CsGy3G016650 (gene) Cucumber (Gy14) v2

Overview
NameCsGy3G016650
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
DescriptionUnknown Protein
LocationChr3 : 12368022 .. 12369172 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGTCAACAGTAGCCACCCCTACCAATCTGCAATTTCCATCGTCATCCAATCTCTCTCCTTTTCCACTTCTTATGATTCCTCTTGATTCTTCAGAACTCAGCACGGTTTTTACTAGCAATGGAGGAGCTCTATACAAACTCCCAATTGAGAATATGAACTTTGACTCAAATTCAAGCTCAACCTGCTTGCAGATATAGCAAATCAGATCACTGTTATTAATATTTACAATTGAATCAACTAGTGTTTTCTAAGATTTTGTTGAACTAGAACTTTTATCAAACAACTTATGGGCGTGATTACCTTGCCAGACTCTTGATTGATGCTTCCTTGGAAGAATTCAGGAAGAACATCAATCTTCAGAAACGGTGGCAATGGCAGACCCAGAAACTTAGTGGTTTGAGTTGTCAATGGTGGGATGTAAAGGGTGTCAACATCGAAAGAAACTAAAAGTCGGCTGTTGCTGCCATTATCATCGTGGATCTTGACAGACCCAGTTCCTGTTCCTCCTTCAGCATTATATTGGAAATCAGGGAATCTAGAAATGCCAAGCTTGCAAGCTGTGAGAGACTTGAAATGAACAGTGGAAATATTAGATTTTGGGATCTTTGTGGTGGTGGGAATGGTGGGTGTTTCTTGGTTTTGACTGTTGAGACAGGAAGTGGGAGAAAATTTGATGCTTTTGCCTCCAAGGTTGGATCTTTTTGTGGAAAATTTGAAGAGAATTGGGGTATTGGGAGAGTTCAGTTTACACCCCATTTGGGGAACTCTCTTATGGTAGGTCTTGTGTTAAGAGAAAGAGAGAGAGAGAAATGATAAAGCAGGAATATCCAAATTATCCCTGAAATCAAAGCATAATGTTTTTTGTGAGGCTGTCTTCAGTTTGTGTGATTCTTAATGACCCTTATCCTTTATCCTTTTATCATGTTGTTATCTGTTCTTTAAAGCTTGGTATTCCACACCACAATCCTATTCTACTTTTCAATCCCAACCAAACATAAGAAGGAGGAGAATAAAAAGCTTGTGGTTCATATTTTTTTGTCATTAGTACTCTACGCTAAAATTTGTCAGCCTTGGTTCTTTTTCTTTTCTTTTCCTTAAGATTTTCATGGCTTCTGCCATCTTCAACGACTTCCATCATCTCAGATAG

mRNA sequence

ATGGGGTCAACAGTAGCCACCCCTACCAATCTGCAATTTCCATCGTCATCCAATCTCTCTCCTTTTCCACTTCTTATGATTCCTCTTGATTCTTCAGAACTCAGCACGAACTTTTATCAAACAACTTATGGGCGTGATTACCTTGCCAGACTCTTGATTGATGCTTCCTTGGAAGAATTCAGGAAGAACATCAATCTTCAGAAACGGTGGCAATGGCAGACCCAGAAACTTAGTGGTTTGAGTTGTCAATGGTGGGATTCGGCTGTTGCTGCCATTATCATCGTGGATCTTGACAGACCCAGTTCCTGTTCCTCCTTCAGCATTATATTGGAAATCAGGGAATCTAGAAATGCCAAGCTTGCAAGCTGTGAGAGACTTGAAATGAACAGTGGAAATATTAGATTTTGGGATCTTTGTGGTGGTGGGAATGGTGGGTGTTTCTTGGTTTTGACTGTTGAGACAGGAAGTGGGAGAAAATTTGATGCTTTTGCCTCCAAGGTTGGATCTTTTTGTGGAAAATTTGAAGAGAATTGGGGTATTGGGAGAGTTCAGTTTACACCCCATTTGGGGAACTCTCTTATGATTTTCATGGCTTCTGCCATCTTCAACGACTTCCATCATCTCAGATAG

Coding sequence (CDS)

ATGGGGTCAACAGTAGCCACCCCTACCAATCTGCAATTTCCATCGTCATCCAATCTCTCTCCTTTTCCACTTCTTATGATTCCTCTTGATTCTTCAGAACTCAGCACGAACTTTTATCAAACAACTTATGGGCGTGATTACCTTGCCAGACTCTTGATTGATGCTTCCTTGGAAGAATTCAGGAAGAACATCAATCTTCAGAAACGGTGGCAATGGCAGACCCAGAAACTTAGTGGTTTGAGTTGTCAATGGTGGGATTCGGCTGTTGCTGCCATTATCATCGTGGATCTTGACAGACCCAGTTCCTGTTCCTCCTTCAGCATTATATTGGAAATCAGGGAATCTAGAAATGCCAAGCTTGCAAGCTGTGAGAGACTTGAAATGAACAGTGGAAATATTAGATTTTGGGATCTTTGTGGTGGTGGGAATGGTGGGTGTTTCTTGGTTTTGACTGTTGAGACAGGAAGTGGGAGAAAATTTGATGCTTTTGCCTCCAAGGTTGGATCTTTTTGTGGAAAATTTGAAGAGAATTGGGGTATTGGGAGAGTTCAGTTTACACCCCATTTGGGGAACTCTCTTATGATTTTCATGGCTTCTGCCATCTTCAACGACTTCCATCATCTCAGATAG

Protein sequence

MGSTVATPTNLQFPSSSNLSPFPLLMIPLDSSELSTNFYQTTYGRDYLARLLIDASLEEFRKNINLQKRWQWQTQKLSGLSCQWWDSAVAAIIIVDLDRPSSCSSFSIILEIRESRNAKLASCERLEMNSGNIRFWDLCGGGNGGCFLVLTVETGSGRKFDAFASKVGSFCGKFEENWGIGRVQFTPHLGNSLMIFMASAIFNDFHHLR
Homology
[Close]
BLAST of CsGy3G016650 vs. NCBI nr
Match: PNY08171.1 (ABC transporter B family member 28-like protein [Trifolium pratense])

HSP 1 Score: 56.6 bits (135), Expect = 1.2e-04
Identity = 26/38 (68.42%), Postives = 33/38 (86.84%), Query Frame = 0 

Query: 1   MGSTVATPTNLQFPSSSNLSPFPLLMIPLDSSELSTNF 39
           +GSTVATPT+LQFPSSSNL P PL ++P DSS+++T F
Sbjct: 883 IGSTVATPTSLQFPSSSNLMPLPLFIVPFDSSDVNTVF 920

[Close]
BLAST of CsGy3G016650 vs. NCBI nr
Match: PON57834.1 (hypothetical protein TorRG33x02_292880 [Trema orientalis])

HSP 1 Score: 56.6 bits (135), Expect = 1.2e-04
Identity = 27/36 (75.00%), Postives = 31/36 (86.11%), Query Frame = 0 

Query: 1   MGSTVATPTNLQFPSSSNLSPFPLLMIPLDSSELST 37
           MGSTVATPTNL FPS SNLSP PLL+ P DSS+++T
Sbjct: 80  MGSTVATPTNLHFPSLSNLSPLPLLIFPTDSSDVNT 115

[Close]
BLAST of CsGy3G016650 vs. NCBI nr
Match: PON69919.1 (hypothetical protein PanWU01x14_083830 [Parasponia andersonii])

HSP 1 Score: 53.9 bits (128), Expect = 7.5e-04
Identity = 26/36 (72.22%), Postives = 30/36 (83.33%), Query Frame = 0 

Query: 1   MGSTVATPTNLQFPSSSNLSPFPLLMIPLDSSELST 37
           MG TVATPT+L FPS SNLSP PLL+ P DSS++ST
Sbjct: 77  MGPTVATPTSLHFPSLSNLSPLPLLIFPTDSSDVST 112

[Close]
BLAST of CsGy3G016650 vs. TrEMBL
Match: tr|A0A2P5CA13|A0A2P5CA13_9ROSA (Uncharacterized protein OS=Trema orientalis OX=63057 GN=TorRG33x02_292880 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 7.7e-05
Identity = 27/36 (75.00%), Postives = 31/36 (86.11%), Query Frame = 0 

Query: 1   MGSTVATPTNLQFPSSSNLSPFPLLMIPLDSSELST 37
           MGSTVATPTNL FPS SNLSP PLL+ P DSS+++T
Sbjct: 80  MGSTVATPTNLHFPSLSNLSPLPLLIFPTDSSDVNT 115

[Close]
BLAST of CsGy3G016650 vs. TrEMBL
Match: tr|A0A2K3NYQ8|A0A2K3NYQ8_TRIPR (ABC transporter B family member 28-like protein OS=Trifolium pratense OX=57577 GN=L195_g004684 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 7.7e-05
Identity = 26/38 (68.42%), Postives = 33/38 (86.84%), Query Frame = 0 

Query: 1   MGSTVATPTNLQFPSSSNLSPFPLLMIPLDSSELSTNF 39
           +GSTVATPT+LQFPSSSNL P PL ++P DSS+++T F
Sbjct: 883 IGSTVATPTSLQFPSSSNLMPLPLFIVPFDSSDVNTVF 920

[Close]
BLAST of CsGy3G016650 vs. TrEMBL
Match: tr|A0A2P5D9F2|A0A2P5D9F2_PARAD (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_083830 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 5.0e-04
Identity = 26/36 (72.22%), Postives = 30/36 (83.33%), Query Frame = 0 

Query: 1   MGSTVATPTNLQFPSSSNLSPFPLLMIPLDSSELST 37
           MG TVATPT+L FPS SNLSP PLL+ P DSS++ST
Sbjct: 77  MGPTVATPTSLHFPSLSNLSPLPLLIFPTDSSDVST 112

The following BLAST results are available for this feature:
BLAST of CsGy3G016650 vs. NCBI nr
Match NameE-valueIdentityDescription
PNY08171.11.2e-0468.42ABC transporter B family member 28-like protein [Trifolium pratense][more]
PON57834.11.2e-0475.00hypothetical protein TorRG33x02_292880 [Trema orientalis][more]
PON69919.17.5e-0472.22hypothetical protein PanWU01x14_083830 [Parasponia andersonii][more]
BLAST of CsGy3G016650 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsGy3G016650 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsGy3G016650 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A2P5CA13|A0A2P5CA13_9ROSA7.7e-0575.00Uncharacterized protein OS=Trema orientalis OX=63057 GN=TorRG33x02_292880 PE=4 S... [more]
tr|A0A2K3NYQ8|A0A2K3NYQ8_TRIPR7.7e-0568.42ABC transporter B family member 28-like protein OS=Trifolium pratense OX=57577 G... [more]
tr|A0A2P5D9F2|A0A2P5D9F2_PARAD5.0e-0472.22Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_083830 PE... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy3G016650.1CsGy3G016650.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsGy3G016650Wax gourdcgybwgoB274
CsGy3G016650Cucumber (Gy14) v2cgybcgybB087
CsGy3G016650Cucumber (Gy14) v2cgybcgybB091
CsGy3G016650Cucurbita maxima (Rimu)cgybcmaB325
CsGy3G016650Cucurbita maxima (Rimu)cgybcmaB342
CsGy3G016650Cucurbita maxima (Rimu)cgybcmaB352
CsGy3G016650Cucurbita maxima (Rimu)cgybcmaB394
CsGy3G016650Cucurbita maxima (Rimu)cgybcmaB399
CsGy3G016650Cucurbita maxima (Rimu)cgybcmaB463
CsGy3G016650Cucurbita moschata (Rifu)cgybcmoB296
CsGy3G016650Cucurbita moschata (Rifu)cgybcmoB312
CsGy3G016650Cucurbita moschata (Rifu)cgybcmoB324
CsGy3G016650Cucurbita moschata (Rifu)cgybcmoB365
CsGy3G016650Cucurbita moschata (Rifu)cgybcmoB371
CsGy3G016650Cucurbita moschata (Rifu)cgybcmoB432
CsGy3G016650Cucurbita pepo (Zucchini)cgybcpeB287
CsGy3G016650Cucurbita pepo (Zucchini)cgybcpeB314
CsGy3G016650Cucurbita pepo (Zucchini)cgybcpeB327
CsGy3G016650Cucurbita pepo (Zucchini)cgybcpeB427
CsGy3G016650Cucumber (Chinese Long) v2cgybcuB127
CsGy3G016650Cucumber (Chinese Long) v2cgybcuB109
CsGy3G016650Cucumber (Chinese Long) v2cgybcuB128
CsGy3G016650Bottle gourd (USVL1VR-Ls)cgyblsiB141
CsGy3G016650Bottle gourd (USVL1VR-Ls)cgyblsiB197
CsGy3G016650Melon (DHL92) v3.5.1cgybmeB141
CsGy3G016650Melon (DHL92) v3.5.1cgybmeB200
CsGy3G016650Melon (DHL92) v3.6.1cgybmedB137
CsGy3G016650Melon (DHL92) v3.6.1cgybmedB201
CsGy3G016650Watermelon (Charleston Gray)cgybwcgB191
CsGy3G016650Watermelon (Charleston Gray)cgybwcgB203
CsGy3G016650Watermelon (97103) v1cgybwmB217
CsGy3G016650Watermelon (97103) v1cgybwmB246
CsGy3G016650Wild cucumber (PI 183967)cgybcpiB110
CsGy3G016650Wild cucumber (PI 183967)cgybcpiB129
CsGy3G016650Wild cucumber (PI 183967)cgybcpiB130
CsGy3G016650Silver-seed gourdcarcgybB0006
CsGy3G016650Silver-seed gourdcarcgybB0707
CsGy3G016650Silver-seed gourdcarcgybB0859
CsGy3G016650Silver-seed gourdcarcgybB0906
CsGy3G016650Silver-seed gourdcarcgybB0926
CsGy3G016650Cucumber (Chinese Long) v3cgybcucB117
CsGy3G016650Cucumber (Chinese Long) v3cgybcucB135
CsGy3G016650Watermelon (97103) v2cgybwmbB172
CsGy3G016650Watermelon (97103) v2cgybwmbB196
CsGy3G016650Watermelon (97103) v2cgybwmbB216