CsGy3G019080 (gene) Cucumber (Gy14) v2

Overview
NameCsGy3G019080
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
DescriptionUnknown Protein
LocationChr3 : 15302053 .. 15303063 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATAGTGAACGGGTATGAAAAAGGCTTATCATCTCAACTAATATTCTCATCATCAGAACCATATGACAAATAAAACTCAAAACTATGCTATACTACTTGTAACTTGTGGTATTGAACTGCCATCTCCTAAATTCCACTGTCATAATGATAGAGAAAGAAACAAGAAGAAGAAAACTACCAATGGGGCTGTCATGCTCCTGTGTGCTTTATTTGGGAGCCTTGGATATTGGTCTGGAGGTGGCATTACACATTCATCCCCATTGAACATAATTCTTCTTGGAAATGCCCATCCTTCTCTGAAAGTGAAAATTTCTGAATCTTTTTGGAGAAGAATTTCTGTTTGGACATTCCCTCTCTCTCCTGATGTGAGTAATAAGTCATTGTAGAAGTGTATCCCCCAAAACATCCCTGTGTCATCTTCAGAAGCACAACAGCAGTTTATACTCAGAATGTTTCTGGAAACTTTTAAACATGCTATGAATTCTGATAAAAAAAGAGAAATGTGAGAGATAAGATCCAATGGACAGTGGTGAAACTTACTGATGTTACCATACTGATTGAGGGGGCTGTAGTTGAAGCTGAAAACTTGAGTAATATTCCGCAAATTGGGATGGATTACAACTAAGTTCCAATCAGAGTAATTCTTAGCAAAATTTAGATTTGTGATTGTTATCTTTACCCTCCAATACTGTGTATAACTCTGTTTCACATGCCAATGCACCCTTATTGGGCACATGTGCTGTGAACACCTCACCAATGCTTCTACTTCAGCAGTGTTGTGTTCATGTGGAAGTTGCAACACTGAAGGAGCTTCACCTGACCTGTAAAATATTTTTGGACAGTGGAAGATATTATTAGTCACACAAAGAAATACCTCTTATTCCAAGACTAAAAAATGGCTGGGGAGGCAAAGTGTGGCATATTACTTGACACATTTTGTTCCCTTTAGCCCTTGGCAACCACAGCTGCACTGAGGGCAAGGGACAATGGTGCTGTTGTAGAAGGATGA

mRNA sequence

ATGATAGTGAACGGAGAAAGAAACAAGAAGAAGAAAACTACCAATGGGGCTGTCATGCTCCTGTGTGCTTTATTTGGGAGCCTTGGATATTGGTCTGGAGGTGGCATTACACATTCATCCCCATTGAACATAATTCTTCTTGGAAATGCCCATCCTTCTCTGAAAGTGAAAATTTCTGAATCTTTTTGGAGAAGAATTTCTGTTTGGACATTCCCTCTCTCTCCTGATCCCTTGGCAACCACAGCTGCACTGAGGGCAAGGGACAATGGTGCTGTTGTAGAAGGATGA

Coding sequence (CDS)

ATGATAGTGAACGGAGAAAGAAACAAGAAGAAGAAAACTACCAATGGGGCTGTCATGCTCCTGTGTGCTTTATTTGGGAGCCTTGGATATTGGTCTGGAGGTGGCATTACACATTCATCCCCATTGAACATAATTCTTCTTGGAAATGCCCATCCTTCTCTGAAAGTGAAAATTTCTGAATCTTTTTGGAGAAGAATTTCTGTTTGGACATTCCCTCTCTCTCCTGATCCCTTGGCAACCACAGCTGCACTGAGGGCAAGGGACAATGGTGCTGTTGTAGAAGGATGA

Protein sequence

MIVNGERNKKKKTTNGAVMLLCALFGSLGYWSGGGITHSSPLNIILLGNAHPSLKVKISESFWRRISVWTFPLSPDPLATTAALRARDNGAVVEG
Homology
[Close]
BLAST of CsGy3G019080 vs. NCBI nr
Match: OAY81291.1 (COBRA-like protein 4 [Ananas comosus])

HSP 1 Score: 55.1 bits (131), Expect = 1.5e-04
Identity = 28/53 (52.83%), Postives = 32/53 (60.38%), Query Frame = 0 

Query: 23  ALFGSLGYWSGGGITHSSPLNIILLGNAHPSLKVKISESFWRRISVWTFPLSP 76
           A+FGS GY SGGG+T  SPL    LG A P  KV + +SF  R S  TFP  P
Sbjct: 382 AVFGSHGYESGGGMTQLSPLKYTRLGKAQPFWKVNVEKSFRNRSSDCTFPYGP 434

[Close]
BLAST of CsGy3G019080 vs. TrEMBL
Match: tr|A0A0E0P1G6|A0A0E0P1G6_ORYRU (Uncharacterized protein OS=Oryza rufipogon OX=4529 PE=3 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 1.0e-04
Identity = 33/74 (44.59%), Postives = 39/74 (52.70%), Query Frame = 0 

Query: 2   IVNGERNKKKKTTNGAVMLLCALFGSLGYWSGGGITHSSPLNIILLGNAHPSLKVKISES 61
           + N  +N K  + NG  +   AL G+ GY SGGG+T  SPL     G AHP  KVK  ES
Sbjct: 199 VANTIQNAKSGSVNGCFVRGLAL-GNHGYASGGGMTQLSPLKYTRWGKAHPLSKVKAIES 258

Query: 62  FWRRISVWTFPLSP 76
           F R  S   FP  P
Sbjct: 259 FRRSSSDCAFPSGP 271

[Close]
BLAST of CsGy3G019080 vs. TrEMBL
Match: tr|A0A0E0P1G7|A0A0E0P1G7_ORYRU (Uncharacterized protein OS=Oryza rufipogon OX=4529 PE=3 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 1.0e-04
Identity = 33/74 (44.59%), Postives = 39/74 (52.70%), Query Frame = 0 

Query: 2   IVNGERNKKKKTTNGAVMLLCALFGSLGYWSGGGITHSSPLNIILLGNAHPSLKVKISES 61
           + N  +N K  + NG  +   AL G+ GY SGGG+T  SPL     G AHP  KVK  ES
Sbjct: 135 VANTIQNAKSGSVNGCFVRGLAL-GNHGYASGGGMTQLSPLKYTRWGKAHPLSKVKAIES 194

Query: 62  FWRRISVWTFPLSP 76
           F R  S   FP  P
Sbjct: 195 FRRSSSDCAFPSGP 207

[Close]
BLAST of CsGy3G019080 vs. TrEMBL
Match: tr|A0A199VWH6|A0A199VWH6_ANACO (COBRA-like protein OS=Ananas comosus OX=4615 GN=ACMD2_10839 PE=3 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 1.0e-04
Identity = 28/53 (52.83%), Postives = 32/53 (60.38%), Query Frame = 0 

Query: 23  ALFGSLGYWSGGGITHSSPLNIILLGNAHPSLKVKISESFWRRISVWTFPLSP 76
           A+FGS GY SGGG+T  SPL    LG A P  KV + +SF  R S  TFP  P
Sbjct: 382 AVFGSHGYESGGGMTQLSPLKYTRLGKAQPFWKVNVEKSFRNRSSDCTFPYGP 434

[Close]
BLAST of CsGy3G019080 vs. TrEMBL
Match: tr|A0A199W953|A0A199W953_ANACO (Uncharacterized protein OS=Ananas comosus OX=4615 GN=ACMD2_19069 PE=4 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 8.6e-04
Identity = 25/44 (56.82%), Postives = 30/44 (68.18%), Query Frame = 0 

Query: 26 GSLGYWSGGGITHSSPLNIILLGNAHPSLKVKISESFWRRISVW 70
          G +GY SGGG+THS PL  ILLG AHP L V  + SF   IS++
Sbjct: 37 GRIGYVSGGGMTHSWPLKYILLGKAHPPLNVNSAGSFCSSISLF 80

The following BLAST results are available for this feature:
BLAST of CsGy3G019080 vs. NCBI nr
Match NameE-valueIdentityDescription
OAY81291.11.5e-0452.83COBRA-like protein 4 [Ananas comosus][more]
BLAST of CsGy3G019080 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsGy3G019080 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsGy3G019080 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0E0P1G6|A0A0E0P1G6_ORYRU1.0e-0444.59Uncharacterized protein OS=Oryza rufipogon OX=4529 PE=3 SV=1[more]
tr|A0A0E0P1G7|A0A0E0P1G7_ORYRU1.0e-0444.59Uncharacterized protein OS=Oryza rufipogon OX=4529 PE=3 SV=1[more]
tr|A0A199VWH6|A0A199VWH6_ANACO1.0e-0452.83COBRA-like protein OS=Ananas comosus OX=4615 GN=ACMD2_10839 PE=3 SV=1[more]
tr|A0A199W953|A0A199W953_ANACO8.6e-0456.82Uncharacterized protein OS=Ananas comosus OX=4615 GN=ACMD2_19069 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy3G019080.1CsGy3G019080.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsGy3G019080CmaCh04G005430Cucurbita maxima (Rimu)cgybcmaB410
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsGy3G019080Cucurbita maxima (Rimu)cgybcmaB332
CsGy3G019080Cucurbita moschata (Rifu)cgybcmoB301
CsGy3G019080Cucurbita moschata (Rifu)cgybcmoB386
CsGy3G019080Cucurbita pepo (Zucchini)cgybcpeB317
CsGy3G019080Cucurbita pepo (Zucchini)cgybcpeB362
CsGy3G019080Cucumber (Chinese Long) v2cgybcuB109
CsGy3G019080Bottle gourd (USVL1VR-Ls)cgyblsiB198
CsGy3G019080Melon (DHL92) v3.5.1cgybmeB210
CsGy3G019080Melon (DHL92) v3.6.1cgybmedB215
CsGy3G019080Watermelon (Charleston Gray)cgybwcgB214
CsGy3G019080Watermelon (97103) v1cgybwmB229
CsGy3G019080Wild cucumber (PI 183967)cgybcpiB110
CsGy3G019080Silver-seed gourdcarcgybB0043
CsGy3G019080Silver-seed gourdcarcgybB0650
CsGy3G019080Cucumber (Chinese Long) v3cgybcucB117
CsGy3G019080Watermelon (97103) v2cgybwmbB206
CsGy3G019080Wax gourdcgybwgoB271