTTTCACACAGATGCCAGACCCTTGCTGTAAGAACTCTTCTTTCTTTTCTCTTCTTTTCTTTTTTTACCAATTTGCAGGGTTCAATTCTTATTGATTATCTATTTTGTCATTGCATACAACCTATAAGTTTATAATCACTTTCTCAAGAGTTAAGGGTCAACTAGATCTTGTTAAATCATCAATGAACTAAAAATCAAATTGATGGATTATGGTAAATTTAATTAGTTATATTAATTATCTAACATTCTCCCTCACTTGTGGGCTTGGAAATTTGTAGAAGGCCCAACAAGTGAACATCACTATTAATTGGGAAGAAGATGATATTGTAGGGTTTCAAATACAAGATGTCCTTCTTCGATTACTGTGTTAAATCACCAATTATCTCATGAATCATGGTAAATTTAATCATATCAACTACTATACTGTTCTGTGCTCTCTCCTCTCTCCTTTCTTTACCCCTCCACCTTCCTTCGTCTAGCCTCCCCATCCGGTCAACCTCCATTGACATCCAATTTTGTTTCGTGTTGAATTCCATCTATTAGTTTTCCGGCAAGAAAACCTTCGTTTTCAGTATTCTGGTGAGTGTGTTTTCAGATTCTTTCCTTTTTGGACGCTTCAATCATAGTGGAAGTGGAATGTTGTATTATTGATAACTTGTTTTTCCGCATTTTCATACGAGGATGATCATTTCATGTGAAAGATGTAGAAGCCAACTTATACTGTCATTATCATTACCCCCAGCTTATATGGTTTCACGAAGGCATTTCAGTTCTGAGCCAAAAACCAAAAGATAGATTCTTTTTCAAAAATGAAAAAGTTGAAAATGGAATGGTTGAAGTTTCTAAGTTCAGAGCTAAGTTTGGTTGGGTAATGAGATGCATTGTTTGTCCCTGTACAGGTGGGAGGTTCTTCATTCATATTCCCTTAGGTCAAGATAAACAGGGTTGGGTTTCGCTGAGCAAAATGTTAAGAGGCTTCAAGTTAAAACATGAATACATGACTTGGTACTCATCCCATTCAAGGTGATCAATCAGGAGTAAGAAGATTGAGGAGCAATCTTTTAAGGTGTTGAAAGATAATTATGCAGAGAAGGTGAAGCCAATGAGTTACATTCATTCCTTTGTTCTAGAACCTGAAAAACAAAGCATGGACTGTCATTGGATTCACAAGAATCCAGAAGTTTGTAAAGTTGATTTCAACAATCTTTGGACCGTTACGGGACTGTTTGAGTTTGATGAATGGACATAAATAGCAAGCACTTTAAAATTATTCTTTGATTCTGATATCATTTTCAATCCTTTGTCTGCGGAAAGTGCTTTACTTGATTTGGATCAAGGTGAGGTGGAAGATTTTGTTGAATACATGGGGAAATCGCAAGTTTGTTGCCATTTTCATTTAAAACTTGAAAAGTGGAACATGCAGTTACATGGTCGTTCAAAAGTAGTGAAGGGCTTTGGCAGGTGGATTTGAATTAAAAACTTACCCTTAGACTAGTGGAGTCGGCAAACCTTTGAAGCTCTTGTGTCTTATGTCGGTGGTCTAGTATCTATTGCAAATGAAACATTGAATGTTGTTAATGTTGTTGAAGCAAAAATTCAAGTTCAAAAACATGTATGTTGTTTTATACCATCTACTATAGACATCTCAGATGAAAAAAAAGGTAACATTTTTCTGAATTTTGGATATATTGAATGTTTGGAACCTACGATCAAAGTTCAAGGTGCTTTATTTATAAAAGATATCCAACTCAATTGACTTGACCCGTTTAAAGCATGTTTTGTTGGACGAAGCGTTTGATTCTTCCGGTTCCGTTACAAATCAAAACCAAAACAAGGATGAACTAAAGAGCAGAACAACTCAAAATTTAATAGAAACAACAAACCCTAAGCACAAAAGGTAATTTCAAATAACTTCACACCCTGAGTCGATTTTGATGATAACAAATGCACAAACCAGCCAGAAAACAAAAATCGAGACGACCCAACCAATGGAAACCAAAACGGAGCTTCACGCGTGGAAACAGAACACTCTCTTCTGACGGTGCGTGATGTGTCCGACAAACTTCGGTGGATGGTAGTGGCACTCCTCCTAAGATGGGCAACGTCAACAAACAACCACTCGGAGTTGACCTAAACTTAAACCCTAATGGAGAGCAAAGCCATCAAGCAAATATTTCCAAACCTTAGATTCTCTGATACCATGGACTATGTACTTTTGGAAAATATAATGATCTTATTCTTTAATCAGACTGAAGATACATACATATAGACAACTACAATATAAACAAATATTATAACAACCACCACCATTATCTGTCGAACAAAGAGGACAAACTAAAGGCAAGAGAAAGTTACTTGGAAGCTTTCTTTGCACAGTCTTTGAGCTATTGAGTGCCTAAAAAATCATAACCCAAACAATGAACTCTTTGTGGACATCCCCTTTTTTATGTTTTATTCGGGATATGATGCTTGGCGCTAAAGGGGTTTCAACCTAGCTGAGACGTCCTTGTGCGTCTCATGGTCCATCTAGGACTCCCTTGATTCATCTTCTTTATTGCTTTCATTGTTAACTCTCTTGTATTTGAGTTCTTATTAATAAAGAAGTTGTCTCTAATTCAAACTAGAAAAAAACTCTTCTTGGACAACATGATTTCCACAAAGCATTATACTACTTATTACTATTACTATTATTTTCGAAAAGGGGACGGGCAGCTTGATACAGCTTATTAACCGTTGGAGGAGATGCAACCAAATCCTTCAAAAGAGAGTTAACTGAAAATGAACCTGACGCCTCCAATTTTCAGCTTCTAGAATCCCTTCTATTGACCACTCTTTAGTCGTTATGAGAGTTAGTAACAGAGGTAGACAGGGAGTTGTTTTTTAGCTGTTGGGGAGTTAATGCAATTCTTTGGTCACTTGGTGCCTGTGAATAGTAGCTCTCTAAGTTGTAAAATAATATTCAATTGATAAAAGATTATCATTACACCCCTACTCATATGCTCTAATATCATTCATCACACTGAGCTCCTTAAGTCCCTCGATTCATGGTGTTTTTGTGTTATTATATTATTATTATTTGGAAACTATGTTTTTATGTTTATAACCAATCGTCATTTATATGCTAATGATATTCTCAATAAACACCTATTGGTACTTTTTCATATTCCATGACTGCTTCCTTGTTGACCTATGACTTCATGGCTTGGATCATATCGAACCATTCATCTATAGAAATATGATCACGTTGGGCTGAAGTTTATTGTTTGCACGATTGTAGTATATAATCTATCATCTATTGATGCAATGCTCGTTCCAACTGTATTCATCTTCTTTATTATCAATAAGAAGTAAATTTATTTATTTTTGAATTCTAGTTTTTCCCTTTTATATTGATCTTCTGTTTTCAGATTATTTCTTGCTACTGGGATCACAGAATCTGTCTGTTCACATGCTTGTGCCTTTGCCCTCCGTAAAATTTGTGAAGATGCAACTGCTGTAATCTTTGAACTGCCAAATTTGGAAATTTTGATTTGGATTGGAGAGGTAATATTCCTTGATTATTGTTACAAGTCAGCTAAATTTGAACGAAAATGAATATTGTGCAATCCTTAGTGACTGATGTTATAGATGAAACTAAGAGTTAAATTCAGCACACAATATTGTTTGATGTTATAATAAACATTTCTCATTAAATGTAATATGTGATGTTTTGAAACTTTATTGCCATTGAGACAATATGAAAACAATATAGATTTATGTTATTGCTAGTCCTGTTTGTATAATGATCTCTTGGACTAAGTGTAACTAGCCTTCGGTTTCCTAGAGTCTGGAGAAGTTACATTTACCTTTGGAGGACGAGGAAGAAGTAGTGAGTGCTGTAAGTTTGATTCTTGGTTCAGTTCCTAATAAAGAACTGAAGAGCAACTTGTTGGCTAGATTGCTTTCGTCAAGCTATGAAGCAATTGAGAAACTAGTAAGTTTCCACTTATAACTATTTTGATATTAATGTTTTCTCATTTCTTGGTATATTGTAGGTCTGTTTGGAGATTTCTTTCTGACAAATGAATTTTTCAAATAACAATAGACATCTTGCAAGTGTCACTTGGCCTCAGTCTTAACCAATATCCACCCCATTTCTCAAGATTTAACCTGATAAGGTCCTGTTTCAATAAAGATAAAAGGAGAGGGATGGGATTAAAAAGGAGGTAGCAGATTAGGTGAGGTTTTCTACTTATCAAAATCGACAGCAAGTCACTGAGAAGTTTTCCAATGAATTTGAATAACCAAAGAGGAATATATTTACAACCTTCCCTGCAACACACGTAGTTTTTCTTTACTTTGTATTGTACTCTTTTCTTTTTCTTTTTTTGAATGGAAACAAGATTGGTCATTGAATAAATGAAAGGAGGTTACTGCTCAAAATACAAGGAGACAATACAAAACAAGAACTTCCCAAGTACAGTTAGAGCAGTACATAAACAAGATTACAAAATTCTGCAAATAGAGTTGAAAAAGTGTTCCAAAATTAAGAAGCTTTAATTTTGGCAGCTTTAAAGTGGTGAAGCTAGGGATGATGCTTGAAAATTTGTTTGATCCCGAGAGAAATAACACTACTAAGAGGAATTACCTTAAGCTTCTTAACTCTGTTTAAGGCCGATGCTTGAACATTCACTCAATTGTGTGGAAGCCGAAAGGGAAAAGAATTTGATGCTTCAAGCTAGAGATTTTGCAACTTGATCGGAGGCAAGATGGTGAAGAAATTGATACTCATAAAGTCAAACTCATTGTTCAAGGTGATGGGAGGCGCCATCAAACTTTGCCGGCTTGTTTTGTGTTTCTTGCAACCAATTTCAAAATGTGACCTACCCTTTCATATTACCAATTCATTTGAGAAGCATCTCGATCAGGATATAGATTCTCCTTTCAGTGTCAGCAGAGAATAATTAGCGGGTTTTCCAAGTGATTTTGATTATAAGTTTAATACAGAGATAGAAGGGGCTGACCTTTCTGCAGTATTTGAAGAAACTGTCATCCCTCCTATTCAAGTTTCTATTAGAACAAAGAGTGATTCATCCTCAGTATCAAAAATGTATCTCTAAACTTCTTGGATATTCGTTAGGTGTTATATAAACCGGGCCTTGAGAATAAAGCTGCAGATGCTATGTATCTCTAAACTTCTTGAATATTCGTTTGAGGTGTTACATAAACCGGGCCGTGAGAATAAAGCTGCAGATGCTTTGTCAAGAGTACCACCTGTGGTGCATTTGAATCAGTTGACTGCCCCAAATATACTTGATACTGTTGTTATCAAAGAAGTAGGAAATGATGAAAAATTGCAGAAGATCAGAGAAGAATTGGAAGAGAAGGGAGAGGGTCAAGAAACCAAGTTCTCATTGAAGCAGTATACTGATGTACAAAGACCGGATGGTGATATCGAAATCTTCCAAGTTGATTCCTTCAATCTTACATACTTACCATGATTCTGTTTTTGGAGGACATTTGGGGTTCCTGCGAACTTATAAAAGACTAACTGGAGAATTATATTGGGAGGGAATGAAACAGGATGTTAAGAGATATTGTGAGGAGTGCATTATATGCCAACGAAATAAGATGTTAGCACTATCTCCAGCTAGGTTGTTGACGCCCTTAGAAGTACCTGGTAGAGTGTGGGAAGACAGATCAATCCTCACTTAAATGTTCCAAATATTCGTGTATTCTATCACAAGAACACACAAGAACAAAATTCTACATTCTAGAATTTCCAGATTTCATTCATCCGAATTCTTTCTTTAAAATATAGAAATTACAACCCTATTTATACTAATTAAAATATGAAATGAAAGGTCACAATATTTAATTTTATACCCTTTCAACTACCATAATAAATGAAAGCACATAAATACATAATTCCTTAAACATCTAATTTTATGACTTTTGAGTTGCCCAAATAACTCTTCAACTTCCAATCATTGCATCTCTTCAACTTCTTCATTTGATTCAATTCCGATTTCTTGATTCATATCATTCTCCTCTTCTTCACAATTCCGATTTCTTGATTCATATGTATTGGCAAGTTAGGTCTAATTTACATCTACACCTCAACTTGAGGGGGAGTCTTGAAAATAATTGTACTAAGGGTATTTGTGTAACTTTATACCCTTGTTTATTTCCTTTTTTGTCAACGCTAATTATGGCCTATAAATATTCCATCTCTTGTATTCTTTTGGTAATAAGAAAAATATACAAAAAACTCATATCGTGGTTTTTTCTTGCTAAACTAGGGTTTTACATGTATACACGGTGTTATTTTCTCTTCTTCTTTAATTAATTTTTATAATATGAATTCTATGTAATCATTGATAAATTAAAAGAAGTGTGTTTCATTTTTCAGGTTGATGAAGATAATGCACTATCTTTGAGACAAAATCCGGCTACTTACACAAAAATCTTAACCTCTGCTGTGAGAGGCCTGTATAGGTATCGTGATTAAATAGTTTGTCCCAAGGGTATATTCTTTTCCGTGTGTTTAAGAGCTGTTTTCTTATATATGTTTATAGCTTTATTTTGGTTTCCGTATATGTTTTTTTTTAAAAGGAGATGAAGTTCGTCTCCTTTATCATTAATAAAGAAGTTCATCTGATCCGGAGGAGGAATCTTGAGGGAATTATTAGAAAACCATCTAGCATAATCCAGTTTTTCGACAAACTTATCCAGCATTTAGCAAAATAATTTCCAACTTGCTTCTCACTAACTAAGCACACTCTGATATTGAAGAGACCCCCTGAATATGGCCATTGTTCACAGCTCAGTATCCAACCCAACTTAG

mRNA sequence

ATGGTCGCTGAGGTAGTCCTACAGGAGGGTCAAAGCTTTGATTTCTCTGTAATAACACAACTGGTGACCATGTTGGCGGCTAGACCTTCAAATGAGATCAAAGGCCTAATGTGCCTTGTTTATAGATCACTGGCAGAAGTTGTTGGATCTTACTTTAGGTCAATTTCTGCTTTTCACACAGATGCCAGACCCTTGCTATTATTTCTTGCTACTGGGATCACAGAATCTGTCTGTTCACATGCTTGTGCCTTTGCCCTCCGTAAAATTTGTGAAGATGCAACTGCTGTAATCTTTGAACTGCCAAATTTGGAAATTTTGATTTGGATTGGAGAGAGTCTGGAGAAGTTACATTTACCTTTGGAGGACGAGGAAGAAGTAGTGAGTGCTGTAAGTTTGATTCTTGGTTCAGTTCCTAATAAAGAACTGAAGAGCAACTTGTTGGCTAGATTGCTTTCGTCAAGCTATGAAGCAATTGAGAAACTAGTTGATGAAGATAATGCACTATCTTTGAGACAAAATCCGGCTACTTACACAAAAATCTTAACCTCTGCTGTGAGAGGCCTGTATAGAGACCCCCTGAATATGGCCATTGTTCACAGCTCAGTATCCAACCCAACTTAG

Coding sequence (CDS)

ATGGTCGCTGAGGTAGTCCTACAGGAGGGTCAAAGCTTTGATTTCTCTGTAATAACACAACTGGTGACCATGTTGGCGGCTAGACCTTCAAATGAGATCAAAGGCCTAATGTGCCTTGTTTATAGATCACTGGCAGAAGTTGTTGGATCTTACTTTAGGTCAATTTCTGCTTTTCACACAGATGCCAGACCCTTGCTATTATTTCTTGCTACTGGGATCACAGAATCTGTCTGTTCACATGCTTGTGCCTTTGCCCTCCGTAAAATTTGTGAAGATGCAACTGCTGTAATCTTTGAACTGCCAAATTTGGAAATTTTGATTTGGATTGGAGAGAGTCTGGAGAAGTTACATTTACCTTTGGAGGACGAGGAAGAAGTAGTGAGTGCTGTAAGTTTGATTCTTGGTTCAGTTCCTAATAAAGAACTGAAGAGCAACTTGTTGGCTAGATTGCTTTCGTCAAGCTATGAAGCAATTGAGAAACTAGTTGATGAAGATAATGCACTATCTTTGAGACAAAATCCGGCTACTTACACAAAAATCTTAACCTCTGCTGTGAGAGGCCTGTATAGAGACCCCCTGAATATGGCCATTGTTCACAGCTCAGTATCCAACCCAACTTAG

Protein sequence

MVAEVVLQEGQSFDFSVITQLVTMLAARPSNEIKGLMCLVYRSLAEVVGSYFRSISAFHTDARPLLLFLATGITESVCSHACAFALRKICEDATAVIFELPNLEILIWIGESLEKLHLPLEDEEEVVSAVSLILGSVPNKELKSNLLARLLSSSYEAIEKLVDEDNALSLRQNPATYTKILTSAVRGLYRDPLNMAIVHSSVSNPT
Homology
[Close]
BLAST of CsGy3G019930 vs. NCBI nr
Match: KGN57695.1 (hypothetical protein Csa_3G253520 [Cucumis sativus])

HSP 1 Score: 357.5 bits (916), Expect = 3.1e-95
Identity = 189/190 (99.47%), Postives = 190/190 (100.00%), Query Frame = 0 

Query: 1   MVAEVVLQEGQSFDFSVITQLVTMLAARPSNEIKGLMCLVYRSLAEVVGSYFRSISAFHT 60
           +VAEVVLQEGQSFDFSVITQLVTMLAARPSNEIKGLMCLVYRSLAEVVGSYFRSISAFHT
Sbjct: 49  VVAEVVLQEGQSFDFSVITQLVTMLAARPSNEIKGLMCLVYRSLAEVVGSYFRSISAFHT 108

Query: 61  DARPLLLFLATGITESVCSHACAFALRKICEDATAVIFELPNLEILIWIGESLEKLHLPL 120
           DARPLLLFLATGITESVCSHACAFALRKICEDATAVIFELPNLEILIWIGESLEKLHLPL
Sbjct: 109 DARPLLLFLATGITESVCSHACAFALRKICEDATAVIFELPNLEILIWIGESLEKLHLPL 168

Query: 121 EDEEEVVSAVSLILGSVPNKELKSNLLARLLSSSYEAIEKLVDEDNALSLRQNPATYTKI 180
           EDEEEVVSAVSLILGSVPNKELKSNLLARLLSSSYEAIEKLVDEDNALSLRQNPATYTKI
Sbjct: 169 EDEEEVVSAVSLILGSVPNKELKSNLLARLLSSSYEAIEKLVDEDNALSLRQNPATYTKI 228

Query: 181 LTSAVRGLYR 191
           LTSAVRGLYR
Sbjct: 229 LTSAVRGLYR 238

[Close]
BLAST of CsGy3G019930 vs. NCBI nr
Match: XP_011651341.1 (PREDICTED: transportin-3 isoform X1 [Cucumis sativus] >XP_011651342.1 PREDICTED: transportin-3 isoform X1 [Cucumis sativus] >XP_011651343.1 PREDICTED: transportin-3 isoform X1 [Cucumis sativus])

HSP 1 Score: 357.5 bits (916), Expect = 3.1e-95
Identity = 189/190 (99.47%), Postives = 190/190 (100.00%), Query Frame = 0 

Query: 1   MVAEVVLQEGQSFDFSVITQLVTMLAARPSNEIKGLMCLVYRSLAEVVGSYFRSISAFHT 60
           +VAEVVLQEGQSFDFSVITQLVTMLAARPSNEIKGLMCLVYRSLAEVVGSYFRSISAFHT
Sbjct: 468 VVAEVVLQEGQSFDFSVITQLVTMLAARPSNEIKGLMCLVYRSLAEVVGSYFRSISAFHT 527

Query: 61  DARPLLLFLATGITESVCSHACAFALRKICEDATAVIFELPNLEILIWIGESLEKLHLPL 120
           DARPLLLFLATGITESVCSHACAFALRKICEDATAVIFELPNLEILIWIGESLEKLHLPL
Sbjct: 528 DARPLLLFLATGITESVCSHACAFALRKICEDATAVIFELPNLEILIWIGESLEKLHLPL 587

Query: 121 EDEEEVVSAVSLILGSVPNKELKSNLLARLLSSSYEAIEKLVDEDNALSLRQNPATYTKI 180
           EDEEEVVSAVSLILGSVPNKELKSNLLARLLSSSYEAIEKLVDEDNALSLRQNPATYTKI
Sbjct: 588 EDEEEVVSAVSLILGSVPNKELKSNLLARLLSSSYEAIEKLVDEDNALSLRQNPATYTKI 647

Query: 181 LTSAVRGLYR 191
           LTSAVRGLYR
Sbjct: 648 LTSAVRGLYR 657

[Close]
BLAST of CsGy3G019930 vs. NCBI nr
Match: XP_011651344.1 (PREDICTED: transportin-3 isoform X2 [Cucumis sativus])

HSP 1 Score: 357.5 bits (916), Expect = 3.1e-95
Identity = 189/190 (99.47%), Postives = 190/190 (100.00%), Query Frame = 0 

Query: 1   MVAEVVLQEGQSFDFSVITQLVTMLAARPSNEIKGLMCLVYRSLAEVVGSYFRSISAFHT 60
           +VAEVVLQEGQSFDFSVITQLVTMLAARPSNEIKGLMCLVYRSLAEVVGSYFRSISAFHT
Sbjct: 314 VVAEVVLQEGQSFDFSVITQLVTMLAARPSNEIKGLMCLVYRSLAEVVGSYFRSISAFHT 373

Query: 61  DARPLLLFLATGITESVCSHACAFALRKICEDATAVIFELPNLEILIWIGESLEKLHLPL 120
           DARPLLLFLATGITESVCSHACAFALRKICEDATAVIFELPNLEILIWIGESLEKLHLPL
Sbjct: 374 DARPLLLFLATGITESVCSHACAFALRKICEDATAVIFELPNLEILIWIGESLEKLHLPL 433

Query: 121 EDEEEVVSAVSLILGSVPNKELKSNLLARLLSSSYEAIEKLVDEDNALSLRQNPATYTKI 180
           EDEEEVVSAVSLILGSVPNKELKSNLLARLLSSSYEAIEKLVDEDNALSLRQNPATYTKI
Sbjct: 434 EDEEEVVSAVSLILGSVPNKELKSNLLARLLSSSYEAIEKLVDEDNALSLRQNPATYTKI 493

Query: 181 LTSAVRGLYR 191
           LTSAVRGLYR
Sbjct: 494 LTSAVRGLYR 503

[Close]
BLAST of CsGy3G019930 vs. NCBI nr
Match: XP_022148142.1 (transportin-3 isoform X1 [Momordica charantia] >XP_022148143.1 transportin-3 isoform X1 [Momordica charantia])

HSP 1 Score: 347.1 bits (889), Expect = 4.2e-92
Identity = 183/190 (96.32%), Postives = 188/190 (98.95%), Query Frame = 0 

Query: 1   MVAEVVLQEGQSFDFSVITQLVTMLAARPSNEIKGLMCLVYRSLAEVVGSYFRSISAFHT 60
           +VAEVVLQEGQSFDFSVITQLVT+L+ARPSNEIKG+MCLVYRSLAEVVGSYFRSISAFHT
Sbjct: 510 VVAEVVLQEGQSFDFSVITQLVTILSARPSNEIKGIMCLVYRSLAEVVGSYFRSISAFHT 569

Query: 61  DARPLLLFLATGITESVCSHACAFALRKICEDATAVIFELPNLEILIWIGESLEKLHLPL 120
           DARPLLLFLATGITESV SHACAFALRKICEDATAVIFELPNLEILIW+GESLEKLHLPL
Sbjct: 570 DARPLLLFLATGITESVSSHACAFALRKICEDATAVIFELPNLEILIWMGESLEKLHLPL 629

Query: 121 EDEEEVVSAVSLILGSVPNKELKSNLLARLLSSSYEAIEKLVDEDNALSLRQNPATYTKI 180
           EDEEEVVSAVSLILGSVPNKELKSNLLARLLSSSYEAIEKLVDEDNALSLRQNPA YTKI
Sbjct: 630 EDEEEVVSAVSLILGSVPNKELKSNLLARLLSSSYEAIEKLVDEDNALSLRQNPAAYTKI 689

Query: 181 LTSAVRGLYR 191
           LTSAVRGLYR
Sbjct: 690 LTSAVRGLYR 699

[Close]
BLAST of CsGy3G019930 vs. NCBI nr
Match: XP_022148144.1 (transportin-3 isoform X2 [Momordica charantia])

HSP 1 Score: 347.1 bits (889), Expect = 4.2e-92
Identity = 183/190 (96.32%), Postives = 188/190 (98.95%), Query Frame = 0 

Query: 1   MVAEVVLQEGQSFDFSVITQLVTMLAARPSNEIKGLMCLVYRSLAEVVGSYFRSISAFHT 60
           +VAEVVLQEGQSFDFSVITQLVT+L+ARPSNEIKG+MCLVYRSLAEVVGSYFRSISAFHT
Sbjct: 510 VVAEVVLQEGQSFDFSVITQLVTILSARPSNEIKGIMCLVYRSLAEVVGSYFRSISAFHT 569

Query: 61  DARPLLLFLATGITESVCSHACAFALRKICEDATAVIFELPNLEILIWIGESLEKLHLPL 120
           DARPLLLFLATGITESV SHACAFALRKICEDATAVIFELPNLEILIW+GESLEKLHLPL
Sbjct: 570 DARPLLLFLATGITESVSSHACAFALRKICEDATAVIFELPNLEILIWMGESLEKLHLPL 629

Query: 121 EDEEEVVSAVSLILGSVPNKELKSNLLARLLSSSYEAIEKLVDEDNALSLRQNPATYTKI 180
           EDEEEVVSAVSLILGSVPNKELKSNLLARLLSSSYEAIEKLVDEDNALSLRQNPA YTKI
Sbjct: 630 EDEEEVVSAVSLILGSVPNKELKSNLLARLLSSSYEAIEKLVDEDNALSLRQNPAAYTKI 689

Query: 181 LTSAVRGLYR 191
           LTSAVRGLYR
Sbjct: 690 LTSAVRGLYR 699

[Close]
BLAST of CsGy3G019930 vs. TAIR10
Match: AT1G12930.1 (ARM repeat superfamily protein)

HSP 1 Score: 237.7 bits (605), Expect = 6.6e-63
Identity = 125/205 (60.98%), Postives = 162/205 (79.02%), Query Frame = 0 

Query: 2   VAEVVLQEGQSFDFSVITQLVTMLAARPSNEIKGLMCLVYRSLAEVVGSYFRSISAFHTD 61
           V+E++LQEG++FDF++I QLV+  + RPS+E+KG + +VYRSLA+VVGSY R IS F ++
Sbjct: 454 VSEIILQEGEAFDFALIMQLVSAFSVRPSSELKGFISVVYRSLADVVGSYSRWISVFPSN 513

Query: 62  ARPLLLFLATGITESVCSHACAFALRKICEDATAVIFELPNLEILIWIGESLEKLHLPLE 121
           ARPLLLFLA GI+E +CSHACA ALRKICEDA AVI E  NL+IL+WIGE LE+  L LE
Sbjct: 514 ARPLLLFLAGGISEPICSHACASALRKICEDAPAVIQETSNLDILMWIGECLEQWDLTLE 573

Query: 122 DEEEVVSAVSLILGSVPNKELKSNLLARLLSSSYEAIEKLVDEDNALSLRQNPATYTKIL 181
           DEEEV++A+++ILGSV NKEL++ LL +LLSSSY  + KLVDED   S RQ+PATYT++L
Sbjct: 574 DEEEVITAITVILGSVANKELQNKLLTQLLSSSYGVLSKLVDEDAESSGRQSPATYTRML 633

Query: 182 TSAVRGLYRDPLNMAIVHSSVSNPT 207
           +S  RGLYR  +     H + S P+
Sbjct: 634 SSVTRGLYR--IGTVFSHLATSLPS 656

[Close]
BLAST of CsGy3G019930 vs. TrEMBL
Match: tr|A0A0A0L6T7|A0A0A0L6T7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G253520 PE=4 SV=1)

HSP 1 Score: 357.5 bits (916), Expect = 2.1e-95
Identity = 189/190 (99.47%), Postives = 190/190 (100.00%), Query Frame = 0 

Query: 1   MVAEVVLQEGQSFDFSVITQLVTMLAARPSNEIKGLMCLVYRSLAEVVGSYFRSISAFHT 60
           +VAEVVLQEGQSFDFSVITQLVTMLAARPSNEIKGLMCLVYRSLAEVVGSYFRSISAFHT
Sbjct: 49  VVAEVVLQEGQSFDFSVITQLVTMLAARPSNEIKGLMCLVYRSLAEVVGSYFRSISAFHT 108

Query: 61  DARPLLLFLATGITESVCSHACAFALRKICEDATAVIFELPNLEILIWIGESLEKLHLPL 120
           DARPLLLFLATGITESVCSHACAFALRKICEDATAVIFELPNLEILIWIGESLEKLHLPL
Sbjct: 109 DARPLLLFLATGITESVCSHACAFALRKICEDATAVIFELPNLEILIWIGESLEKLHLPL 168

Query: 121 EDEEEVVSAVSLILGSVPNKELKSNLLARLLSSSYEAIEKLVDEDNALSLRQNPATYTKI 180
           EDEEEVVSAVSLILGSVPNKELKSNLLARLLSSSYEAIEKLVDEDNALSLRQNPATYTKI
Sbjct: 169 EDEEEVVSAVSLILGSVPNKELKSNLLARLLSSSYEAIEKLVDEDNALSLRQNPATYTKI 228

Query: 181 LTSAVRGLYR 191
           LTSAVRGLYR
Sbjct: 229 LTSAVRGLYR 238

[Close]
BLAST of CsGy3G019930 vs. TrEMBL
Match: tr|A0A1S3BN70|A0A1S3BN70_CUCME (transportin-3 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103491690 PE=4 SV=1)

HSP 1 Score: 346.3 bits (887), Expect = 4.8e-92
Identity = 184/190 (96.84%), Postives = 187/190 (98.42%), Query Frame = 0 

Query: 1   MVAEVVLQEGQSFDFSVITQLVTMLAARPSNEIKGLMCLVYRSLAEVVGSYFRSISAFHT 60
           +VAEVVLQEGQ+FDF VITQLVTMLAARPSNEIKG+MCLVYRSLAEVVGSYFRSISAFHT
Sbjct: 468 VVAEVVLQEGQTFDFVVITQLVTMLAARPSNEIKGVMCLVYRSLAEVVGSYFRSISAFHT 527

Query: 61  DARPLLLFLATGITESVCSHACAFALRKICEDATAVIFELPNLEILIWIGESLEKLHLPL 120
           DARPLLLFLATGITESV SHACAFALRKICEDATAVIFE PNLEILIWIGESLEKLHLPL
Sbjct: 528 DARPLLLFLATGITESVSSHACAFALRKICEDATAVIFEPPNLEILIWIGESLEKLHLPL 587

Query: 121 EDEEEVVSAVSLILGSVPNKELKSNLLARLLSSSYEAIEKLVDEDNALSLRQNPATYTKI 180
           EDEEEVVSAVSLILGSVPNKELKSNLLARLLSSSYEAIEKLVDEDNALSLRQNPATYTKI
Sbjct: 588 EDEEEVVSAVSLILGSVPNKELKSNLLARLLSSSYEAIEKLVDEDNALSLRQNPATYTKI 647

Query: 181 LTSAVRGLYR 191
           LTSAVRGLYR
Sbjct: 648 LTSAVRGLYR 657

[Close]
BLAST of CsGy3G019930 vs. TrEMBL
Match: tr|A0A1S3BNV6|A0A1S3BNV6_CUCME (transportin-3 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103491690 PE=4 SV=1)

HSP 1 Score: 346.3 bits (887), Expect = 4.8e-92
Identity = 184/190 (96.84%), Postives = 187/190 (98.42%), Query Frame = 0 

Query: 1   MVAEVVLQEGQSFDFSVITQLVTMLAARPSNEIKGLMCLVYRSLAEVVGSYFRSISAFHT 60
           +VAEVVLQEGQ+FDF VITQLVTMLAARPSNEIKG+MCLVYRSLAEVVGSYFRSISAFHT
Sbjct: 314 VVAEVVLQEGQTFDFVVITQLVTMLAARPSNEIKGVMCLVYRSLAEVVGSYFRSISAFHT 373

Query: 61  DARPLLLFLATGITESVCSHACAFALRKICEDATAVIFELPNLEILIWIGESLEKLHLPL 120
           DARPLLLFLATGITESV SHACAFALRKICEDATAVIFE PNLEILIWIGESLEKLHLPL
Sbjct: 374 DARPLLLFLATGITESVSSHACAFALRKICEDATAVIFEPPNLEILIWIGESLEKLHLPL 433

Query: 121 EDEEEVVSAVSLILGSVPNKELKSNLLARLLSSSYEAIEKLVDEDNALSLRQNPATYTKI 180
           EDEEEVVSAVSLILGSVPNKELKSNLLARLLSSSYEAIEKLVDEDNALSLRQNPATYTKI
Sbjct: 434 EDEEEVVSAVSLILGSVPNKELKSNLLARLLSSSYEAIEKLVDEDNALSLRQNPATYTKI 493

Query: 181 LTSAVRGLYR 191
           LTSAVRGLYR
Sbjct: 494 LTSAVRGLYR 503

[Close]
BLAST of CsGy3G019930 vs. TrEMBL
Match: tr|A0A2P4MRV6|A0A2P4MRV6_QUESU (Transportin mos14 OS=Quercus suber OX=58331 GN=CFP56_49191 PE=4 SV=1)

HSP 1 Score: 275.8 bits (704), Expect = 8.0e-71
Identity = 150/206 (72.82%), Postives = 173/206 (83.98%), Query Frame = 0 

Query: 1   MVAEVVLQEGQSFDFSVITQLVTMLAARPSNEIKGLMCLVYRSLAEVVGSYFRSISAFHT 60
           +VAEVVLQEGQSFDFSVI QLVTML+  PS+E+KG +C VYRSLA+VVGSY + ISAF +
Sbjct: 485 VVAEVVLQEGQSFDFSVIMQLVTMLSIWPSDELKGYVCFVYRSLADVVGSYSKLISAFQS 544

Query: 61  DARPLLLFLATGITESVCSHACAFALRKICEDATAVIFELPNLEILIWIGESLEKLHLPL 120
           +AR LLLFLATGI+E + S+ACA ALRKICEDA+AVI+E  NLEIL+W+GE LEK +LPL
Sbjct: 545 NARSLLLFLATGISEPLSSNACASALRKICEDASAVIYEPANLEILMWVGEGLEKRNLPL 604

Query: 121 EDEEEVVSAVSLILGSVPNKELKSNLLARLLSSSYEAIEKLVDEDNALSLRQNPATYTKI 180
           E EEE+VSA+SLILGSVPN+ELK NLLARLLSSSYEAI KLV+EDN  SLRQNPATYT+I
Sbjct: 605 EYEEEIVSAISLILGSVPNQELKGNLLARLLSSSYEAIGKLVEEDNKHSLRQNPATYTQI 664

Query: 181 LTSAVRGLYRDPLNMAIVHSSVSNPT 207
           LTSA RGLYR  +     H   S PT
Sbjct: 665 LTSAARGLYR--MGTVFSHLGTSLPT 688

[Close]
BLAST of CsGy3G019930 vs. TrEMBL
Match: tr|A0A2I4EBP0|A0A2I4EBP0_9ROSI (transportin MOS14 isoform X1 OS=Juglans regia OX=51240 GN=LOC108988134 PE=4 SV=1)

HSP 1 Score: 275.0 bits (702), Expect = 1.4e-70
Identity = 146/190 (76.84%), Postives = 170/190 (89.47%), Query Frame = 0 

Query: 1   MVAEVVLQEGQSFDFSVITQLVTMLAARPSNEIKGLMCLVYRSLAEVVGSYFRSISAFHT 60
           +VAEVVLQEGQ+FDFSVI QL+T+L+ RPS+E+KG MC+VYRSLA+VVGSY + ++AF T
Sbjct: 468 VVAEVVLQEGQTFDFSVIMQLITILSVRPSDELKGFMCIVYRSLADVVGSYSKWMTAFQT 527

Query: 61  DARPLLLFLATGITESVCSHACAFALRKICEDATAVIFELPNLEILIWIGESLEKLHLPL 120
           +ARPLLLFLA+GI+E + S+ACA ALRK+CEDA+AVIFE  NLEIL+WIGESL + HLPL
Sbjct: 528 NARPLLLFLASGISEPLSSNACASALRKVCEDASAVIFEPANLEILMWIGESLMR-HLPL 587

Query: 121 EDEEEVVSAVSLILGSVPNKELKSNLLARLLSSSYEAIEKLVDEDNALSLRQNPATYTKI 180
           E EEEVVSA+SLIL SVPNKELKSNLLARLLSSSYEAI KLVD+DN  SLRQNPATYT+I
Sbjct: 588 EYEEEVVSAISLILSSVPNKELKSNLLARLLSSSYEAIGKLVDDDNKHSLRQNPATYTQI 647

Query: 181 LTSAVRGLYR 191
           L SA RGLYR
Sbjct: 648 LNSAARGLYR 656

The following BLAST results are available for this feature:
BLAST of CsGy3G019930 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN57695.13.1e-9599.47hypothetical protein Csa_3G253520 [Cucumis sativus][more]
XP_011651341.13.1e-9599.47PREDICTED: transportin-3 isoform X1 [Cucumis sativus] >XP_011651342.1 PREDICTED:... [more]
XP_011651344.13.1e-9599.47PREDICTED: transportin-3 isoform X2 [Cucumis sativus][more]
XP_022148142.14.2e-9296.32transportin-3 isoform X1 [Momordica charantia] >XP_022148143.1 transportin-3 iso... [more]
XP_022148144.14.2e-9296.32transportin-3 isoform X2 [Momordica charantia][more]
BLAST of CsGy3G019930 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G12930.16.6e-6360.98ARM repeat superfamily protein[more]
BLAST of CsGy3G019930 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsGy3G019930 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0L6T7|A0A0A0L6T7_CUCSA2.1e-9599.47Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G253520 PE=4 SV=1[more]
tr|A0A1S3BN70|A0A1S3BN70_CUCME4.8e-9296.84transportin-3 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103491690 PE=4 SV=1[more]
tr|A0A1S3BNV6|A0A1S3BNV6_CUCME4.8e-9296.84transportin-3 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103491690 PE=4 SV=1[more]
tr|A0A2P4MRV6|A0A2P4MRV6_QUESU8.0e-7172.82Transportin mos14 OS=Quercus suber OX=58331 GN=CFP56_49191 PE=4 SV=1[more]
tr|A0A2I4EBP0|A0A2I4EBP0_9ROSI1.4e-7076.84transportin MOS14 isoform X1 OS=Juglans regia OX=51240 GN=LOC108988134 PE=4 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR011989ARM-like
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005634 nucleus
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy3G019930.1CsGy3G019930.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011989Armadillo-like helicalGENE3DG3DSA:1.25.10.10coord: 1..205
e-value: 7.4E-22
score: 79.2
NoneNo IPR availablePANTHERPTHR12363TRANSPORTIN 3 AND IMPORTIN 13coord: 6..188
NoneNo IPR availablePANTHERPTHR12363:SF33IMPORTIN-13coord: 6..188

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsGy3G019930Cla97C05G094150Watermelon (97103) v2cgybwmbB209
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsGy3G019930Wax gourdcgybwgoB278
CsGy3G019930Cucurbita maxima (Rimu)cgybcmaB308
CsGy3G019930Cucurbita moschata (Rifu)cgybcmoB281
CsGy3G019930Cucurbita pepo (Zucchini)cgybcpeB397
CsGy3G019930Cucumber (Chinese Long) v2cgybcuB109
CsGy3G019930Bottle gourd (USVL1VR-Ls)cgyblsiB199
CsGy3G019930Melon (DHL92) v3.5.1cgybmeB212
CsGy3G019930Melon (DHL92) v3.6.1cgybmedB208
CsGy3G019930Watermelon (Charleston Gray)cgybwcgB217
CsGy3G019930Watermelon (97103) v1cgybwmB233
CsGy3G019930Wild cucumber (PI 183967)cgybcpiB110
CsGy3G019930Silver-seed gourdcarcgybB0489
CsGy3G019930Cucumber (Chinese Long) v3cgybcucB117