CsGy3G019100 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy3G019100
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	COBRA-like protein
Location	Chr3 : 15305331 .. 15305727 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CGCCTCCATTGCTGAGATTATCCCATCACAGATTTTATTCAATATCCGCCGGTTTCCCTATTTGAGGGTTTTCAATATCTTGTTTTGGGCATGGAGAACCAGTTTTTTTCCATTTTTCAACGAAACCCATGTTGGGATCAAAGGTTTATAGTCTTTGCTTTGATCTTCCTCTCTCTCACTTGCTCCTTCTCACCTTCCTGTAAGTATATTCCTCTCTCTAATTTTGTACGGTCATGCATATTTGTGTTCTGTTTTGTCTGTGGATTATGAGGGGATAGAAGAAATTTAATACAAAAGCGTAGGTTGAAATGCAGATGGATATGATTCATTGGACCCTTATGCTAACATTACAATCACTTGGGATTTCTTGGTAGAGAATGGGGATACTTATGATGTA

mRNA sequence

CGCCTCCATTGCTGAGATTATCCCATCACAGATTTTATTCAATATCCGCCGGTTTCCCTATTTGAGGGTTTTCAATATCTTGTTTTGGGCATGGAGAACCAGTTTTTTTCCATTTTTCAACGAAACCCATGTTGGGATCAAAGGTTTATAGTCTTTGCTTTGATCTTCCTCTCTCTCACTTGCTCCTTCTCACCTTCCTATGGATATGATTCATTGGACCCTTATGCTAACATTACAATCACTTGGGATTTCTTGGTAGAGAATGGGGATACTTATGATGTA

Coding sequence (CDS)

ATGGAGAACCAGTTTTTTTCCATTTTTCAACGAAACCCATGTTGGGATCAAAGGTTTATAGTCTTTGCTTTGATCTTCCTCTCTCTCACTTGCTCCTTCTCACCTTCCTATGGATATGATTCATTGGACCCTTATGCTAACATTACAATCACTTGGGATTTCTTGGTAGAGAATGGGGATACTTATGATGTA

Protein sequence

MENQFFSIFQRNPCWDQRFIVFALIFLSLTCSFSPSYGYDSLDPYANITITWDFLVENGDTYDV

Homology

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BLAST of CsGy3G019100 vs. NCBI nr
Match: XP_011651285.1 (PREDICTED: COBRA-like protein 6 [Cucumis sativus])

HSP 1 Score: 138.7 bits (348), Expect = 7.1e-30
Identity = 63/64 (98.44%), Postives = 63/64 (98.44%), Query Frame = 0


Query: 1  MENQFFSIFQRNPCWDQRFIVFALIFLSLTCSFSPSYGYDSLDPYANITITWDFLVENGD 60
          MENQFFSIFQRNPCWDQRFIVF LIFLSLTCSFSPSYGYDSLDPYANITITWDFLVENGD
Sbjct: 1  MENQFFSIFQRNPCWDQRFIVFPLIFLSLTCSFSPSYGYDSLDPYANITITWDFLVENGD 60

Query: 61 TYDV 65
          TYDV
Sbjct: 61 TYDV 64

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BLAST of CsGy3G019100 vs. NCBI nr
Match: XP_008456042.2 (PREDICTED: COBRA-like protein 6, partial [Cucumis melo])

HSP 1 Score: 125.9 bits (315), Expect = 4.8e-26
Identity = 58/60 (96.67%), Postives = 59/60 (98.33%), Query Frame = 0


Query: 5  FFSIFQRNPCWDQRFIVFALIFLSLTCSFSPSYGYDSLDPYANITITWDFLVENGDTYDV 64
          FF+IFQRNPC DQRFIVFALIFLSLTCSFSPSYGYDSLDPYANITITWDFLVENGDTYDV
Sbjct: 39 FFTIFQRNPCLDQRFIVFALIFLSLTCSFSPSYGYDSLDPYANITITWDFLVENGDTYDV 98

[Close]

BLAST of CsGy3G019100 vs. NCBI nr
Match: XP_023533604.1 (COBRA-like protein 6 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 110.5 bits (275), Expect = 2.1e-21
Identity = 54/68 (79.41%), Postives = 57/68 (83.82%), Query Frame = 0


Query: 1  MENQFFSIFQRNPC--WDQR--FIVFALIFLSLTCSFSPSYGYDSLDPYANITITWDFLV 60
          MEN FFS+FQ NPC   DQR  FI F LIF SLTCSFSPSY YDSLDPYAN+TITWDFLV
Sbjct: 1  MENPFFSVFQTNPCLFLDQRSNFIAFLLIFFSLTCSFSPSYEYDSLDPYANVTITWDFLV 60

Query: 61 ENGDTYDV 65
          ENGDT+DV
Sbjct: 61 ENGDTFDV 68

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BLAST of CsGy3G019100 vs. NCBI nr
Match: XP_022942251.1 (COBRA-like protein 6 [Cucurbita moschata])

HSP 1 Score: 107.5 bits (267), Expect = 1.8e-20
Identity = 53/68 (77.94%), Postives = 56/68 (82.35%), Query Frame = 0


Query: 1  MENQFFSIFQRNPC--WDQR--FIVFALIFLSLTCSFSPSYGYDSLDPYANITITWDFLV 60
          MEN FFS+FQ NPC   DQR  FI   LIF SLTCSFSPSY YDSLDPYAN+TITWDFLV
Sbjct: 1  MENPFFSVFQTNPCLFLDQRSNFIACLLIFFSLTCSFSPSYEYDSLDPYANVTITWDFLV 60

Query: 61 ENGDTYDV 65
          ENGDT+DV
Sbjct: 61 ENGDTFDV 68

[Close]

BLAST of CsGy3G019100 vs. NCBI nr
Match: XP_022980772.1 (COBRA-like protein 6 [Cucurbita maxima])

HSP 1 Score: 105.5 bits (262), Expect = 6.7e-20
Identity = 52/68 (76.47%), Postives = 56/68 (82.35%), Query Frame = 0


Query: 1  MENQFFSIFQRNPC--WDQR--FIVFALIFLSLTCSFSPSYGYDSLDPYANITITWDFLV 60
          MEN FFS+FQ  PC   DQR  FI F LIF SLTCSFSPSY YDSLDPYAN+TI+WDFLV
Sbjct: 1  MENPFFSVFQTIPCLFLDQRSNFIAFLLIFFSLTCSFSPSYEYDSLDPYANVTISWDFLV 60

Query: 61 ENGDTYDV 65
          ENGDT+DV
Sbjct: 61 ENGDTFDV 68

[Close]

BLAST of CsGy3G019100 vs. TAIR10
Match: AT3G29810.1 (COBRA-like protein 2 precursor)

HSP 1 Score: 42.4 bits (98), Expect = 1.3e-04
Identity = 20/43 (46.51%), Postives = 27/43 (62.79%), Query Frame = 0


Query: 22 FALIFLS--LTCSFSPSYGYDSLDPYANITITWDFLVENGDTY 63
          F L+FL    + +F+ +  YD+LDPY NITI WD +   GD Y
Sbjct: 10 FLLLFLCSWTSFTFTTTEAYDALDPYGNITIKWDIMSWTGDGY 52

[Close]

BLAST of CsGy3G019100 vs. TAIR10
Match: AT3G02210.1 (COBRA-like protein 1 precursor)

HSP 1 Score: 42.0 bits (97), Expect = 1.6e-04
Identity = 18/40 (45.00%), Postives = 23/40 (57.50%), Query Frame = 0


Query: 23 ALIFLSLTCSFSPSYGYDSLDPYANITITWDFLVENGDTY 63
          ++IFL      +PS  YD LDP  NIT+ WD +   GD Y
Sbjct: 18 SIIFLVSFSGLTPSEAYDPLDPSGNITVKWDIITWTGDGY 57

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BLAST of CsGy3G019100 vs. TrEMBL
Match: tr|A0A1S3C1W1|A0A1S3C1W1_CUCME (COBRA-like protein OS=Cucumis melo OX=3656 GN=LOC103496092 PE=3 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 3.2e-26
Identity = 58/60 (96.67%), Postives = 59/60 (98.33%), Query Frame = 0


Query: 5  FFSIFQRNPCWDQRFIVFALIFLSLTCSFSPSYGYDSLDPYANITITWDFLVENGDTYDV 64
          FF+IFQRNPC DQRFIVFALIFLSLTCSFSPSYGYDSLDPYANITITWDFLVENGDTYDV
Sbjct: 39 FFTIFQRNPCLDQRFIVFALIFLSLTCSFSPSYGYDSLDPYANITITWDFLVENGDTYDV 98

[Close]

BLAST of CsGy3G019100 vs. TrEMBL
Match: tr|A0A251RJN2|A0A251RJN2_PRUPE (COBRA-like protein OS=Prunus persica OX=3760 GN=PRUPE_1G575900 PE=3 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.0e-08
Identity = 29/45 (64.44%), Postives = 35/45 (77.78%), Query Frame = 0


Query: 20 IVFALIFLSLTCSFSPSYGYDSLDPYANITITWDFLVENGDTYDV 65
          ++F +   SL  SFS SYGYDSLDPYANITITWDF ++ G TYD+
Sbjct: 16 VLFIIFISSLVTSFSLSYGYDSLDPYANITITWDFRLQTGSTYDI 60

[Close]

BLAST of CsGy3G019100 vs. TrEMBL
Match: tr|A0A2N9ENP1|A0A2N9ENP1_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS4297 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.5e-07
Identity = 31/45 (68.89%), Postives = 32/45 (71.11%), Query Frame = 0


Query: 20 IVFALIFLSLTCSFSPSYGYDSLDPYANITITWDFLVENGDTYDV 65
          IV  LIF  LTCS SPSYGYD LDP A ITITWD + EN  T DV
Sbjct: 3  IVSILIFFFLTCSISPSYGYDPLDPNAKITITWDVVAENDATRDV 47

[Close]

BLAST of CsGy3G019100 vs. TrEMBL
Match: tr|W9RIK2|W9RIK2_9ROSA (COBRA-like protein OS=Morus notabilis OX=981085 GN=L484_006961 PE=3 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.2e-06
Identity = 27/44 (61.36%), Postives = 33/44 (75.00%), Query Frame = 0


Query: 22 FALIFLSLTCSF-SPSYGYDSLDPYANITITWDFLVENGDTYDV 65
          F   F SL  SF SPSYGYD LDP  N+TITWDF+++NG+ YD+
Sbjct: 7  FIFCFFSLISSFPSPSYGYDPLDPNGNMTITWDFILQNGNLYDI 50

[Close]

BLAST of CsGy3G019100 vs. TrEMBL
Match: tr|A0A2K3N130|A0A2K3N130_TRIPR (Cobra-like protein 1-like OS=Trifolium pratense OX=57577 GN=L195_g019945 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 3.6e-06
Identity = 29/46 (63.04%), Postives = 33/46 (71.74%), Query Frame = 0


Query: 19 FIVFALIFLSLTCSFSPSYGYDSLDPYANITITWDFLVENGDTYDV 65
          FIVF +I      S +PSYGYD LDP+ NITITWDFL +N DT DV
Sbjct: 12 FIVFFII-----VSITPSYGYDPLDPFGNITITWDFLSDNEDTIDV 52

The following BLAST results are available for this feature:

BLAST of CsGy3G019100 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011651285.1	7.1e-30	98.44	PREDICTED: COBRA-like protein 6 [Cucumis sativus]	[more]
XP_008456042.2	4.8e-26	96.67	PREDICTED: COBRA-like protein 6, partial [Cucumis melo]	[more]
XP_023533604.1	2.1e-21	79.41	COBRA-like protein 6 [Cucurbita pepo subsp. pepo]	[more]
XP_022942251.1	1.8e-20	77.94	COBRA-like protein 6 [Cucurbita moschata]	[more]
XP_022980772.1	6.7e-20	76.47	COBRA-like protein 6 [Cucurbita maxima]	[more]

BLAST of CsGy3G019100 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G29810.1	1.3e-04	46.51	COBRA-like protein 2 precursor	[more]
AT3G02210.1	1.6e-04	45.00	COBRA-like protein 1 precursor	[more]

BLAST of CsGy3G019100 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy3G019100 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3C1W1\|A0A1S3C1W1_CUCME	3.2e-26	96.67	COBRA-like protein OS=Cucumis melo OX=3656 GN=LOC103496092 PE=3 SV=1	[more]
tr\|A0A251RJN2\|A0A251RJN2_PRUPE	1.0e-08	64.44	COBRA-like protein OS=Prunus persica OX=3760 GN=PRUPE_1G575900 PE=3 SV=1	[more]
tr\|A0A2N9ENP1\|A0A2N9ENP1_FAGSY	1.5e-07	68.89	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS4297 PE=4 SV=1	[more]
tr\|W9RIK2\|W9RIK2_9ROSA	1.2e-06	61.36	COBRA-like protein OS=Morus notabilis OX=981085 GN=L484_006961 PE=3 SV=1	[more]
tr\|A0A2K3N130\|A0A2K3N130_TRIPR	3.6e-06	63.04	Cobra-like protein 1-like OS=Trifolium pratense OX=57577 GN=L195_g019945 PE=4 SV...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0031225	anchored component of membrane

Vocabulary: **Biological Process**
Term	Definition
GO:0010215	cellulose microfibril organization
GO:0016049	cell growth

Vocabulary: **INTERPRO**
Term	Definition
IPR006918	COBRA_pln

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010215	cellulose microfibril organization
biological_process	GO:0016049	cell growth
cellular_component	GO:0031225	anchored component of membrane
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy3G019100.1	CsGy3G019100.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006918	COBRA, plant	PRODOM	PD140986		coord: 24..62 e-value: 4.0E-4 score: 98.0

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy3G019100	Cucurbita maxima (Rimu)	cgybcmaB332
CsGy3G019100	Cucurbita maxima (Rimu)	cgybcmaB410
CsGy3G019100	Cucurbita moschata (Rifu)	cgybcmoB301
CsGy3G019100	Cucurbita moschata (Rifu)	cgybcmoB386
CsGy3G019100	Cucurbita pepo (Zucchini)	cgybcpeB317
CsGy3G019100	Cucurbita pepo (Zucchini)	cgybcpeB362
CsGy3G019100	Cucumber (Chinese Long) v2	cgybcuB109
CsGy3G019100	Bottle gourd (USVL1VR-Ls)	cgyblsiB198
CsGy3G019100	Melon (DHL92) v3.5.1	cgybmeB210
CsGy3G019100	Melon (DHL92) v3.6.1	cgybmedB215
CsGy3G019100	Watermelon (Charleston Gray)	cgybwcgB214
CsGy3G019100	Watermelon (97103) v1	cgybwmB229
CsGy3G019100	Wild cucumber (PI 183967)	cgybcpiB110
CsGy3G019100	Silver-seed gourd	carcgybB0043
CsGy3G019100	Silver-seed gourd	carcgybB0650
CsGy3G019100	Cucumber (Chinese Long) v3	cgybcucB117
CsGy3G019100	Watermelon (97103) v2	cgybwmbB206
CsGy3G019100	Wax gourd	cgybwgoB271