CsGy3G019120 (gene) Cucumber (Gy14) v2

NameCsGy3G019120
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
Descriptionputative disease resistance protein RGA4
LocationChr3 : 15320090 .. 15321513 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTAAAAAGGCAATAGAAGATGTTGGTGATGATTATTTCAAAGAACTACTAGGGAGGTCATTTTTTCAAGACATAAGAAAAAACAAATGGGGAGAGATCAAGAAGTTCAAGATGCATGACATTATACACGATTTTGCATGGTCTGTTGTACACTAAGTTCAAGATGCATGACATTATACACTAAGTCCATAGACAAAAGGACTCAACATGTGTCAATTTGGGCTTTCATCTCAATGACAAGATGGAAACTCATTGCATAATCATTAATAGAGGCAAAGAATTTGAGAAGATTGAACTGTGCTCGTGAAGAAATCAACCTATCTAGTAATTTGCAGTTACGAACATTGAATTTGGAGTTTCCTTTTCATGTTTCCAAGTGTATTGGTAAGATGAAATATTTTAGATATATTAATATTACATATTGTAGTATTGTTTTCCTTCCCAAGGTAGTTACACAATTGTACCATTTCGACATGTCTACTATGACATTTGTGTATATCACAAAATGGAGAGAGGAAAAAAAACTGTCACAAAATGTAAAATTTCGCATTTCTAATAGAAAAAGACGAAATTTTTCAGATAATACATTCGGCGACAGTTATTTGATGTCATAGAAAAAAACATAAAATAATATTTTATTTTTTATTAAAAAATAATAAATAAAGATTAGAAATTTAGAAAATATTTGCCCAAATTCTAAACCCTTATTATTTTCTTCAATTCTCGCGCGAAGTATCCATCTCCAATTTGACCGTCTTCCGGCCCCGTCCCCATCCGCCCCTATTTGTGACCATCTGTTCACTTCGGCGTGGCCGTCTATTTGCTTCGACGTGCCGATCTGTTCACTCCATCGCTGCCATTAACGAACAACGAAACCCCCGCAATCCCTGCGCAATCTCCAAACCTTTTCAATTCGTTCCCGTCTTCTTCGGCGCTGCCATTCGTGCCCCTCTTCTTCGTCGCTGCCATTCGTGCCCCTCGTCACCTCCTCTGCTGGTAAGCTTCTATTCTTTCTCTCTTTGTTCCTCTCTCTGTGACGGTTTGATTCTGTGTTGATAGTGTACATTGAAATTTAATTTTATTTATCGAAAGTCCCATTGACTGGCTCCAATTTCCAATATGGTTGACCCAATCCAATTTCTATTTCAAATCTAGATCTACCCTTCGTCCCTAGACCTTAGCTTTTGTTCTATTTCAAATCCATACACACACACCCAAGTTTCATGTGTTCATGGATGGGGGATGTATTAAATATTATTACAATAACCAACATATATAGTAGTAGTACTAGTGCTATGTGGAGTTAACATACAAATCATTGGATGTTATTAGAAACTAATTATGCCAAGTTTATATGTTGTTGTAGGATAGATTTGATTTTGAATATAATGAAATGGAATGAGTTGTTGCAATATATTCTGTAA

mRNA sequence

ATTAAAAAGGCAATAGAAGATGTTGGTGATGATTATTTCAAAGAACTACTAGGGAGGTCATTTTTTCAAGACATAAGAAAAAACAAATGGGGAGAGATCAAGAAGTTCAAGATGCATGACATTATACACGATTTTGCATGGTCTGTTGCAAAGAATTTGAGAAGATTGAACTGTGCTCGTGAAGAAATCAACCTATCTAGTAATTTGCAGTTACGAACATTGAATTTGGAGTTTCCTTTTCATGTTTCCAAGATAGATTTGATTTTGAATATAATGAAATGGAATGAGTTGTTGCAATATATTCTGTAA

Coding sequence (CDS)

ATTAAAAAGGCAATAGAAGATGTTGGTGATGATTATTTCAAAGAACTACTAGGGAGGTCATTTTTTCAAGACATAAGAAAAAACAAATGGGGAGAGATCAAGAAGTTCAAGATGCATGACATTATACACGATTTTGCATGGTCTGTTGCAAAGAATTTGAGAAGATTGAACTGTGCTCGTGAAGAAATCAACCTATCTAGTAATTTGCAGTTACGAACATTGAATTTGGAGTTTCCTTTTCATGTTTCCAAGATAGATTTGATTTTGAATATAATGAAATGGAATGAGTTGTTGCAATATATTCTGTAA

Protein sequence

IKKAIEDVGDDYFKELLGRSFFQDIRKNKWGEIKKFKMHDIIHDFAWSVAKNLRRLNCAREEINLSSNLQLRTLNLEFPFHVSKIDLILNIMKWNELLQYIL
BLAST of CsGy3G019120 vs. NCBI nr
Match: XP_008450703.1 (PREDICTED: putative disease resistance protein RGA4 [Cucumis melo])

HSP 1 Score: 109.8 bits (273), Expect = 5.7e-21
Identity = 61/125 (48.80%), Postives = 74/125 (59.20%), Query Frame = 0

Query: 2   KKAIEDVGDDYFKELLGRSFFQDIRKNKWGEIKKFKMHDIIHDFAWSV------------ 61
           KK +EDVGDDYFKELLGRSFFQDI+KNKWGEIK+FK+HD +HD A SV            
Sbjct: 460 KKTMEDVGDDYFKELLGRSFFQDIKKNKWGEIKEFKIHDFMHDLACSVVENVCVLTNDDT 519

Query: 62  ------------------------------AKNLRRLNCAREEINLSSNLQLRTLNLEFP 85
                                         AKNLR LN A ++I+LS++LQLRTLN++F 
Sbjct: 520 KTIDKRTRHVSISTFISKTRWKVITESLKEAKNLRTLNYACDKIDLSNHLQLRTLNVDFL 579

BLAST of CsGy3G019120 vs. NCBI nr
Match: KGN47681.1 (hypothetical protein Csa_6G375730 [Cucumis sativus])

HSP 1 Score: 108.2 bits (269), Expect = 1.6e-20
Identity = 65/122 (53.28%), Postives = 71/122 (58.20%), Query Frame = 0

Query: 2   KKAIEDVGDDYFKELLGRSFFQDIRKNKWGEIKKFKMHDIIHDFAWSV------------ 61
           KKA+EDVGDDYF+ELLGRSFFQDIRKNKWGEI KFKMHDIIHD A SV            
Sbjct: 295 KKAMEDVGDDYFEELLGRSFFQDIRKNKWGEINKFKMHDIIHDLACSVVENDCVLANDDT 354

Query: 62  ------------------------------AKNLRRLNCA-REEINLSSNLQLRTLNLEF 81
                                         AKNLR LN A R  I+LS++L+LRTLNLEF
Sbjct: 355 KSIDKRTRHVSISAFNSMTRWKLITKSLIEAKNLRTLNYARRHHIDLSNHLRLRTLNLEF 414

BLAST of CsGy3G019120 vs. NCBI nr
Match: XP_011658447.1 (PREDICTED: disease resistance protein RGA2-like [Cucumis sativus])

HSP 1 Score: 108.2 bits (269), Expect = 1.6e-20
Identity = 65/122 (53.28%), Postives = 71/122 (58.20%), Query Frame = 0

Query: 2   KKAIEDVGDDYFKELLGRSFFQDIRKNKWGEIKKFKMHDIIHDFAWSV------------ 61
           KKA+EDVGDDYF+ELLGRSFFQDIRKNKWGEI KFKMHDIIHD A SV            
Sbjct: 417 KKAMEDVGDDYFEELLGRSFFQDIRKNKWGEINKFKMHDIIHDLACSVVENDCVLANDDT 476

Query: 62  ------------------------------AKNLRRLNCA-REEINLSSNLQLRTLNLEF 81
                                         AKNLR LN A R  I+LS++L+LRTLNLEF
Sbjct: 477 KSIDKRTRHVSISAFNSMTRWKLITKSLIEAKNLRTLNYARRHHIDLSNHLRLRTLNLEF 536

BLAST of CsGy3G019120 vs. NCBI nr
Match: XP_016900955.1 (PREDICTED: putative disease resistance protein RGA3 [Cucumis melo])

HSP 1 Score: 105.9 bits (263), Expect = 8.2e-20
Identity = 66/137 (48.18%), Postives = 76/137 (55.47%), Query Frame = 0

Query: 2   KKAIEDVGDDYFKELLGRSFFQDIRKNKWGEIKKFKMHDIIHDFAWSV------------ 61
           KK +EDVGDDYFKEL+GRSFFQDIRKNKWGEIK+FKMHDIIHD A SV            
Sbjct: 259 KKTMEDVGDDYFKELMGRSFFQDIRKNKWGEIKEFKMHDIIHDLACSVVENDCVLANDDT 318

Query: 62  --------------------------AKNLRRLNCARE-------EINLSSNLQLRTLNL 94
                                     AKNLR LN A E       EI+LS++L+LRTLNL
Sbjct: 319 KSIDKRTRLVSISKTRWEVVKESLIKAKNLRTLNNASENYVGGKIEIDLSNHLRLRTLNL 378

BLAST of CsGy3G019120 vs. NCBI nr
Match: XP_008465509.1 (PREDICTED: putative disease resistance protein RGA1 [Cucumis melo])

HSP 1 Score: 93.6 bits (231), Expect = 4.2e-16
Identity = 42/51 (82.35%), Postives = 46/51 (90.20%), Query Frame = 0

Query: 2   KKAIEDVGDDYFKELLGRSFFQDIRKNKWGEIKKFKMHDIIHDFAWSVAKN 53
           KKAIEDVGDDYFKEL GRSFFQDIRKNKWG+IKK KMHD+IHD A S+ +N
Sbjct: 341 KKAIEDVGDDYFKELAGRSFFQDIRKNKWGDIKKCKMHDLIHDLACSMVEN 391

BLAST of CsGy3G019120 vs. TAIR10
Match: AT3G07040.1 (NB-ARC domain-containing disease resistance protein)

HSP 1 Score: 45.1 bits (105), Expect = 3.1e-05
Identity = 22/46 (47.83%), Postives = 29/46 (63.04%), Query Frame = 0

Query: 6   EDVGDDYFKELLGRSFFQDIRKNKWGEIKKFKMHDIIHDFAWSVAK 52
           E+V D Y  EL+ R+  Q I  N +G  K FKMHD+I + A SV+K
Sbjct: 471 EEVADSYLNELVYRNMLQVILWNPFGRPKAFKMHDVIWEIALSVSK 516

BLAST of CsGy3G019120 vs. Swiss-Prot
Match: sp|Q7XBQ9|RGA2_SOLBU (Disease resistance protein RGA2 OS=Solanum bulbocastanum OX=147425 GN=RGA2 PE=1 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 5.1e-05
Identity = 29/63 (46.03%), Postives = 39/63 (61.90%), Query Frame = 0

Query: 5   IEDVGDDYFKELLGRSFFQDIRKNKWGEIKK----FKMHDIIHDFAWSV------AKNLR 58
           +EDVGD+ +KEL  RSFFQ+I      E+K     FKMHD+IHD A S+      + N+R
Sbjct: 442 LEDVGDEVWKELYLRSFFQEI------EVKDGKTYFKMHDLIHDLATSLFSANTSSSNIR 498

BLAST of CsGy3G019120 vs. Swiss-Prot
Match: sp|Q7XA40|RGA3_SOLBU (Putative disease resistance protein RGA3 OS=Solanum bulbocastanum OX=147425 GN=RGA3 PE=2 SV=2)

HSP 1 Score: 45.4 bits (106), Expect = 4.3e-04
Identity = 27/68 (39.71%), Postives = 42/68 (61.76%), Query Frame = 0

Query: 5   IEDVGDDYFKELLGRSFFQDIRKNKWGEIKK----FKMHDIIHDFAWSV------AKNLR 63
           +EDVG++ + EL  RSFFQ+I      E+K     FKMHD+IHD A S+      ++++R
Sbjct: 441 LEDVGNEVWNELYLRSFFQEI------EVKSGKTYFKMHDLIHDLATSMFSASASSRSIR 500

BLAST of CsGy3G019120 vs. Swiss-Prot
Match: sp|Q39214|RPM1_ARATH (Disease resistance protein RPM1 OS=Arabidopsis thaliana OX=3702 GN=RPM1 PE=1 SV=1)

HSP 1 Score: 45.1 bits (105), Expect = 5.6e-04
Identity = 22/46 (47.83%), Postives = 29/46 (63.04%), Query Frame = 0

Query: 6   EDVGDDYFKELLGRSFFQDIRKNKWGEIKKFKMHDIIHDFAWSVAK 52
           E+V D Y  EL+ R+  Q I  N +G  K FKMHD+I + A SV+K
Sbjct: 471 EEVADSYLNELVYRNMLQVILWNPFGRPKAFKMHDVIWEIALSVSK 516

BLAST of CsGy3G019120 vs. Swiss-Prot
Match: sp|Q7XA42|RGA1_SOLBU (Putative disease resistance protein RGA1 OS=Solanum bulbocastanum OX=147425 GN=RGA1 PE=2 SV=2)

HSP 1 Score: 44.3 bits (103), Expect = 9.5e-04
Identity = 25/59 (42.37%), Postives = 35/59 (59.32%), Query Frame = 0

Query: 5   IEDVGDDYFKELLGRSFFQDIRKNKWGEIKKFKMHDIIHDFAWSV------AKNLRRLN 58
           +EDVG++ + EL  RSFFQ+I          FKMHD+IHD A S+      + N+R +N
Sbjct: 441 LEDVGNEVWNELYLRSFFQEIEVESGKTY--FKMHDLIHDLATSLFSANTSSSNIREIN 497

BLAST of CsGy3G019120 vs. TrEMBL
Match: tr|A0A1S3BPS1|A0A1S3BPS1_CUCME (putative disease resistance protein RGA4 OS=Cucumis melo OX=3656 GN=LOC103492203 PE=3 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 3.7e-21
Identity = 61/125 (48.80%), Postives = 74/125 (59.20%), Query Frame = 0

Query: 2   KKAIEDVGDDYFKELLGRSFFQDIRKNKWGEIKKFKMHDIIHDFAWSV------------ 61
           KK +EDVGDDYFKELLGRSFFQDI+KNKWGEIK+FK+HD +HD A SV            
Sbjct: 460 KKTMEDVGDDYFKELLGRSFFQDIKKNKWGEIKEFKIHDFMHDLACSVVENVCVLTNDDT 519

Query: 62  ------------------------------AKNLRRLNCAREEINLSSNLQLRTLNLEFP 85
                                         AKNLR LN A ++I+LS++LQLRTLN++F 
Sbjct: 520 KTIDKRTRHVSISTFISKTRWKVITESLKEAKNLRTLNYACDKIDLSNHLQLRTLNVDFL 579

BLAST of CsGy3G019120 vs. TrEMBL
Match: tr|A0A0A0KIT2|A0A0A0KIT2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G375730 PE=3 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 1.1e-20
Identity = 65/122 (53.28%), Postives = 71/122 (58.20%), Query Frame = 0

Query: 2   KKAIEDVGDDYFKELLGRSFFQDIRKNKWGEIKKFKMHDIIHDFAWSV------------ 61
           KKA+EDVGDDYF+ELLGRSFFQDIRKNKWGEI KFKMHDIIHD A SV            
Sbjct: 295 KKAMEDVGDDYFEELLGRSFFQDIRKNKWGEINKFKMHDIIHDLACSVVENDCVLANDDT 354

Query: 62  ------------------------------AKNLRRLNCA-REEINLSSNLQLRTLNLEF 81
                                         AKNLR LN A R  I+LS++L+LRTLNLEF
Sbjct: 355 KSIDKRTRHVSISAFNSMTRWKLITKSLIEAKNLRTLNYARRHHIDLSNHLRLRTLNLEF 414

BLAST of CsGy3G019120 vs. TrEMBL
Match: tr|A0A1S4DZ06|A0A1S4DZ06_CUCME (putative disease resistance protein RGA3 OS=Cucumis melo OX=3656 GN=LOC103492522 PE=3 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 5.4e-20
Identity = 66/137 (48.18%), Postives = 76/137 (55.47%), Query Frame = 0

Query: 2   KKAIEDVGDDYFKELLGRSFFQDIRKNKWGEIKKFKMHDIIHDFAWSV------------ 61
           KK +EDVGDDYFKEL+GRSFFQDIRKNKWGEIK+FKMHDIIHD A SV            
Sbjct: 259 KKTMEDVGDDYFKELMGRSFFQDIRKNKWGEIKEFKMHDIIHDLACSVVENDCVLANDDT 318

Query: 62  --------------------------AKNLRRLNCARE-------EINLSSNLQLRTLNL 94
                                     AKNLR LN A E       EI+LS++L+LRTLNL
Sbjct: 319 KSIDKRTRLVSISKTRWEVVKESLIKAKNLRTLNNASENYVGGKIEIDLSNHLRLRTLNL 378

BLAST of CsGy3G019120 vs. TrEMBL
Match: tr|A0A1S3CNY8|A0A1S3CNY8_CUCME (putative disease resistance protein RGA1 OS=Cucumis melo OX=3656 GN=LOC103503129 PE=3 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 2.8e-16
Identity = 42/51 (82.35%), Postives = 46/51 (90.20%), Query Frame = 0

Query: 2   KKAIEDVGDDYFKELLGRSFFQDIRKNKWGEIKKFKMHDIIHDFAWSVAKN 53
           KKAIEDVGDDYFKEL GRSFFQDIRKNKWG+IKK KMHD+IHD A S+ +N
Sbjct: 341 KKAIEDVGDDYFKELAGRSFFQDIRKNKWGDIKKCKMHDLIHDLACSMVEN 391

BLAST of CsGy3G019120 vs. TrEMBL
Match: tr|A0A1S3CEG6|A0A1S3CEG6_CUCME (disease resistance protein RGA2-like OS=Cucumis melo OX=3656 GN=LOC103499950 PE=3 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 1.1e-15
Identity = 41/51 (80.39%), Postives = 46/51 (90.20%), Query Frame = 0

Query: 2   KKAIEDVGDDYFKELLGRSFFQDIRKNKWGEIKKFKMHDIIHDFAWSVAKN 53
           +KAIEDVGDDYFKELLGRSFFQDIRKNKWG+IKK KMHD+IHD A  + +N
Sbjct: 183 EKAIEDVGDDYFKELLGRSFFQDIRKNKWGDIKKCKMHDLIHDLALLMVEN 233

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_008450703.15.7e-2148.80PREDICTED: putative disease resistance protein RGA4 [Cucumis melo][more]
KGN47681.11.6e-2053.28hypothetical protein Csa_6G375730 [Cucumis sativus][more]
XP_011658447.11.6e-2053.28PREDICTED: disease resistance protein RGA2-like [Cucumis sativus][more]
XP_016900955.18.2e-2048.18PREDICTED: putative disease resistance protein RGA3 [Cucumis melo][more]
XP_008465509.14.2e-1682.35PREDICTED: putative disease resistance protein RGA1 [Cucumis melo][more]
Match NameE-valueIdentityDescription
AT3G07040.13.1e-0547.83NB-ARC domain-containing disease resistance protein[more]
Match NameE-valueIdentityDescription
sp|Q7XBQ9|RGA2_SOLBU5.1e-0546.03Disease resistance protein RGA2 OS=Solanum bulbocastanum OX=147425 GN=RGA2 PE=1 ... [more]
sp|Q7XA40|RGA3_SOLBU4.3e-0439.71Putative disease resistance protein RGA3 OS=Solanum bulbocastanum OX=147425 GN=R... [more]
sp|Q39214|RPM1_ARATH5.6e-0447.83Disease resistance protein RPM1 OS=Arabidopsis thaliana OX=3702 GN=RPM1 PE=1 SV=... [more]
sp|Q7XA42|RGA1_SOLBU9.5e-0442.37Putative disease resistance protein RGA1 OS=Solanum bulbocastanum OX=147425 GN=R... [more]
Match NameE-valueIdentityDescription
tr|A0A1S3BPS1|A0A1S3BPS1_CUCME3.7e-2148.80putative disease resistance protein RGA4 OS=Cucumis melo OX=3656 GN=LOC103492203... [more]
tr|A0A0A0KIT2|A0A0A0KIT2_CUCSA1.1e-2053.28Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G375730 PE=3 SV=1[more]
tr|A0A1S4DZ06|A0A1S4DZ06_CUCME5.4e-2048.18putative disease resistance protein RGA3 OS=Cucumis melo OX=3656 GN=LOC103492522... [more]
tr|A0A1S3CNY8|A0A1S3CNY8_CUCME2.8e-1682.35putative disease resistance protein RGA1 OS=Cucumis melo OX=3656 GN=LOC103503129... [more]
tr|A0A1S3CEG6|A0A1S3CEG6_CUCME1.1e-1580.39disease resistance protein RGA2-like OS=Cucumis melo OX=3656 GN=LOC103499950 PE=... [more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0043531 ADP binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy3G019120.1CsGy3G019120.1mRNA


Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR23155LEUCINE-RICH REPEAT-CONTAINING PROTEINcoord: 5..68
NoneNo IPR availablePANTHERPTHR23155:SF863SUBFAMILY NOT NAMEDcoord: 5..68

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None