CsGy3G016700 (gene) Cucumber (Gy14) v2

NameCsGy3G016700
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
Descriptiontwo-component response regulator ARR14-like
LocationChr3 : 12398837 .. 12399626 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGAATGAAAATCCTAAGTGTTCAAGTGATGGAACGGGAATGACGGTGACCGGAAAGGATCAAATGATTTTCTTAGGTCAAGATAATGAGGCATTTGTTGAGAATTTCCAAGGTAAGCAAAAAAATTTACCAGTGGTTTCTAACAAAAATATGGAGAGTGGTTCTTTTTTAGTGTCATCAAAAGAAGAAGGGAAAGCAGCAGCTGATCACACCATTGCATTTGAAGATATTGGTGGTGAAAATTACCAAAATTGTTTTGATGTTCTTAGTGAGATCTTCATGGGGCACAACCACAATCAAGCTCCTTTAAGGGTAAACGTTTGGTAATTTACGTTATGTTACCATGCATATAAATTTATTAAATAATGAACATTGAAGATCAATGTAGAGAAATTAAGATTAACAATAGTAATTATATGTTTGTTTAGAAGGAAGAAATGGATGTGTCTGATATTTGGAATGGGATTGAAATGAATGCTTCAACAAAGCAAGTTCATGCTAGACCTTCAAGCATCCCTACTCAGGCAATGCATACAATCTTTTCATTTTTAATTTTGGTATTAGTTATCAATAATACATTACTAATTATTCTTTCATTATGTTTCAAAAACATATAACTTTTTTTTTTTAATTTGATAAGATAATACTAAGACCTCATCTGCTAGGGTAAATTAAAGGAACAACAATATTTGATTTAATGCAAATCTAATTAATTGACATACGGTTGTTGTCTTGGCAGGGTTGGGAGGATGACGATATTTTAGAAATGCTTTTTGGAGATGGTTGA

mRNA sequence

ATGGAGAATGAAAATCCTAAGTGTTCAAGTGATGGAACGGGAATGACGGTGACCGGAAAGGATCAAATGATTTTCTTAGGTCAAGATAATGAGGCATTTGTTGAGAATTTCCAAGTGTCATCAAAAGAAGAAGGGAAAGCAGCAGCTGATCACACCATTGCATTTGAAGATATTGGTGGTGAAAATTACCAAAATTGTTTTGATGTTCTTAGTGAGATCTTCATGGGGCACAACCACAATCAAGCTCCTTTAAGGAAGGAAGAAATGGATGTGTCTGATATTTGGAATGGGATTGAAATGAATGCTTCAACAAAGCAAGGTTGGGAGGATGACGATATTTTAGAAATGCTTTTTGGAGATGGTTGA

Coding sequence (CDS)

ATGGAGAATGAAAATCCTAAGTGTTCAAGTGATGGAACGGGAATGACGGTGACCGGAAAGGATCAAATGATTTTCTTAGGTCAAGATAATGAGGCATTTGTTGAGAATTTCCAAGTGTCATCAAAAGAAGAAGGGAAAGCAGCAGCTGATCACACCATTGCATTTGAAGATATTGGTGGTGAAAATTACCAAAATTGTTTTGATGTTCTTAGTGAGATCTTCATGGGGCACAACCACAATCAAGCTCCTTTAAGGAAGGAAGAAATGGATGTGTCTGATATTTGGAATGGGATTGAAATGAATGCTTCAACAAAGCAAGGTTGGGAGGATGACGATATTTTAGAAATGCTTTTTGGAGATGGTTGA

Protein sequence

MENENPKCSSDGTGMTVTGKDQMIFLGQDNEAFVENFQVSSKEEGKAAADHTIAFEDIGGENYQNCFDVLSEIFMGHNHNQAPLRKEEMDVSDIWNGIEMNASTKQGWEDDDILEMLFGDG
BLAST of CsGy3G016700 vs. NCBI nr
Match: KGN57341.1 (hypothetical protein Csa_3G180290 [Cucumis sativus])

HSP 1 Score: 228.0 bits (580), Expect = 1.7e-56
Identity = 120/163 (73.62%), Postives = 120/163 (73.62%), Query Frame = 0

Query: 1   MENENPKCSSDGTGMTVTGKDQMIFLGQDNEAFVENFQ--------------------VS 60
           MENENPKCSSDGTGMTVTGKDQMIF GQDNEAFVENFQ                    VS
Sbjct: 315 MENENPKCSSDGTGMTVTGKDQMIFFGQDNEAFVENFQGKQKNLPVVSNKNMESGSFLVS 374

Query: 61  SKEEGKAAADHTIAFEDIGGENYQNCFDVLSEIFMGHNHNQAPLRKEEMDVSDIWNGIEM 120
           SKEEGKAAADHTIAFEDIGGENYQNCFDVLSEIFMGHNHNQAPLRKEEMDVSDIWNGIEM
Sbjct: 375 SKEEGKAAADHTIAFEDIGGENYQNCFDVLSEIFMGHNHNQAPLRKEEMDVSDIWNGIEM 434

Query: 121 NASTKQ----------------------GWEDDDILEMLFGDG 122
           NASTKQ                      GWEDDDILEMLFGDG
Sbjct: 435 NASTKQVHARPSSLPTQAMHTIFSFLILGWEDDDILEMLFGDG 477

BLAST of CsGy3G016700 vs. NCBI nr
Match: XP_008439164.1 (PREDICTED: two-component response regulator ARR14-like [Cucumis melo])

HSP 1 Score: 181.4 bits (459), Expect = 1.8e-42
Identity = 101/154 (65.58%), Postives = 109/154 (70.78%), Query Frame = 0

Query: 1   MENENPKCSSDGTGMTVTGKDQMIFLGQDNEAFVENFQ---------------------V 60
           MENENPKCSSDG  +T TG++QMIFLGQDN AF ENF+                     V
Sbjct: 355 MENENPKCSSDGM-LTKTGENQMIFLGQDNGAFAENFEGKQKKLPVVSNKNMDESGSFLV 414

Query: 61  SSKEEGKAAADHTIAFEDIGGENYQNCFDVLSEIFMGHNHNQAPLRKEEMDVSDIWNGIE 120
           SSKEEGKAAA+ TIAFEDIG +NYQNCFDVLSEIFM HN NQ  LRKEEMDVSDIWNGIE
Sbjct: 415 SSKEEGKAAANDTIAFEDIGDDNYQNCFDVLSEIFMEHNQNQTSLRKEEMDVSDIWNGIE 474

Query: 121 MNASTK------------QGWEDDDILEMLFGDG 122
           M+ASTK            QGWE D+ILEMLFGDG
Sbjct: 475 MDASTKQDHVIQPSSLPTQGWE-DEILEMLFGDG 506

BLAST of CsGy3G016700 vs. NCBI nr
Match: XP_022985105.1 (two-component response regulator ARR14-like [Cucurbita maxima])

HSP 1 Score: 87.4 bits (215), Expect = 3.6e-14
Identity = 55/96 (57.29%), Postives = 63/96 (65.62%), Query Frame = 0

Query: 39  VSSKEEGKAAADHTIAFEDIGGENYQNCFDVLSEIFMGHN-HNQAPLRKEE---MDVSDI 98
           VSSKE      + TIAFED  GE +QNCFDVLSEIFMGHN HNQ  LR+EE   M++S +
Sbjct: 421 VSSKE-----GNDTIAFEDKIGE-HQNCFDVLSEIFMGHNHHNQTSLRREEMGDMELSHV 480

Query: 99  WNGIEMNASTK----------QGWEDDDILEMLFGD 121
           WNGIEM AS+K          QGW DDD+L    GD
Sbjct: 481 WNGIEMEASSKQDLQPSSFSAQGW-DDDMLRTFLGD 509

BLAST of CsGy3G016700 vs. NCBI nr
Match: XP_022922549.1 (two-component response regulator ARR14-like [Cucurbita moschata])

HSP 1 Score: 84.0 bits (206), Expect = 3.9e-13
Identity = 54/96 (56.25%), Postives = 62/96 (64.58%), Query Frame = 0

Query: 39  VSSKEEGKAAADHTIAFEDIGGENYQNCFDVLSEIFMGHN-HNQAPLRKEE---MDVSDI 98
           VSSKE      + TIAF D  GE +QNCFDVLSEIFMGHN HNQ  LR+EE   M++S +
Sbjct: 418 VSSKE-----GNDTIAFGDQIGE-HQNCFDVLSEIFMGHNHHNQTSLRREEMVDMELSHM 477

Query: 99  WNGIEMNASTK----------QGWEDDDILEMLFGD 121
           WNGIEM AS+K          QGW DDD+L    GD
Sbjct: 478 WNGIEMEASSKQDLQPSTLSAQGW-DDDMLRTFLGD 506

BLAST of CsGy3G016700 vs. NCBI nr
Match: XP_023522014.1 (two-component response regulator ARR14-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 80.9 bits (198), Expect = 3.3e-12
Identity = 62/149 (41.61%), Postives = 79/149 (53.02%), Query Frame = 0

Query: 1   MENENPKCSSDGTGMTVTGKDQMIFLGQD--NEAFVENFQVSS--------KEEG----- 60
           +ENENP   + G  +   G    +    D  N  F  NF+ ++        +E G     
Sbjct: 357 IENENP---NGGLRLNDNGVANHVQATHDHNNGGFCGNFEGTNQVLENKNVEENGVVLVS 416

Query: 61  KAAADHTIAFEDIGGENYQNCFDVLSEIFMGHN-HNQAPLRKEE---MDVSDIWNGIEMN 120
               + TIAF D  GE +QNCFDVLSEIFMGHN HNQ  LR++E   M++S +WNGIEM 
Sbjct: 417 PKEGNDTIAFGDQIGE-HQNCFDVLSEIFMGHNHHNQTSLRRDEMGDMELSHMWNGIEME 476

BLAST of CsGy3G016700 vs. TrEMBL
Match: tr|A0A0A0LBA4|A0A0A0LBA4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G180290 PE=4 SV=1)

HSP 1 Score: 228.0 bits (580), Expect = 1.1e-56
Identity = 120/163 (73.62%), Postives = 120/163 (73.62%), Query Frame = 0

Query: 1   MENENPKCSSDGTGMTVTGKDQMIFLGQDNEAFVENFQ--------------------VS 60
           MENENPKCSSDGTGMTVTGKDQMIF GQDNEAFVENFQ                    VS
Sbjct: 315 MENENPKCSSDGTGMTVTGKDQMIFFGQDNEAFVENFQGKQKNLPVVSNKNMESGSFLVS 374

Query: 61  SKEEGKAAADHTIAFEDIGGENYQNCFDVLSEIFMGHNHNQAPLRKEEMDVSDIWNGIEM 120
           SKEEGKAAADHTIAFEDIGGENYQNCFDVLSEIFMGHNHNQAPLRKEEMDVSDIWNGIEM
Sbjct: 375 SKEEGKAAADHTIAFEDIGGENYQNCFDVLSEIFMGHNHNQAPLRKEEMDVSDIWNGIEM 434

Query: 121 NASTKQ----------------------GWEDDDILEMLFGDG 122
           NASTKQ                      GWEDDDILEMLFGDG
Sbjct: 435 NASTKQVHARPSSLPTQAMHTIFSFLILGWEDDDILEMLFGDG 477

BLAST of CsGy3G016700 vs. TrEMBL
Match: tr|A0A1S3AYS8|A0A1S3AYS8_CUCME (two-component response regulator ARR14-like OS=Cucumis melo OX=3656 GN=LOC103484043 PE=4 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 1.2e-42
Identity = 101/154 (65.58%), Postives = 109/154 (70.78%), Query Frame = 0

Query: 1   MENENPKCSSDGTGMTVTGKDQMIFLGQDNEAFVENFQ---------------------V 60
           MENENPKCSSDG  +T TG++QMIFLGQDN AF ENF+                     V
Sbjct: 355 MENENPKCSSDGM-LTKTGENQMIFLGQDNGAFAENFEGKQKKLPVVSNKNMDESGSFLV 414

Query: 61  SSKEEGKAAADHTIAFEDIGGENYQNCFDVLSEIFMGHNHNQAPLRKEEMDVSDIWNGIE 120
           SSKEEGKAAA+ TIAFEDIG +NYQNCFDVLSEIFM HN NQ  LRKEEMDVSDIWNGIE
Sbjct: 415 SSKEEGKAAANDTIAFEDIGDDNYQNCFDVLSEIFMEHNQNQTSLRKEEMDVSDIWNGIE 474

Query: 121 MNASTK------------QGWEDDDILEMLFGDG 122
           M+ASTK            QGWE D+ILEMLFGDG
Sbjct: 475 MDASTKQDHVIQPSSLPTQGWE-DEILEMLFGDG 506

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN57341.11.7e-5673.62hypothetical protein Csa_3G180290 [Cucumis sativus][more]
XP_008439164.11.8e-4265.58PREDICTED: two-component response regulator ARR14-like [Cucumis melo][more]
XP_022985105.13.6e-1457.29two-component response regulator ARR14-like [Cucurbita maxima][more]
XP_022922549.13.9e-1356.25two-component response regulator ARR14-like [Cucurbita moschata][more]
XP_023522014.13.3e-1241.61two-component response regulator ARR14-like [Cucurbita pepo subsp. pepo][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A0A0LBA4|A0A0A0LBA4_CUCSA1.1e-5673.62Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G180290 PE=4 SV=1[more]
tr|A0A1S3AYS8|A0A1S3AYS8_CUCME1.2e-4265.58two-component response regulator ARR14-like OS=Cucumis melo OX=3656 GN=LOC103484... [more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000160 phosphorelay signal transduction system
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005634 nucleus
cellular_component GO:0005575 cellular_component
molecular_function GO:0003677 DNA binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy3G016700.1CsGy3G016700.1mRNA


The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsGy3G016700Csa3G180290Cucumber (Chinese Long) v2cgybcuB109
CsGy3G016700CSPI03G16580Wild cucumber (PI 183967)cgybcpiB110
CsGy3G016700MELO3C006873.2Melon (DHL92) v3.6.1cgybmedB201
CsGy3G016700Carg16702Silver-seed gourdcarcgybB0859
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsGy3G016700Cucumber (Gy14) v2cgybcgybB087
CsGy3G016700Cucumber (Gy14) v2cgybcgybB091
CsGy3G016700Cucurbita maxima (Rimu)cgybcmaB325
CsGy3G016700Cucurbita maxima (Rimu)cgybcmaB342
CsGy3G016700Cucurbita maxima (Rimu)cgybcmaB352
CsGy3G016700Cucurbita maxima (Rimu)cgybcmaB394
CsGy3G016700Cucurbita maxima (Rimu)cgybcmaB399
CsGy3G016700Cucurbita maxima (Rimu)cgybcmaB463
CsGy3G016700Cucurbita moschata (Rifu)cgybcmoB296
CsGy3G016700Cucurbita moschata (Rifu)cgybcmoB312
CsGy3G016700Cucurbita moschata (Rifu)cgybcmoB324
CsGy3G016700Cucurbita moschata (Rifu)cgybcmoB365
CsGy3G016700Cucurbita moschata (Rifu)cgybcmoB371
CsGy3G016700Cucurbita moschata (Rifu)cgybcmoB432
CsGy3G016700Cucurbita pepo (Zucchini)cgybcpeB287
CsGy3G016700Cucurbita pepo (Zucchini)cgybcpeB314
CsGy3G016700Cucurbita pepo (Zucchini)cgybcpeB327
CsGy3G016700Cucurbita pepo (Zucchini)cgybcpeB427
CsGy3G016700Cucumber (Chinese Long) v2cgybcuB127
CsGy3G016700Cucumber (Chinese Long) v2cgybcuB128
CsGy3G016700Bottle gourd (USVL1VR-Ls)cgyblsiB141
CsGy3G016700Bottle gourd (USVL1VR-Ls)cgyblsiB197
CsGy3G016700Melon (DHL92) v3.5.1cgybmeB141
CsGy3G016700Melon (DHL92) v3.5.1cgybmeB200
CsGy3G016700Melon (DHL92) v3.6.1cgybmedB137
CsGy3G016700Watermelon (Charleston Gray)cgybwcgB191
CsGy3G016700Watermelon (Charleston Gray)cgybwcgB203
CsGy3G016700Watermelon (97103) v1cgybwmB217
CsGy3G016700Watermelon (97103) v1cgybwmB246
CsGy3G016700Wild cucumber (PI 183967)cgybcpiB129
CsGy3G016700Wild cucumber (PI 183967)cgybcpiB130
CsGy3G016700Silver-seed gourdcarcgybB0006
CsGy3G016700Silver-seed gourdcarcgybB0707
CsGy3G016700Silver-seed gourdcarcgybB0906
CsGy3G016700Silver-seed gourdcarcgybB0926
CsGy3G016700Cucumber (Chinese Long) v3cgybcucB117
CsGy3G016700Cucumber (Chinese Long) v3cgybcucB135
CsGy3G016700Watermelon (97103) v2cgybwmbB172
CsGy3G016700Watermelon (97103) v2cgybwmbB196
CsGy3G016700Watermelon (97103) v2cgybwmbB216
CsGy3G016700Wax gourdcgybwgoB241
CsGy3G016700Wax gourdcgybwgoB274