CsGy3G019050 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy3G019050
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Uncharacterized protein
Location	Chr3 : 15289423 .. 15291288 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACTATCCCTCTCCTTCTTCTATCCAGCCTGATCCCCAGACGACGTGTGATTGCAGCCAATATGTATGTCACATGGAAGGTGGATTAGATCAGATGGAGGACTCCTCACAACAAATAGAGTCATATGTGTCAGCTGAGTTGTTGTCCATTTTAGCCAAGTTATAGACCCTAAAAAAGCTTCTGATGCCATTGGTTAAGGTACTATTGTCAATTACTTGGAACACTTTATTATTTTGCCTTAGTTAAGTATTAGTTGTCACTTATGCAAGGCTACTGCTTCTTTAATAGGATAAGGCATTGACTCCCAACCATGCTACGACGGTGGTAAAGGTACGTCGTTCAATGCACCAGAGTCTTAGACTTTTGTTGGCGATTCATTTGTGGATGTTCCTGCTCTGGAAATTGATGACCAGCTTGCTGACGAGGAGAAGGGGACATCCATCAGTGGCGACCTCGAGGATGGTATCATACCCATCTACATACCATCAGGGGGCGAGGATGTGCCAGTACTGCTTCCTCAACCCATGCTAAAGTCGAAGGATGAGGTAAATGGTTTCAAACTCTGCATTCCTTTATATGGTTAGTTTAGTAATAATAAAACTAACTAATAAACTGAATTATGAATTGTACAGCCCATTGAGTTTGACATGAAGGTCATCTTGCCTTTGGTTTTTTCAAATGTCGTACCTAAGGAAAAGACGACAAGGAAGAGAGGTATACCGTGAAAATTGCATTCCTTAATTTTCGAACAAGGACAAGGGGCTAAGAGAAGAAAAATGGGTGCGCCCCTACAAATTATAATTACCATATGCAAGATCCCTGTGAAGTTCAATAAGTAATTCTTGGCATACCTCGTGGACCCTCGAAGAGCTACGAAGTTGCGAAAGATAGTTAGATTCTCAAGGGTGCTGCTGTGGTTTATGAACCTCCTAACCCTGCATACATTCACAGACGACAACGTATGTACTTCAAATTTGGTATGTTTTTCATTACGTATTTCATCATCTGATACTAATTAGTTGTTTCTCACCATTTGCAGACAATTGAAACATTGTTCTTGTTCACCTATAAGAAGTTACAGGTTAATTCGATCCCTCACACGTCAAGAAATGATTCACTACGGCTGGCCATGCCATCACGGTATGTTTAAACAACTTTCGGTTCAATTATTATTCTTAACTTGTTAATAATTTGTGTTTTGGTTCACCCAACGTTTTAGAATTTTCTAAGGCGTAACTCAGGTCTGTACGAGGAGATTAAAAGGGACACTCGCCTGGTTGACGTTCAGTACACTTGGGTTACAGACGCTATCGTATTGAAATACGTGATGGGCGAGTTATCGGATTATGACAAGGCATGAATGGATATGGACTTCATATACATGCCTTACAACATCAGGGGATGCCATTGGTTTTTGATCGTGCTTGGCATGATCAAGAGACAAATCAACGTTTGGGATTCATTTATTGATTTGACGTTAGATGCGAACCTTGATAACAAACTCGACAACATGAGGTGCGTTGTCCCCACTCTGATGTAGCACGTTGATGTGTTCATAGTGAAGCCGAATTTACCTTCGACATCATGGAAGGTATATCGTGTGATTGATGCACCCCAACAAATGACAACGAGTGATTTTGAGATTTGTTATTGTAAATTTTTTTAACACGATGTAACCACTTCTTCTTTAAAACCCTAAACTAAAAAATATCCCTCTATTTCATCAACAATTGACCTTTTTTTATTGATGCCTATCTATGCTTAGAGAAATTGTAATACGATTCACAAATTACTTTTATATATTGAAATCGTGTGAGCTGGATGATTTAGAAATTGACTTCGTTTAGGTTAAAGAACTTCTAG

mRNA sequence

ATGGACTATCCCTCTCCTTCTTCTATCCAGCCTGATCCCCAGACGACGTGTGATTGCAGCCAATATGATAAGGCATTGACTCCCAACCATGCTACGACGGTGGTAAAGCTTGCTGACGAGGAGAAGGGGACATCCATCAGTGGCGACCTCGAGGATGGTATCATACCCATCTACATACCATCAGGGGGCGAGGATGTGCCAGTACTGCTTCCTCAACCCATGCTAAAGTCGAAGGATGAGCCCATTGAGTTTGACATGAAGGTCATCTTGCCTTTGGTTTTTTCAAATGTCGTACCTAAGGAAAAGACGACAAGGAAGAGAGACGACAACACAATTGAAACATTGTTCTTGTTCACCTATAAGAAGTTACAGGTTAATTCGATCCCTCACACGTCAAGAAATGATTCACTACGGCTGGCCATGCCATCACGGGGATGCCATTGGTTTTTGATCGTGCTTGGCATGATCAAGAGACAAATCAACGTTTGGGATTCATTTATTGATTTGACGTTAGATGCGAACCTTGATAACAAACTCGACAACATGAGGTGCGTTGTCCCCACTCTGATGTTAAAGAACTTCTAG

Coding sequence (CDS)

ATGGACTATCCCTCTCCTTCTTCTATCCAGCCTGATCCCCAGACGACGTGTGATTGCAGCCAATATGATAAGGCATTGACTCCCAACCATGCTACGACGGTGGTAAAGCTTGCTGACGAGGAGAAGGGGACATCCATCAGTGGCGACCTCGAGGATGGTATCATACCCATCTACATACCATCAGGGGGCGAGGATGTGCCAGTACTGCTTCCTCAACCCATGCTAAAGTCGAAGGATGAGCCCATTGAGTTTGACATGAAGGTCATCTTGCCTTTGGTTTTTTCAAATGTCGTACCTAAGGAAAAGACGACAAGGAAGAGAGACGACAACACAATTGAAACATTGTTCTTGTTCACCTATAAGAAGTTACAGGTTAATTCGATCCCTCACACGTCAAGAAATGATTCACTACGGCTGGCCATGCCATCACGGGGATGCCATTGGTTTTTGATCGTGCTTGGCATGATCAAGAGACAAATCAACGTTTGGGATTCATTTATTGATTTGACGTTAGATGCGAACCTTGATAACAAACTCGACAACATGAGGTGCGTTGTCCCCACTCTGATGTTAAAGAACTTCTAG

Protein sequence

MDYPSPSSIQPDPQTTCDCSQYDKALTPNHATTVVKLADEEKGTSISGDLEDGIIPIYIPSGGEDVPVLLPQPMLKSKDEPIEFDMKVILPLVFSNVVPKEKTTRKRDDNTIETLFLFTYKKLQVNSIPHTSRNDSLRLAMPSRGCHWFLIVLGMIKRQINVWDSFIDLTLDANLDNKLDNMRCVVPTLMLKNF

Homology

[Close]

BLAST of CsGy3G019050 vs. NCBI nr
Match: KGN57968.1 (hypothetical protein Csa_3G415130 [Cucumis sativus])

HSP 1 Score: 82.4 bits (202), Expect = 1.8e-12
Identity = 43/69 (62.32%), Postives = 54/69 (78.26%), Query Frame = 0


Query: 39  DEEKGTSISGDLEDGIIPIYIPSGGEDVPVLLPQPMLKSKDEPIEFDMKVILPLVFSNVV 98
           D+E GTS+S + + GII I +PS GEDV  L PQPML+ KDE IEFD++VI PLVF +V+
Sbjct: 35  DKETGTSVSDNPKYGIISIDVPSRGEDVRPLPPQPMLEPKDESIEFDVEVISPLVFPDVI 94

Query: 99  PKEKTTRKR 108
            KE+TTRKR
Sbjct: 95  LKERTTRKR 103

[Close]

BLAST of CsGy3G019050 vs. NCBI nr
Match: KGN49555.1 (hypothetical protein Csa_5G001020 [Cucumis sativus])

HSP 1 Score: 60.8 bits (146), Expect = 5.7e-06
Identity = 38/76 (50.00%), Postives = 47/76 (61.84%), Query Frame = 0


Query: 36  KLADEEKGTSISGDLEDGIIPIYIPSGGEDVPVLLP-----QPMLKSKDEPIEFDMKVIL 95
           KL DEE  TS+S + +DGIIPI +PS GED+P L P        L+SKDE          
Sbjct: 243 KLVDEETRTSVSDNPKDGIIPIDVPSKGEDMPPLPPXXXXXXXXLESKDE---------- 302

Query: 96  PLVFSNVVPKEKTTRK 107
           PLVFS+VVPK+  T+K
Sbjct: 303 PLVFSDVVPKKGITKK 308

[Close]

BLAST of CsGy3G019050 vs. TrEMBL
Match: tr|A0A0A0L860|A0A0A0L860_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G415130 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 1.2e-12
Identity = 43/69 (62.32%), Postives = 54/69 (78.26%), Query Frame = 0


Query: 39  DEEKGTSISGDLEDGIIPIYIPSGGEDVPVLLPQPMLKSKDEPIEFDMKVILPLVFSNVV 98
           D+E GTS+S + + GII I +PS GEDV  L PQPML+ KDE IEFD++VI PLVF +V+
Sbjct: 35  DKETGTSVSDNPKYGIISIDVPSRGEDVRPLPPQPMLEPKDESIEFDVEVISPLVFPDVI 94

Query: 99  PKEKTTRKR 108
            KE+TTRKR
Sbjct: 95  LKERTTRKR 103

[Close]

BLAST of CsGy3G019050 vs. TrEMBL
Match: tr|A0A0A0KIM1|A0A0A0KIM1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G001020 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 3.8e-06
Identity = 38/76 (50.00%), Postives = 47/76 (61.84%), Query Frame = 0


Query: 36  KLADEEKGTSISGDLEDGIIPIYIPSGGEDVPVLLP-----QPMLKSKDEPIEFDMKVIL 95
           KL DEE  TS+S + +DGIIPI +PS GED+P L P        L+SKDE          
Sbjct: 243 KLVDEETRTSVSDNPKDGIIPIDVPSKGEDMPPLPPXXXXXXXXLESKDE---------- 302

Query: 96  PLVFSNVVPKEKTTRK 107
           PLVFS+VVPK+  T+K
Sbjct: 303 PLVFSDVVPKKGITKK 308

The following BLAST results are available for this feature:

BLAST of CsGy3G019050 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN57968.1	1.8e-12	62.32	hypothetical protein Csa_3G415130 [Cucumis sativus]	[more]
KGN49555.1	5.7e-06	50.00	hypothetical protein Csa_5G001020 [Cucumis sativus]	[more]

BLAST of CsGy3G019050 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsGy3G019050 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy3G019050 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L860\|A0A0A0L860_CUCSA	1.2e-12	62.32	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G415130 PE=4 SV=1	[more]
tr\|A0A0A0KIM1\|A0A0A0KIM1_CUCSA	3.8e-06	50.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G001020 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy3G019050.1	CsGy3G019050.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy3G019050	CSPI03G19150	Wild cucumber (PI 183967)	cgybcpiB110

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy3G019050	Cucurbita maxima (Rimu)	cgybcmaB332
CsGy3G019050	Cucurbita maxima (Rimu)	cgybcmaB410
CsGy3G019050	Cucurbita moschata (Rifu)	cgybcmoB301
CsGy3G019050	Cucurbita moschata (Rifu)	cgybcmoB386
CsGy3G019050	Cucurbita pepo (Zucchini)	cgybcpeB317
CsGy3G019050	Cucurbita pepo (Zucchini)	cgybcpeB362
CsGy3G019050	Cucumber (Chinese Long) v2	cgybcuB109
CsGy3G019050	Bottle gourd (USVL1VR-Ls)	cgyblsiB198
CsGy3G019050	Melon (DHL92) v3.5.1	cgybmeB210
CsGy3G019050	Melon (DHL92) v3.6.1	cgybmedB215
CsGy3G019050	Watermelon (Charleston Gray)	cgybwcgB214
CsGy3G019050	Watermelon (97103) v1	cgybwmB229
CsGy3G019050	Silver-seed gourd	carcgybB0043
CsGy3G019050	Silver-seed gourd	carcgybB0650
CsGy3G019050	Cucumber (Chinese Long) v3	cgybcucB117
CsGy3G019050	Watermelon (97103) v2	cgybwmbB206
CsGy3G019050	Wax gourd	cgybwgoB271