CsGy3G019540 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy3G019540
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Uncharacterized protein
Location	Chr3 : 15744396 .. 15746536 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAATTTGCTGATCATTTCTGATCCACCTTCACATGGAAAAATTGCCAACCGAAATCTGCTTCAAGATTTTCTGTTTCTTGGATTCCCAGAACCTTGCAACCGCACTTCAAGGTCAGCAAGATGTTTTCTTTGAATTAAAATTCTTTTTTCTTTCTTGAATTACATGGGTAATTATTCTTGAATTTGATGGTTTATGAGGTCCTGCCTTTCTGATTGATGTTTTTCTTAGTTTTTGATACAAAGATCTGTTTCTGTGTTCACAATTCTGCTATTAATTCATTGTGTATTCTTGCTAATTTGTGTTGAATTTAACATTCTTCTGTTCATAGGATATTGAACAGAATATATTAATTTCCTGGTTTAATTTTTTTGTAACCTATACATATGTTTCCCTTGGTCTCTTGCTCATTACTTGAGTTATCCCCTGAATTTATATTTAGATTAAAATATCTTGAAGGTATTTGTGGAAGTTAGAATGCTTGGCATGGGGAAACCAGTTTTCAACAAGTTTTATGGAGAATGTCTTGTTTAGAACTCATAAACCCTCCTAACTTAAATCACATCCAATATCATTGGAACTTAATAGACAGAAACGATCGTGTGTATCATCTGTTATGGAACTTTTGCCTAGATCTGATAAAATTTTAGAGAGATCATCTAGGGGGTTTGACATCCCCCCAATCTAATGGTTGGAAGGTTGTATTTTGATCGGTAGCATTGATATGGCAAAGTTCCTAACTGAACCCCCCGTCCCCACTATTATCTAATGCTTCACTTGTGTATATTGGTAGCAACGATAAAATAGAAAGGTTGTATTTTGGGTGGTAGCAATGATATACCAAAGTTCCTAATTGAACTCCCCAACCCCACTCTTTCATTTGATACTTCACTCCTTCATTTAATACTTCAGATGGTATATAGGTTGCAATGATAACATAGGAAGGTCGTATTTTGATTGGTAGCAATGATGTACCAAGGTTTCTAATTGATCCCTAGATGAGAAAGGAAGTCCTCTTTCTAACCCAGATGGGATATCCCTTAGTTAAAGATGCCCTTCCCCTTCAACCTATAAGAAGTAAAGAGGTTCTTCGGAGAGTAGAGAGACATGATAATGAGGAACGTCCTTTACCTTTGGTTGTTACTCTCTATTAATAGGACCATTGAACTTTTGACAGTGAACCAACTAAAAGTAGAATTGAATTTCTAAGAGGAAGTTTATGATGCTATTGAACGGCAACACGGGGACCAAGATGAATAGATGAATAAATAAATTACAGGAATGAAAACTGAATTGTCTCTTGAATTTCCTCAACAGTTGATCCCGATTGTCTGTTGATTTATTGTTTCAATTTACCTTTAGCTATTAACACAGCAACCTGCTGCTTGAAGTTTGCAGGAAGTGGAACTCCTTAGCTTCAGACAATATCTTGTGGTCAAATTTATTCAAGGAGAGGTGGGGAGAAGACCATGCTGCATTTTATCACCCAATTGGTTCAAAGTCATGGAAGGATTCATATGAGGTGCAAGATCGATGTGATCGATTTGGACTGTGAGTCGTATTCTTCTTCTTATTACTGGAGACCTACTTCAGTGCTAGACATTTCTGGTTGCAAACACATCCATTATGATTTCTTAATTCTTTGATTGGTTATAATTTGAGATCTTATACAATGCAAGTTTTGAAGCAACGTATTTGTTAAAATTTACCAAAAGGCTAATGTTTTGAAGCAACCTGTTAGCGTTAGCTTAAATATTGTGTCTTCTGGGTTAATGTTTCACAAGAAAATCCATGTTTTATAATACTAAAATTAGAATAGAGATTTGAATCATAATTTATGATTAAAGTATATGTTTATCTGTGCCCCATATGACATGGCAACTGTAACCAGGGGCCTAAGAATTATCCGAGAAGGGAATGACTACTATCTCATTCACCAAGGTGAAATCCAGAGGCACCTAGGTTCAAGAAGACAAAAGAATGGACAGACCAGTTTTCTTCCTTTGAGTTCGAAAAGAGAGTTCCTATCAGAAGGACTTCTCGAAGAAGACAAATCCTGTCGAGGAATTCTGGACAGGATCCTTTTCTTCATTGGAGACTTGGAAGTTGCTTCCACAGATGCAAAGCGTAGCAGGTCTCTGTG

mRNA sequence

GAATTTGCTGATCATTTCTGATCCACCTTCACATGGAAAAATTGCCAACCGAAATCTGCTTCAAGATTTTCTGTTTCTTGGATTCCCAGAACCTTGCAACCGCACTTCAAGGAAGTGGAACTCCTTAGCTTCAGACAATATCTTGTGGTCAAATTTATTCAAGGAGAGGTGGGGAGAAGACCATGCTGCATTTTATCACCCAATTGGTTCAAAGTCATGGAAGGATTCATATGAGGTGCAAGATCGATGTGATCGATTTGGACTGGGCCTAAGAATTATCCGAGAAGGGAATGACTACTATCTCATTCACCAAGGTGAAATCCAGAGGCACCTAGGTTCAAGAAGACAAAAGAATGGACAGACCAGTTTTCTTCCTTTGAGTTCGAAAAGAGAGTTCCTATCAGAAGGACTTCTCGAAGAAGACAAATCCTGTCGAGGAATTCTGGACAGGATCCTTTTCTTCATTGGAGACTTGGAAGTTGCTTCCACAGATGCAAAGCGTAGCAGGTCTCTGTG

Coding sequence (CDS)

ATGGAAAAATTGCCAACCGAAATCTGCTTCAAGATTTTCTGTTTCTTGGATTCCCAGAACCTTGCAACCGCACTTCAAGGAAGTGGAACTCCTTAG

Protein sequence

MEKLPTEICFKIFCFLDSQNLATALQGSGTP

Homology

[Close]

BLAST of CsGy3G019540 vs. NCBI nr
Match: XP_004146236.1 (PREDICTED: F-box/WD repeat-containing protein pof1 [Cucumis sativus] >XP_011651306.1 PREDICTED: F-box/WD repeat-containing protein pof1 [Cucumis sativus] >KGN57647.1 hypothetical protein Csa_3G238130 [Cucumis sativus])

HSP 1 Score: 58.2 bits (139), Expect = 5.9e-06
Identity = 26/26 (100.00%), Postives = 26/26 (100.00%), Query Frame = 0


Query: 1  MEKLPTEICFKIFCFLDSQNLATALQ 27
          MEKLPTEICFKIFCFLDSQNLATALQ
Sbjct: 1  MEKLPTEICFKIFCFLDSQNLATALQ 26

[Close]

BLAST of CsGy3G019540 vs. NCBI nr
Match: XP_008455999.1 (PREDICTED: uncharacterized protein LOC103496056 [Cucumis melo])

HSP 1 Score: 55.8 bits (133), Expect = 2.9e-05
Identity = 25/26 (96.15%), Postives = 25/26 (96.15%), Query Frame = 0


Query: 1  MEKLPTEICFKIFCFLDSQNLATALQ 27
          MEKLPTEIC KIFCFLDSQNLATALQ
Sbjct: 1  MEKLPTEICLKIFCFLDSQNLATALQ 26

[Close]

BLAST of CsGy3G019540 vs. NCBI nr
Match: XP_022923080.1 (F-box protein SKIP31-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 50.8 bits (120), Expect = 9.5e-04
Identity = 22/26 (84.62%), Postives = 24/26 (92.31%), Query Frame = 0


Query: 1  MEKLPTEICFKIFCFLDSQNLATALQ 27
          ME+LP EIC KIFCFLDSQ+LATALQ
Sbjct: 6  MERLPAEICLKIFCFLDSQSLATALQ 31

[Close]

BLAST of CsGy3G019540 vs. TrEMBL
Match: tr|A0A0A0LAG9|A0A0A0LAG9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G238130 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 3.9e-06
Identity = 26/26 (100.00%), Postives = 26/26 (100.00%), Query Frame = 0


Query: 1  MEKLPTEICFKIFCFLDSQNLATALQ 27
          MEKLPTEICFKIFCFLDSQNLATALQ
Sbjct: 1  MEKLPTEICFKIFCFLDSQNLATALQ 26

[Close]

BLAST of CsGy3G019540 vs. TrEMBL
Match: tr|A0A1S3C264|A0A1S3C264_CUCME (uncharacterized protein LOC103496056 OS=Cucumis melo OX=3656 GN=LOC103496056 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 1.9e-05
Identity = 25/26 (96.15%), Postives = 25/26 (96.15%), Query Frame = 0


Query: 1  MEKLPTEICFKIFCFLDSQNLATALQ 27
          MEKLPTEIC KIFCFLDSQNLATALQ
Sbjct: 1  MEKLPTEICLKIFCFLDSQNLATALQ 26

[Close]

BLAST of CsGy3G019540 vs. TrEMBL
Match: tr|A0A2N9IVY4|A0A2N9IVY4_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS56181 PE=4 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 8.2e-04
Identity = 22/27 (81.48%), Postives = 22/27 (81.48%), Query Frame = 0


Query: 1  MEKLPTEICFKIFCFLDSQNLATALQG 28
          ME LP EIC KIFCFLD QNLATA QG
Sbjct: 4  MENLPVEICLKIFCFLDQQNLATAQQG 30

The following BLAST results are available for this feature:

BLAST of CsGy3G019540 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004146236.1	5.9e-06	100.00	PREDICTED: F-box/WD repeat-containing protein pof1 [Cucumis sativus] >XP_0116513...	[more]
XP_008455999.1	2.9e-05	96.15	PREDICTED: uncharacterized protein LOC103496056 [Cucumis melo]	[more]
XP_022923080.1	9.5e-04	84.62	F-box protein SKIP31-like isoform X1 [Cucurbita moschata]	[more]

BLAST of CsGy3G019540 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsGy3G019540 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy3G019540 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LAG9\|A0A0A0LAG9_CUCSA	3.9e-06	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G238130 PE=4 SV=1	[more]
tr\|A0A1S3C264\|A0A1S3C264_CUCME	1.9e-05	96.15	uncharacterized protein LOC103496056 OS=Cucumis melo OX=3656 GN=LOC103496056 PE=...	[more]
tr\|A0A2N9IVY4\|A0A2N9IVY4_FAGSY	8.2e-04	81.48	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS56181 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR036047	F-box-like_dom_sf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy3G019540.1	CsGy3G019540.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036047	F-box-like domain superfamily	SUPERFAMILY	SSF81383	F-box domain	coord: 2..26

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy3G019540	CsaV3_3G019660	Cucumber (Chinese Long) v3	cgybcucB117

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy3G019540	Cucumber (Gy14) v2	cgybcgybB088
CsGy3G019540	Cucurbita maxima (Rimu)	cgybcmaB333
CsGy3G019540	Cucurbita maxima (Rimu)	cgybcmaB357
CsGy3G019540	Cucurbita moschata (Rifu)	cgybcmoB304
CsGy3G019540	Cucurbita moschata (Rifu)	cgybcmoB328
CsGy3G019540	Cucurbita pepo (Zucchini)	cgybcpeB285
CsGy3G019540	Cucurbita pepo (Zucchini)	cgybcpeB318
CsGy3G019540	Cucurbita pepo (Zucchini)	cgybcpeB430
CsGy3G019540	Cucumber (Chinese Long) v2	cgybcuB109
CsGy3G019540	Bottle gourd (USVL1VR-Ls)	cgyblsiB139
CsGy3G019540	Bottle gourd (USVL1VR-Ls)	cgyblsiB198
CsGy3G019540	Melon (DHL92) v3.5.1	cgybmeB210
CsGy3G019540	Melon (DHL92) v3.6.1	cgybmedB142
CsGy3G019540	Melon (DHL92) v3.6.1	cgybmedB215
CsGy3G019540	Watermelon (Charleston Gray)	cgybwcgB214
CsGy3G019540	Watermelon (97103) v1	cgybwmB229
CsGy3G019540	Wild cucumber (PI 183967)	cgybcpiB110
CsGy3G019540	Silver-seed gourd	carcgybB0543
CsGy3G019540	Silver-seed gourd	carcgybB0974
CsGy3G019540	Cucumber (Chinese Long) v3	cgybcucB133
CsGy3G019540	Watermelon (97103) v2	cgybwmbB169
CsGy3G019540	Watermelon (97103) v2	cgybwmbB206
CsGy3G019540	Wax gourd	cgybwgoB251
CsGy3G019540	Wax gourd	cgybwgoB271