CsGy3G009930 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy3G009930
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Pentatricopeptide repeat-containing protein
Location	Chr3 : 7920667 .. 7922621 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTATGGAGAGGGCAAAAAAGCATTAAAAGCTTTTCAGGATATGGAGTTGAGTGGTGTTCTTCCTGATTCTGTTGCTTTCATTGCCTTCATTTTTGCCTGCAGTCATTCTGGAATGGTCAAAGAGGGGCTCAGATTCTTTGATCGAATGAAAACAGACTACAATCTTGAGCCCAGGATGGAACATTATGCTTGTGTCGTTGATCTTCTGGCTCGATCTGGCTTACTAGCTCAGGCAGAGGAGTTTATTCTGTCAATGCCAATGAAACCAGATGCAAGTTTATGGGGAGCTTTACTTAGTGCCTGTCGAGCAAGAGGGAACACAAATATCGCTCAACGTGTCTCAAAGAAAATTCTTGAGTTGAACTCAGATGATACTGGGTATTATGTGCTTGTATCAAATATTTATGCTACCTTAGGGAAGTGGGATCAGGTGAAAACGGTTAGAAATTCCATGAAAACAAAAGGACTCAAGAAAGAACCTGGAAGTAGCTGGATTGAGATTCAGAAAAGGGTCTATGTTTTTAGGACTGGTGATAAATCATTTGAACAGTATGACAAGGTCAAAGATTTACTTGAATACCTTGTCAGGTTAATGGCCAAGGAAGGTTACGTTGCAGACCTGCAATTTGCTTTGCATGACGTCGAGGAAGATGATAAGAGAGACATGCTATGTGGGCACAGTGAAAGACTTGCAATCGCCTTTGGATTGTTAAATACAAAACCAGGGAGCCCTCTGCTGGTAATGAAAAACCTTCGAGTATGTGGAGATTGTCATACTGTAACTAAGTACATAACTAAGATAATGCAAAGAGAAATACTAGTGAGAGATGCCAATCGCTTTCACCGTTTCAAGGATGGAGCCTGTAGTTGTGGAGATCACTGGTGAATAATCATTATTTCTAGTACCTGATTGCGTCTTCACATTGGACTACAAATAGTCCAGTTGAACTGCTTCATCTTTGTCCAAGTTTAGTGCAAATTCAAGAAGGTTCGCCTCCTGCTAAGTTACACGATTGCTGTCAATCTGCGTAACCTTGGATGTTATAATTTTTTTTAAAAAAATTTCGACAAACTAAAAGAAGATTTAGCTCAAGACATGCACTTTAGAGCAATCTACGAGAGCATTGGATGCCACATGATATTGTCCAAAAAGGTAGGATTATGAAAATGCACATAGAGTGCTAGCTACTGCGTGGCTGGTAATTCTATTTTGATATGGCTACCATTTTCCCCAATGATATATCTTGCACTAGAGCATGTTCTTTGATGTGAACCATTGTATGCGCATTCCATGCAGATTTTTCCAACTCTTGATGACCTCTCGTGCTGGCCTATGAATCAAATTTTAAAGGTTCGTCTTTCTTTCATTCCTTCTGATTTCTCTTTCTACCGAGTGTTCTTAAAAACTTGAAGTCCTAAGCAGTGAAAGTGAAGGGGAAAAGAACGATAACACACATTTTTACTATCAACTGTTCCATTTATAGAAGAACAGGTGAATAGAGGTATAAAAAATCAATCAAAACAAACGATTTCAATGAGATAGAAGAAGAATGTCACGTTCTGTTAATTTCTCGTTCTCTTCCAGAATTGAACTGTTTCCTTTCACTGATGTGGTAAATATTTCTTCTACAAGTCAACGTAGGTTGCTTAGCTGAGGATGGGAAAATTAATCTCTTTTGTGGTTGGCAATCGTTTGTCCAACTTAACCTTTATTGTAATTAATTTCAGTATTCTATTGCCATGCAGTTCTCGCGCACTCTGCCTTTGCCTTCAGTTTCTCTCTTAAAGGCCACTTTGATAATTGGAGATTCTGGAATTGTTCACGGCCAGTTTCTGACCTCCTTTAAGGAGATATTTAGCTATGAACCCAAAGATAACTCAAACAGTGAAGACATTATATCATCGACTAAAAGGTTAGACACTCAAATTTCTATTCGCTTTATCTGTTCATAA

mRNA sequence

ATGTATGGAGAGGGCAAAAAAGCATTAAAAGCTTTTCAGGATATGGAGTTGAGTGGTGTTCTTCCTGATTCTGTTGCTTTCATTGCCTTCATTTTTGCCTGCAGTCATTCTGGAATGGTCAAAGAGGGGCTCAGATTCTTTGATCGAATGAAAACAGACTACAATCTTGAGCCCAGGATGGAACATTATGCTTGTGTCGTTGATCTTCTGGCTCGATCTGGCTTACTAGCTCAGGCAGAGGAGTTTATTCTGTCAATGCCAATGAAACCAGATGCAAGTTTATGGGGAGCTTTACTTAGTGCCTGTCGAGCAAGAGGGAACACAAATATCGCTCAACGTGTCTCAAAGAAAATTCTTGAGTTGAACTCAGATGATACTGGGTATTATGTGCTTGTATCAAATATTTATGCTACCTTAGGGAAGTGGGATCAGGTGAAAACGGTTAGAAATTCCATGAAAACAAAAGGACTCAAGAAAGAACCTGGAAGTAGCTGGATTGAGATTCAGAAAAGGGTCTATGTTTTTAGGACTGGTGATAAATCATTTGAACAGTATGACAAGGTCAAAGATTTACTTGAATACCTTGTCAGGTTAATGGCCAAGGAAGGTTACGTTGCAGACCTGCAATTTGCTTTGCATGACGTCGAGGAAGATGATAAGAGAGACATGCTATGTGGGCACAGTGAAAGACTTGCAATCGCCTTTGGATTGTTAAATACAAAACCAGGGAGCCCTCTGCTGATTTTTCCAACTCTTGATGACCTCTCGTGCTGGCCTATGAATCAAATTTTAAAGTTCTCGCGCACTCTGCCTTTGCCTTCAGTTTCTCTCTTAAAGGCCACTTTGATAATTGGAGATTCTGGAATTGTTCACGGCCAGTTTCTGACCTCCTTTAAGGAGATATTTAGCTATGAACCCAAAGATAACTCAAACAGTGAAGACATTATATCATCGACTAAAAGGTTAGACACTCAAATTTCTATTCGCTTTATCTGTTCATAA

Coding sequence (CDS)

ATGTATGGAGAGGGCAAAAAAGCATTAAAAGCTTTTCAGGATATGGAGTTGAGTGGTGTTCTTCCTGATTCTGTTGCTTTCATTGCCTTCATTTTTGCCTGCAGTCATTCTGGAATGGTCAAAGAGGGGCTCAGATTCTTTGATCGAATGAAAACAGACTACAATCTTGAGCCCAGGATGGAACATTATGCTTGTGTCGTTGATCTTCTGGCTCGATCTGGCTTACTAGCTCAGGCAGAGGAGTTTATTCTGTCAATGCCAATGAAACCAGATGCAAGTTTATGGGGAGCTTTACTTAGTGCCTGTCGAGCAAGAGGGAACACAAATATCGCTCAACGTGTCTCAAAGAAAATTCTTGAGTTGAACTCAGATGATACTGGGTATTATGTGCTTGTATCAAATATTTATGCTACCTTAGGGAAGTGGGATCAGGTGAAAACGGTTAGAAATTCCATGAAAACAAAAGGACTCAAGAAAGAACCTGGAAGTAGCTGGATTGAGATTCAGAAAAGGGTCTATGTTTTTAGGACTGGTGATAAATCATTTGAACAGTATGACAAGGTCAAAGATTTACTTGAATACCTTGTCAGGTTAATGGCCAAGGAAGGTTACGTTGCAGACCTGCAATTTGCTTTGCATGACGTCGAGGAAGATGATAAGAGAGACATGCTATGTGGGCACAGTGAAAGACTTGCAATCGCCTTTGGATTGTTAAATACAAAACCAGGGAGCCCTCTGCTGATTTTTCCAACTCTTGATGACCTCTCGTGCTGGCCTATGAATCAAATTTTAAAGTTCTCGCGCACTCTGCCTTTGCCTTCAGTTTCTCTCTTAAAGGCCACTTTGATAATTGGAGATTCTGGAATTGTTCACGGCCAGTTTCTGACCTCCTTTAAGGAGATATTTAGCTATGAACCCAAAGATAACTCAAACAGTGAAGACATTATATCATCGACTAAAAGGTTAGACACTCAAATTTCTATTCGCTTTATCTGTTCATAA

Protein sequence

MYGEGKKALKAFQDMELSGVLPDSVAFIAFIFACSHSGMVKEGLRFFDRMKTDYNLEPRMEHYACVVDLLARSGLLAQAEEFILSMPMKPDASLWGALLSACRARGNTNIAQRVSKKILELNSDDTGYYVLVSNIYATLGKWDQVKTVRNSMKTKGLKKEPGSSWIEIQKRVYVFRTGDKSFEQYDKVKDLLEYLVRLMAKEGYVADLQFALHDVEEDDKRDMLCGHSERLAIAFGLLNTKPGSPLLIFPTLDDLSCWPMNQILKFSRTLPLPSVSLLKATLIIGDSGIVHGQFLTSFKEIFSYEPKDNSNSEDIISSTKRLDTQISIRFICS

Homology

[Close]

BLAST of CsGy3G009930 vs. NCBI nr
Match: XP_004134352.2 (PREDICTED: pentatricopeptide repeat-containing protein At3g03580 [Cucumis sativus] >KGN56628.1 hypothetical protein Csa_3G126920 [Cucumis sativus])

HSP 1 Score: 500.0 bits (1286), Expect = 6.3e-138
Identity = 248/252 (98.41%), Postives = 249/252 (98.81%), Query Frame = 0


Query: 1   MYGEGKKALKAFQDMELSGVLPDSVAFIAFIFACSHSGMVKEGLRFFDRMKTDYNLEPRM 60
           MYGEGKKALKAFQDMELSGVLPDSVAFIAFIFACSHSGMVKEGLRFFDRMKTDYNLEPRM
Sbjct: 601 MYGEGKKALKAFQDMELSGVLPDSVAFIAFIFACSHSGMVKEGLRFFDRMKTDYNLEPRM 660

Query: 61  EHYACVVDLLARSGLLAQAEEFILSMPMKPDASLWGALLSACRARGNTNIAQRVSKKILE 120
           EHYACVVDLLARSGLLAQAEEFILSMPMKPDASLWGALLSACRARGNTNIAQRVSKKILE
Sbjct: 661 EHYACVVDLLARSGLLAQAEEFILSMPMKPDASLWGALLSACRARGNTNIAQRVSKKILE 720

Query: 121 LNSDDTGYYVLVSNIYATLGKWDQVKTVRNSMKTKGLKKEPGSSWIEIQKRVYVFRTGDK 180
           LNSDDTGYYVLVSNIYATLGKWDQVKTVRNSMKTKGLKKEPGSSWIEIQKRVYVFRTGDK
Sbjct: 721 LNSDDTGYYVLVSNIYATLGKWDQVKTVRNSMKTKGLKKEPGSSWIEIQKRVYVFRTGDK 780

Query: 181 SFEQYDKVKDLLEYLVRLMAKEGYVADLQFALHDVEEDDKRDMLCGHSERLAIAFGLLNT 240
           SFEQYDKVKDLLEYLVRLMAKEGYVADLQFALHDVEEDDKRDMLCGHSERLAIAFGLLNT
Sbjct: 781 SFEQYDKVKDLLEYLVRLMAKEGYVADLQFALHDVEEDDKRDMLCGHSERLAIAFGLLNT 840

Query: 241 KPGSPLLIFPTL 253
           KPGSPLL+   L
Sbjct: 841 KPGSPLLVMKNL 852

[Close]

BLAST of CsGy3G009930 vs. NCBI nr
Match: XP_016899076.1 (PREDICTED: pentatricopeptide repeat-containing protein At3g03580 [Cucumis melo])

HSP 1 Score: 483.0 bits (1242), Expect = 8.0e-133
Identity = 240/252 (95.24%), Postives = 243/252 (96.43%), Query Frame = 0


Query: 1   MYGEGKKALKAFQDMELSGVLPDSVAFIAFIFACSHSGMVKEGLRFFDRMKTDYNLEPRM 60
           MYGEGKKALKAFQDMELSGV PDSVAFIAFIFACSHSGMV EGLRFFDRMKTDYNLEPRM
Sbjct: 601 MYGEGKKALKAFQDMELSGVFPDSVAFIAFIFACSHSGMVNEGLRFFDRMKTDYNLEPRM 660

Query: 61  EHYACVVDLLARSGLLAQAEEFILSMPMKPDASLWGALLSACRARGNTNIAQRVSKKILE 120
           EHYACVVDLLARSGLLAQAEEFILSMPMKPDASLWGALLSACRA GNTNIAQRVSKKILE
Sbjct: 661 EHYACVVDLLARSGLLAQAEEFILSMPMKPDASLWGALLSACRASGNTNIAQRVSKKILE 720

Query: 121 LNSDDTGYYVLVSNIYATLGKWDQVKTVRNSMKTKGLKKEPGSSWIEIQKRVYVFRTGDK 180
           LNSD+TGYYVLVSNIYATLGKWDQVK VRNSMKTKGLKK+PGSSWIEIQKRVYVFRTGDK
Sbjct: 721 LNSDNTGYYVLVSNIYATLGKWDQVKMVRNSMKTKGLKKDPGSSWIEIQKRVYVFRTGDK 780

Query: 181 SFEQYDKVKDLLEYLVRLMAKEGYVADLQFALHDVEEDDKRDMLCGHSERLAIAFGLLNT 240
           SFEQYDKVKDLLEYLV LMAKEGYVADLQFALHDVEEDDKRDMLCGHSERLAIAFGLLNT
Sbjct: 781 SFEQYDKVKDLLEYLVGLMAKEGYVADLQFALHDVEEDDKRDMLCGHSERLAIAFGLLNT 840

Query: 241 KPGSPLLIFPTL 253
           KPGS LL+   L
Sbjct: 841 KPGSSLLVMKNL 852

[Close]

BLAST of CsGy3G009930 vs. NCBI nr
Match: XP_023540929.1 (pentatricopeptide repeat-containing protein At3g03580 [Cucurbita pepo subsp. pepo] >XP_023540930.1 pentatricopeptide repeat-containing protein At3g03580 [Cucurbita pepo subsp. pepo] >XP_023540931.1 pentatricopeptide repeat-containing protein At3g03580 [Cucurbita pepo subsp. pepo] >XP_023540932.1 pentatricopeptide repeat-containing protein At3g03580 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 455.7 bits (1171), Expect = 1.4e-124
Identity = 223/252 (88.49%), Postives = 237/252 (94.05%), Query Frame = 0


Query: 1   MYGEGKKALKAFQDMELSGVLPDSVAFIAFIFACSHSGMVKEGLRFFDRMKTDYNLEPRM 60
           MYGEGKKALKAFQDME SGV+PDSVAFIA IFA SHSGMVK+GL FFDRMKTDYN+EPRM
Sbjct: 601 MYGEGKKALKAFQDMESSGVMPDSVAFIALIFAFSHSGMVKDGLAFFDRMKTDYNIEPRM 660

Query: 61  EHYACVVDLLARSGLLAQAEEFILSMPMKPDASLWGALLSACRARGNTNIAQRVSKKILE 120
           EHYACVVDLLARSGLLA+AEEFILSMPMKPDASLWGALLSACRA G+T+IAQRVS +IL+
Sbjct: 661 EHYACVVDLLARSGLLARAEEFILSMPMKPDASLWGALLSACRASGHTDIAQRVSNQILQ 720

Query: 121 LNSDDTGYYVLVSNIYATLGKWDQVKTVRNSMKTKGLKKEPGSSWIEIQKRVYVFRTGDK 180
           LNSD+TGYYVLVSN+YATLGKWDQV+ VRN+MK KGLKKEPGSSWIEIQKRVYVFRT DK
Sbjct: 721 LNSDNTGYYVLVSNVYATLGKWDQVRLVRNTMKNKGLKKEPGSSWIEIQKRVYVFRTSDK 780

Query: 181 SFEQYDKVKDLLEYLVRLMAKEGYVADLQFALHDVEEDDKRDMLCGHSERLAIAFGLLNT 240
           SFEQYDKV+D LEYL  LMAKEGYVADLQFALHDVEEDDKRDMLCGHSERLAIAFGLLNT
Sbjct: 781 SFEQYDKVRDFLEYLTGLMAKEGYVADLQFALHDVEEDDKRDMLCGHSERLAIAFGLLNT 840

Query: 241 KPGSPLLIFPTL 253
           KPGSPLL+   L
Sbjct: 841 KPGSPLLVMKNL 852

[Close]

BLAST of CsGy3G009930 vs. NCBI nr
Match: XP_022949990.1 (pentatricopeptide repeat-containing protein At3g03580 [Cucurbita moschata] >XP_022949997.1 pentatricopeptide repeat-containing protein At3g03580 [Cucurbita moschata] >XP_022950002.1 pentatricopeptide repeat-containing protein At3g03580 [Cucurbita moschata])

HSP 1 Score: 454.1 bits (1167), Expect = 4.0e-124
Identity = 222/252 (88.10%), Postives = 236/252 (93.65%), Query Frame = 0


Query: 1   MYGEGKKALKAFQDMELSGVLPDSVAFIAFIFACSHSGMVKEGLRFFDRMKTDYNLEPRM 60
           MYGEGKKALKAFQDME SGV+PDSVAFIA IFA SHSGMVK+GL FFDRMKTDYN+EPRM
Sbjct: 601 MYGEGKKALKAFQDMESSGVIPDSVAFIALIFAFSHSGMVKDGLAFFDRMKTDYNIEPRM 660

Query: 61  EHYACVVDLLARSGLLAQAEEFILSMPMKPDASLWGALLSACRARGNTNIAQRVSKKILE 120
           EHYACVVDLLARSGLLA+AEEFILSMPMKPDASLWGALLSACR  G+T+IAQRVS +IL+
Sbjct: 661 EHYACVVDLLARSGLLARAEEFILSMPMKPDASLWGALLSACRVSGHTDIAQRVSNQILQ 720

Query: 121 LNSDDTGYYVLVSNIYATLGKWDQVKTVRNSMKTKGLKKEPGSSWIEIQKRVYVFRTGDK 180
           LNSD+TGYYVLVSN+YATLGKWDQV+ VRN+MK KGLKKEPGSSWIEIQKRVYVFRT DK
Sbjct: 721 LNSDNTGYYVLVSNVYATLGKWDQVRLVRNTMKNKGLKKEPGSSWIEIQKRVYVFRTSDK 780

Query: 181 SFEQYDKVKDLLEYLVRLMAKEGYVADLQFALHDVEEDDKRDMLCGHSERLAIAFGLLNT 240
           SFEQYDKV+D LEYL  LMAKEGYVADLQFALHDVEEDDKRDMLCGHSERLAIAFGLLNT
Sbjct: 781 SFEQYDKVRDFLEYLTGLMAKEGYVADLQFALHDVEEDDKRDMLCGHSERLAIAFGLLNT 840

Query: 241 KPGSPLLIFPTL 253
           KPGSPLL+   L
Sbjct: 841 KPGSPLLVMKNL 852

[Close]

BLAST of CsGy3G009930 vs. NCBI nr
Match: XP_022146916.1 (pentatricopeptide repeat-containing protein At3g03580 [Momordica charantia])

HSP 1 Score: 433.7 bits (1114), Expect = 5.6e-118
Identity = 212/235 (90.21%), Postives = 223/235 (94.89%), Query Frame = 0


Query: 18  SGVLPDSVAFIAFIFACSHSGMVKEGLRFFDRMKTDYNLEPRMEHYACVVDLLARSGLLA 77
           SGV PDSVAFIA IFACSHSGMVKEGL +FDRMKTDYN+EP MEHYACVVDLLARSGLLA
Sbjct: 615 SGVFPDSVAFIALIFACSHSGMVKEGLTYFDRMKTDYNIEPMMEHYACVVDLLARSGLLA 674

Query: 78  QAEEFILSMPMKPDASLWGALLSACRARGNTNIAQRVSKKILELNSDDTGYYVLVSNIYA 137
           QAEEFILSMP+KPDASLWGALLSACRA G+TNIAQRVSK+IL+LNSDDTGYYVLVSNIYA
Sbjct: 675 QAEEFILSMPIKPDASLWGALLSACRATGHTNIAQRVSKQILQLNSDDTGYYVLVSNIYA 734

Query: 138 TLGKWDQVKTVRNSMKTKGLKKEPGSSWIEIQKRVYVFRTGDKSFEQYDKVKDLLEYLVR 197
           TLGKWDQV+ VRNSMKTKGLKKEPGSSWIEIQKR YVFRTGDKSFEQYDKVKDLLEYL  
Sbjct: 735 TLGKWDQVRMVRNSMKTKGLKKEPGSSWIEIQKRFYVFRTGDKSFEQYDKVKDLLEYLAG 794

Query: 198 LMAKEGYVADLQFALHDVEEDDKRDMLCGHSERLAIAFGLLNTKPGSPLLIFPTL 253
           LMAKEGYVADLQF+LHDVEEDDKRD+LCGHSERLAIAFGLLNTKPG+PLL+   L
Sbjct: 795 LMAKEGYVADLQFSLHDVEEDDKRDILCGHSERLAIAFGLLNTKPGTPLLVMKNL 849

[Close]

BLAST of CsGy3G009930 vs. TAIR10
Match: AT3G03580.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 305.1 bits (780), Expect = 5.4e-83
Identity = 145/253 (57.31%), Postives = 191/253 (75.49%), Query Frame = 0


Query: 1   MYGEGKKALKAFQDMELSGVLPDSVAFIAFIFACSHSGMVKEGLRFFDRMKTDYNLEPRM 60
           MYGEG+KAL+ F DME SG++PDSV FIA I+ACSHSG+V EGL  F++MKT Y ++P +
Sbjct: 587 MYGEGEKALETFADMEKSGIVPDSVVFIAIIYACSHSGLVDEGLACFEKMKTHYKIDPMI 646

Query: 61  EHYACVVDLLARSGLLAQAEEFILSMPMKPDASLWGALLSACRARGNTNIAQRVSKKILE 120
           EHYACVVDLL+RS  +++AEEFI +MP+KPDAS+W ++L ACR  G+   A+RVS++I+E
Sbjct: 647 EHYACVVDLLSRSQKISKAEEFIQAMPIKPDASIWASVLRACRTSGDMETAERVSRRIIE 706

Query: 121 LNSDDTGYYVLVSNIYATLGKWDQVKTVRNSMKTKGLKKEPGSSWIEIQKRVYVFRTGDK 180
           LN DD GY +L SN YA L KWD+V  +R S+K K + K PG SWIE+ K V+VF +GD 
Sbjct: 707 LNPDDPGYSILASNAYAALRKWDKVSLIRKSLKDKHITKNPGYSWIEVGKNVHVFSSGDD 766

Query: 181 SFEQYDKVKDLLEYLVRLMAKEGYVADLQFALHDV-EEDDKRDMLCGHSERLAIAFGLLN 240
           S  Q + +   LE L  LMAKEGY+ D +    ++ EE++KR ++CGHSERLAIAFGLLN
Sbjct: 767 SAPQSEAIYKSLEILYSLMAKEGYIPDPREVSQNLEEEEEKRRLICGHSERLAIAFGLLN 826

Query: 241 TKPGSPLLIFPTL 253
           T+PG+PL +   L
Sbjct: 827 TEPGTPLQVMKNL 839

[Close]

BLAST of CsGy3G009930 vs. TAIR10
Match: AT1G20230.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 246.5 bits (628), Expect = 2.3e-65
Identity = 110/266 (41.35%), Postives = 176/266 (66.17%), Query Frame = 0


Query: 1   MYGEGKKALKAFQDMELSGVLPDSVAFIAFIFACSHSGMVKEGLRFFDRMKTDYNLEPRM 60
           M+G+ K+ +  F+ +  + + PD ++F + + AC   G+  EG ++F  M  +Y ++PR+
Sbjct: 466 MHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYFKMMSEEYGIKPRL 525

Query: 61  EHYACVVDLLARSGLLAQAEEFILSMPMKPDASLWGALLSACRARGNTNIAQRVSKKILE 120
           EHY+C+V+LL R+G L +A + I  MP +PD+ +WGALL++CR + N ++A+  ++K+  
Sbjct: 526 EHYSCMVNLLGRAGKLQEAYDLIKEMPFEPDSCVWGALLNSCRLQNNVDLAEIAAEKLFH 585

Query: 121 LNSDDTGYYVLVSNIYATLGKWDQVKTVRNSMKTKGLKKEPGSSWIEIQKRVYVFRTGDK 180
           L  ++ G YVL+SNIYA  G W +V ++RN M++ GLKK PG SWI+++ RVY    GDK
Sbjct: 586 LEPENPGTYVLLSNIYAAKGMWTEVDSIRNKMESLGLKKNPGCSWIQVKNRVYTLLAGDK 645

Query: 181 SFEQYDKVKDLLEYLVRLMAKEGYVADLQFALHDVEEDDKRDMLCGHSERLAIAFGLLNT 240
           S  Q D++ + ++ + + M K G+  +L FALHDVEE ++  ML GHSE+LA+ FGLLNT
Sbjct: 646 SHPQIDQITEKMDEISKEMRKSGHRPNLDFALHDVEEQEQEQMLWGHSEKLAVVFGLLNT 705

Query: 241 KPGSPLLIFPTLDDLSCWPMNQILKF 267
             G+PL +   L    C   + ++KF
Sbjct: 706 PDGTPLQVIKNL--RICGDCHAVIKF 729

[Close]

BLAST of CsGy3G009930 vs. TAIR10
Match: AT4G18750.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 245.7 bits (626), Expect = 3.9e-65
Identity = 120/291 (41.24%), Postives = 188/291 (64.60%), Query Frame = 0


Query: 1   MYGEGKKALKAFQDMELSGVLPDSVAFIAFIFACSHSGMVKEGLRFFDRMKTDYNLEPRM 60
           M+G GK+A+  F  M  +G+  D ++F++ ++ACSHSG+V EG RFF+ M+ +  +EP +
Sbjct: 577 MHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTV 636

Query: 61  EHYACVVDLLARSGLLAQAEEFILSMPMKPDASLWGALLSACRARGNTNIAQRVSKKILE 120
           EHYAC+VD+LAR+G L +A  FI +MP+ PDA++WGALL  CR   +  +A++V++K+ E
Sbjct: 637 EHYACIVDMLARTGDLIKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAEKVAEKVFE 696

Query: 121 LNSDDTGYYVLVSNIYATLGKWDQVKTVRNSMKTKGLKKEPGSSWIEIQKRVYVFRTGDK 180
           L  ++TGYYVL++NIYA   KW+QVK +R  +  +GL+K PG SWIEI+ RV +F  GD 
Sbjct: 697 LEPENTGYYVLMANIYAEAEKWEQVKRLRKRIGQRGLRKNPGCSWIEIKGRVNIFVAGDS 756

Query: 181 SFEQYDKVKDLLEYLVRLMAKEGYVADLQFALHDVEEDDKRDMLCGHSERLAIAFGLLNT 240
           S  + + ++  L  +   M +EGY    ++AL D EE +K + LCGHSE+LA+A G++++
Sbjct: 757 SNPETENIEAFLRKVRARMIEEGYSPLTKYALIDAEEMEKEEALCGHSEKLAMALGIISS 816

Query: 241 KPGSPLLIFPTLDDLSCWPMNQILKFSRTLPLPSVSLLKATLIIGDSGIVH 292
             G   +I  T +   C   +++ KF          L +  +++ DS   H
Sbjct: 817 GHGK--IIRVTKNLRVCGDCHEMAKFMS-------KLTRREIVLRDSNRFH 858

[Close]

BLAST of CsGy3G009930 vs. TAIR10
Match: AT3G23330.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 238.4 bits (607), Expect = 6.2e-63
Identity = 108/248 (43.55%), Postives = 169/248 (68.15%), Query Frame = 0


Query: 1   MYGEGKKALKAFQDMELSGVLPDSVAFIAFIFACSHSGMVKEGLRFFDRMKTDYNLEPRM 60
           ++G G +A+  F++M+  GV P+ VAF+A + ACSH G+V E   +F+ M   Y L   +
Sbjct: 421 LHGHGHEAVSLFEEMKRQGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVYGLNQEL 480

Query: 61  EHYACVVDLLARSGLLAQAEEFILSMPMKPDASLWGALLSACRARGNTNIAQRVSKKILE 120
           EHYA V DLL R+G L +A  FI  M ++P  S+W  LLS+C    N  +A++V++KI  
Sbjct: 481 EHYAAVADLLGRAGKLEEAYNFISKMCVEPTGSVWSTLLSSCSVHKNLELAEKVAEKIFT 540

Query: 121 LNSDDTGYYVLVSNIYATLGKWDQVKTVRNSMKTKGLKKEPGSSWIEIQKRVYVFRTGDK 180
           ++S++ G YVL+ N+YA+ G+W ++  +R  M+ KGL+K+P  SWIE++ + + F +GD+
Sbjct: 541 VDSENMGAYVLMCNMYASNGRWKEMAKLRLRMRKKGLRKKPACSWIEMKNKTHGFVSGDR 600

Query: 181 SFEQYDKVKDLLEYLVRLMAKEGYVADLQFALHDVEEDDKRDMLCGHSERLAIAFGLLNT 240
           S    DK+ + L+ ++  M KEGYVAD    LHDV+E+ KR++L GHSERLA+AFG++NT
Sbjct: 601 SHPSMDKINEFLKAVMEQMEKEGYVADTSGVLHDVDEEHKRELLFGHSERLAVAFGIINT 660

Query: 241 KPGSPLLI 249
           +PG+ + +
Sbjct: 661 EPGTTIRV 668

[Close]

BLAST of CsGy3G009930 vs. TAIR10
Match: AT3G49142.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 238.0 bits (606), Expect = 8.1e-63
Identity = 112/239 (46.86%), Postives = 162/239 (67.78%), Query Frame = 0


Query: 3   GEGKKALKAFQDMELSGVLPDSVAFIAFIFACSHSGMVKEGLRFFDRMKTDYNLEPRMEH 62
           G G  A+  F  ++ SG++PDS+AF+  + ACSH+G+++EG   F  M   Y + PR+EH
Sbjct: 389 GRGCDAVALFSKLQDSGLVPDSIAFVTTLAACSHAGLLEEGRSCFKLMTDHYKITPRLEH 448

Query: 63  YACVVDLLARSGLLAQAEEFILSMPMKPDASLWGALLSACRARGNTNIAQRVSKKILELN 122
            AC+VDLL R+G + +A  FI  M M+P+  +WGALL ACR   +T+I    + K+ +L 
Sbjct: 449 LACMVDLLGRAGKVKEAYRFIQDMSMEPNERVWGALLGACRVHSDTDIGLLAADKLFQLA 508

Query: 123 SDDTGYYVLVSNIYATLGKWDQVKTVRNSMKTKGLKKEPGSSWIEIQKRVYVFRTGDKSF 182
            + +GYYVL+SNIYA  G+W++V  +RN MK+KGLKK PG+S +E+ + ++ F  GD+S 
Sbjct: 509 PEQSGYYVLLSNIYAKAGRWEEVTNIRNIMKSKGLKKNPGASNVEVNRIIHTFLVGDRSH 568

Query: 183 EQYDKVKDLLEYLVRLMAKEGYVADLQFALHDVEEDDKRDMLCGHSERLAIAFGLLNTK 242
            Q D++   L+ LV+ M + GYV D + ALHDVEE+DK   L  HSE+LAI F L+NTK
Sbjct: 569 PQSDEIYRELDVLVKKMKELGYVPDSESALHDVEEEDKETHLAVHSEKLAIVFALMNTK 627

[Close]

BLAST of CsGy3G009930 vs. Swiss-Prot
Match: sp|Q9SS60|PP210_ARATH (Pentatricopeptide repeat-containing protein At3g03580 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H23 PE=2 SV=1)

HSP 1 Score: 305.1 bits (780), Expect = 9.8e-82
Identity = 145/253 (57.31%), Postives = 191/253 (75.49%), Query Frame = 0


Query: 1   MYGEGKKALKAFQDMELSGVLPDSVAFIAFIFACSHSGMVKEGLRFFDRMKTDYNLEPRM 60
           MYGEG+KAL+ F DME SG++PDSV FIA I+ACSHSG+V EGL  F++MKT Y ++P +
Sbjct: 587 MYGEGEKALETFADMEKSGIVPDSVVFIAIIYACSHSGLVDEGLACFEKMKTHYKIDPMI 646

Query: 61  EHYACVVDLLARSGLLAQAEEFILSMPMKPDASLWGALLSACRARGNTNIAQRVSKKILE 120
           EHYACVVDLL+RS  +++AEEFI +MP+KPDAS+W ++L ACR  G+   A+RVS++I+E
Sbjct: 647 EHYACVVDLLSRSQKISKAEEFIQAMPIKPDASIWASVLRACRTSGDMETAERVSRRIIE 706

Query: 121 LNSDDTGYYVLVSNIYATLGKWDQVKTVRNSMKTKGLKKEPGSSWIEIQKRVYVFRTGDK 180
           LN DD GY +L SN YA L KWD+V  +R S+K K + K PG SWIE+ K V+VF +GD 
Sbjct: 707 LNPDDPGYSILASNAYAALRKWDKVSLIRKSLKDKHITKNPGYSWIEVGKNVHVFSSGDD 766

Query: 181 SFEQYDKVKDLLEYLVRLMAKEGYVADLQFALHDV-EEDDKRDMLCGHSERLAIAFGLLN 240
           S  Q + +   LE L  LMAKEGY+ D +    ++ EE++KR ++CGHSERLAIAFGLLN
Sbjct: 767 SAPQSEAIYKSLEILYSLMAKEGYIPDPREVSQNLEEEEEKRRLICGHSERLAIAFGLLN 826

Query: 241 TKPGSPLLIFPTL 253
           T+PG+PL +   L
Sbjct: 827 TEPGTPLQVMKNL 839

[Close]

BLAST of CsGy3G009930 vs. Swiss-Prot
Match: sp|Q9LNU6|PPR53_ARATH (Pentatricopeptide repeat-containing protein At1g20230 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H21 PE=2 SV=2)

HSP 1 Score: 246.5 bits (628), Expect = 4.1e-64
Identity = 110/266 (41.35%), Postives = 176/266 (66.17%), Query Frame = 0


Query: 1   MYGEGKKALKAFQDMELSGVLPDSVAFIAFIFACSHSGMVKEGLRFFDRMKTDYNLEPRM 60
           M+G+ K+ +  F+ +  + + PD ++F + + AC   G+  EG ++F  M  +Y ++PR+
Sbjct: 466 MHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYFKMMSEEYGIKPRL 525

Query: 61  EHYACVVDLLARSGLLAQAEEFILSMPMKPDASLWGALLSACRARGNTNIAQRVSKKILE 120
           EHY+C+V+LL R+G L +A + I  MP +PD+ +WGALL++CR + N ++A+  ++K+  
Sbjct: 526 EHYSCMVNLLGRAGKLQEAYDLIKEMPFEPDSCVWGALLNSCRLQNNVDLAEIAAEKLFH 585

Query: 121 LNSDDTGYYVLVSNIYATLGKWDQVKTVRNSMKTKGLKKEPGSSWIEIQKRVYVFRTGDK 180
           L  ++ G YVL+SNIYA  G W +V ++RN M++ GLKK PG SWI+++ RVY    GDK
Sbjct: 586 LEPENPGTYVLLSNIYAAKGMWTEVDSIRNKMESLGLKKNPGCSWIQVKNRVYTLLAGDK 645

Query: 181 SFEQYDKVKDLLEYLVRLMAKEGYVADLQFALHDVEEDDKRDMLCGHSERLAIAFGLLNT 240
           S  Q D++ + ++ + + M K G+  +L FALHDVEE ++  ML GHSE+LA+ FGLLNT
Sbjct: 646 SHPQIDQITEKMDEISKEMRKSGHRPNLDFALHDVEEQEQEQMLWGHSEKLAVVFGLLNT 705

Query: 241 KPGSPLLIFPTLDDLSCWPMNQILKF 267
             G+PL +   L    C   + ++KF
Sbjct: 706 PDGTPLQVIKNL--RICGDCHAVIKF 729

[Close]

BLAST of CsGy3G009930 vs. Swiss-Prot
Match: sp|Q9SN39|PP320_ARATH (Pentatricopeptide repeat-containing protein DOT4, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=DOT4 PE=2 SV=1)

HSP 1 Score: 245.7 bits (626), Expect = 7.0e-64
Identity = 120/291 (41.24%), Postives = 188/291 (64.60%), Query Frame = 0


Query: 1   MYGEGKKALKAFQDMELSGVLPDSVAFIAFIFACSHSGMVKEGLRFFDRMKTDYNLEPRM 60
           M+G GK+A+  F  M  +G+  D ++F++ ++ACSHSG+V EG RFF+ M+ +  +EP +
Sbjct: 577 MHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTV 636

Query: 61  EHYACVVDLLARSGLLAQAEEFILSMPMKPDASLWGALLSACRARGNTNIAQRVSKKILE 120
           EHYAC+VD+LAR+G L +A  FI +MP+ PDA++WGALL  CR   +  +A++V++K+ E
Sbjct: 637 EHYACIVDMLARTGDLIKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAEKVAEKVFE 696

Query: 121 LNSDDTGYYVLVSNIYATLGKWDQVKTVRNSMKTKGLKKEPGSSWIEIQKRVYVFRTGDK 180
           L  ++TGYYVL++NIYA   KW+QVK +R  +  +GL+K PG SWIEI+ RV +F  GD 
Sbjct: 697 LEPENTGYYVLMANIYAEAEKWEQVKRLRKRIGQRGLRKNPGCSWIEIKGRVNIFVAGDS 756

Query: 181 SFEQYDKVKDLLEYLVRLMAKEGYVADLQFALHDVEEDDKRDMLCGHSERLAIAFGLLNT 240
           S  + + ++  L  +   M +EGY    ++AL D EE +K + LCGHSE+LA+A G++++
Sbjct: 757 SNPETENIEAFLRKVRARMIEEGYSPLTKYALIDAEEMEKEEALCGHSEKLAMALGIISS 816

Query: 241 KPGSPLLIFPTLDDLSCWPMNQILKFSRTLPLPSVSLLKATLIIGDSGIVH 292
             G   +I  T +   C   +++ KF          L +  +++ DS   H
Sbjct: 817 GHGK--IIRVTKNLRVCGDCHEMAKFMS-------KLTRREIVLRDSNRFH 858

[Close]

BLAST of CsGy3G009930 vs. Swiss-Prot
Match: sp|Q9LW63|PP251_ARATH (Putative pentatricopeptide repeat-containing protein At3g23330 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H32 PE=3 SV=1)

HSP 1 Score: 238.4 bits (607), Expect = 1.1e-61
Identity = 108/248 (43.55%), Postives = 169/248 (68.15%), Query Frame = 0


Query: 1   MYGEGKKALKAFQDMELSGVLPDSVAFIAFIFACSHSGMVKEGLRFFDRMKTDYNLEPRM 60
           ++G G +A+  F++M+  GV P+ VAF+A + ACSH G+V E   +F+ M   Y L   +
Sbjct: 421 LHGHGHEAVSLFEEMKRQGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVYGLNQEL 480

Query: 61  EHYACVVDLLARSGLLAQAEEFILSMPMKPDASLWGALLSACRARGNTNIAQRVSKKILE 120
           EHYA V DLL R+G L +A  FI  M ++P  S+W  LLS+C    N  +A++V++KI  
Sbjct: 481 EHYAAVADLLGRAGKLEEAYNFISKMCVEPTGSVWSTLLSSCSVHKNLELAEKVAEKIFT 540

Query: 121 LNSDDTGYYVLVSNIYATLGKWDQVKTVRNSMKTKGLKKEPGSSWIEIQKRVYVFRTGDK 180
           ++S++ G YVL+ N+YA+ G+W ++  +R  M+ KGL+K+P  SWIE++ + + F +GD+
Sbjct: 541 VDSENMGAYVLMCNMYASNGRWKEMAKLRLRMRKKGLRKKPACSWIEMKNKTHGFVSGDR 600

Query: 181 SFEQYDKVKDLLEYLVRLMAKEGYVADLQFALHDVEEDDKRDMLCGHSERLAIAFGLLNT 240
           S    DK+ + L+ ++  M KEGYVAD    LHDV+E+ KR++L GHSERLA+AFG++NT
Sbjct: 601 SHPSMDKINEFLKAVMEQMEKEGYVADTSGVLHDVDEEHKRELLFGHSERLAVAFGIINT 660

Query: 241 KPGSPLLI 249
           +PG+ + +
Sbjct: 661 EPGTTIRV 668

[Close]

BLAST of CsGy3G009930 vs. Swiss-Prot
Match: sp|P0C899|PP271_ARATH (Putative pentatricopeptide repeat-containing protein At3g49142 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H77 PE=3 SV=1)

HSP 1 Score: 238.0 bits (606), Expect = 1.5e-61
Identity = 112/239 (46.86%), Postives = 162/239 (67.78%), Query Frame = 0


Query: 3   GEGKKALKAFQDMELSGVLPDSVAFIAFIFACSHSGMVKEGLRFFDRMKTDYNLEPRMEH 62
           G G  A+  F  ++ SG++PDS+AF+  + ACSH+G+++EG   F  M   Y + PR+EH
Sbjct: 389 GRGCDAVALFSKLQDSGLVPDSIAFVTTLAACSHAGLLEEGRSCFKLMTDHYKITPRLEH 448

Query: 63  YACVVDLLARSGLLAQAEEFILSMPMKPDASLWGALLSACRARGNTNIAQRVSKKILELN 122
            AC+VDLL R+G + +A  FI  M M+P+  +WGALL ACR   +T+I    + K+ +L 
Sbjct: 449 LACMVDLLGRAGKVKEAYRFIQDMSMEPNERVWGALLGACRVHSDTDIGLLAADKLFQLA 508

Query: 123 SDDTGYYVLVSNIYATLGKWDQVKTVRNSMKTKGLKKEPGSSWIEIQKRVYVFRTGDKSF 182
            + +GYYVL+SNIYA  G+W++V  +RN MK+KGLKK PG+S +E+ + ++ F  GD+S 
Sbjct: 509 PEQSGYYVLLSNIYAKAGRWEEVTNIRNIMKSKGLKKNPGASNVEVNRIIHTFLVGDRSH 568

Query: 183 EQYDKVKDLLEYLVRLMAKEGYVADLQFALHDVEEDDKRDMLCGHSERLAIAFGLLNTK 242
            Q D++   L+ LV+ M + GYV D + ALHDVEE+DK   L  HSE+LAI F L+NTK
Sbjct: 569 PQSDEIYRELDVLVKKMKELGYVPDSESALHDVEEEDKETHLAVHSEKLAIVFALMNTK 627

[Close]

BLAST of CsGy3G009930 vs. TrEMBL
Match: tr|A0A0A0L4F4|A0A0A0L4F4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G126920 PE=4 SV=1)

HSP 1 Score: 500.0 bits (1286), Expect = 4.2e-138
Identity = 248/252 (98.41%), Postives = 249/252 (98.81%), Query Frame = 0


Query: 1   MYGEGKKALKAFQDMELSGVLPDSVAFIAFIFACSHSGMVKEGLRFFDRMKTDYNLEPRM 60
           MYGEGKKALKAFQDMELSGVLPDSVAFIAFIFACSHSGMVKEGLRFFDRMKTDYNLEPRM
Sbjct: 601 MYGEGKKALKAFQDMELSGVLPDSVAFIAFIFACSHSGMVKEGLRFFDRMKTDYNLEPRM 660

Query: 61  EHYACVVDLLARSGLLAQAEEFILSMPMKPDASLWGALLSACRARGNTNIAQRVSKKILE 120
           EHYACVVDLLARSGLLAQAEEFILSMPMKPDASLWGALLSACRARGNTNIAQRVSKKILE
Sbjct: 661 EHYACVVDLLARSGLLAQAEEFILSMPMKPDASLWGALLSACRARGNTNIAQRVSKKILE 720

Query: 121 LNSDDTGYYVLVSNIYATLGKWDQVKTVRNSMKTKGLKKEPGSSWIEIQKRVYVFRTGDK 180
           LNSDDTGYYVLVSNIYATLGKWDQVKTVRNSMKTKGLKKEPGSSWIEIQKRVYVFRTGDK
Sbjct: 721 LNSDDTGYYVLVSNIYATLGKWDQVKTVRNSMKTKGLKKEPGSSWIEIQKRVYVFRTGDK 780

Query: 181 SFEQYDKVKDLLEYLVRLMAKEGYVADLQFALHDVEEDDKRDMLCGHSERLAIAFGLLNT 240
           SFEQYDKVKDLLEYLVRLMAKEGYVADLQFALHDVEEDDKRDMLCGHSERLAIAFGLLNT
Sbjct: 781 SFEQYDKVKDLLEYLVRLMAKEGYVADLQFALHDVEEDDKRDMLCGHSERLAIAFGLLNT 840

Query: 241 KPGSPLLIFPTL 253
           KPGSPLL+   L
Sbjct: 841 KPGSPLLVMKNL 852

[Close]

BLAST of CsGy3G009930 vs. TrEMBL
Match: tr|A0A1S4DSV8|A0A1S4DSV8_CUCME (pentatricopeptide repeat-containing protein At3g03580 OS=Cucumis melo OX=3656 GN=LOC103483385 PE=4 SV=1)

HSP 1 Score: 483.0 bits (1242), Expect = 5.3e-133
Identity = 240/252 (95.24%), Postives = 243/252 (96.43%), Query Frame = 0


Query: 1   MYGEGKKALKAFQDMELSGVLPDSVAFIAFIFACSHSGMVKEGLRFFDRMKTDYNLEPRM 60
           MYGEGKKALKAFQDMELSGV PDSVAFIAFIFACSHSGMV EGLRFFDRMKTDYNLEPRM
Sbjct: 601 MYGEGKKALKAFQDMELSGVFPDSVAFIAFIFACSHSGMVNEGLRFFDRMKTDYNLEPRM 660

Query: 61  EHYACVVDLLARSGLLAQAEEFILSMPMKPDASLWGALLSACRARGNTNIAQRVSKKILE 120
           EHYACVVDLLARSGLLAQAEEFILSMPMKPDASLWGALLSACRA GNTNIAQRVSKKILE
Sbjct: 661 EHYACVVDLLARSGLLAQAEEFILSMPMKPDASLWGALLSACRASGNTNIAQRVSKKILE 720

Query: 121 LNSDDTGYYVLVSNIYATLGKWDQVKTVRNSMKTKGLKKEPGSSWIEIQKRVYVFRTGDK 180
           LNSD+TGYYVLVSNIYATLGKWDQVK VRNSMKTKGLKK+PGSSWIEIQKRVYVFRTGDK
Sbjct: 721 LNSDNTGYYVLVSNIYATLGKWDQVKMVRNSMKTKGLKKDPGSSWIEIQKRVYVFRTGDK 780

Query: 181 SFEQYDKVKDLLEYLVRLMAKEGYVADLQFALHDVEEDDKRDMLCGHSERLAIAFGLLNT 240
           SFEQYDKVKDLLEYLV LMAKEGYVADLQFALHDVEEDDKRDMLCGHSERLAIAFGLLNT
Sbjct: 781 SFEQYDKVKDLLEYLVGLMAKEGYVADLQFALHDVEEDDKRDMLCGHSERLAIAFGLLNT 840

Query: 241 KPGSPLLIFPTL 253
           KPGS LL+   L
Sbjct: 841 KPGSSLLVMKNL 852

[Close]

BLAST of CsGy3G009930 vs. TrEMBL
Match: tr|A0A061F0B0|A0A061F0B0_THECC (Tetratricopeptide repeat (TPR)-like superfamily protein, putative OS=Theobroma cacao OX=3641 GN=TCM_025711 PE=4 SV=1)

HSP 1 Score: 390.2 bits (1001), Expect = 4.7e-105
Identity = 183/252 (72.62%), Postives = 221/252 (87.70%), Query Frame = 0


Query: 1   MYGEGKKALKAFQDMELSGVLPDSVAFIAFIFACSHSGMVKEGLRFFDRMKTDYNLEPRM 60
           MYGEGKKAL+AF +ME +GV+PD VAF+A I+ACSHSG+V+EGL  FDRMK  YNLEPR+
Sbjct: 595 MYGEGKKALRAFAEMEATGVIPDHVAFVAIIYACSHSGLVEEGLASFDRMKKVYNLEPRI 654

Query: 61  EHYACVVDLLARSGLLAQAEEFILSMPMKPDASLWGALLSACRARGNTNIAQRVSKKILE 120
           EHYACVVDLL+RSGL+++AEEFI SMPMKPDAS+WG+LLSACR+ GN  +AQRVS++ILE
Sbjct: 655 EHYACVVDLLSRSGLISKAEEFIYSMPMKPDASIWGSLLSACRSCGNIEVAQRVSERILE 714

Query: 121 LNSDDTGYYVLVSNIYATLGKWDQVKTVRNSMKTKGLKKEPGSSWIEIQKRVYVFRTGDK 180
           LNS+DTGYYVL SN+YA LGKWDQV+ +R S+K +GLKK+PG SWIEI++R+YVF TGDK
Sbjct: 715 LNSNDTGYYVLASNVYAILGKWDQVRMIRKSIKARGLKKDPGCSWIEIKRRLYVFGTGDK 774

Query: 181 SFEQYDKVKDLLEYLVRLMAKEGYVADLQFALHDVEEDDKRDMLCGHSERLAIAFGLLNT 240
            FEQ+D+V  LL  +  LMAKEGYVADL++ LHD+EED+KRD+LCGHSERLAIAFGLLNT
Sbjct: 775 FFEQFDEVTKLLGIISGLMAKEGYVADLRYVLHDIEEDEKRDLLCGHSERLAIAFGLLNT 834

Query: 241 KPGSPLLIFPTL 253
           KPG+PL I   L
Sbjct: 835 KPGTPLHIMKNL 846

[Close]

BLAST of CsGy3G009930 vs. TrEMBL
Match: tr|F6I5C3|F6I5C3_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_15s0024g01510 PE=4 SV=1)

HSP 1 Score: 384.0 bits (985), Expect = 3.4e-103
Identity = 177/252 (70.24%), Postives = 219/252 (86.90%), Query Frame = 0


Query: 1   MYGEGKKALKAFQDMELSGVLPDSVAFIAFIFACSHSGMVKEGLRFFDRMKTDYNLEPRM 60
           MYGEGKKA++AF +ME +G++PD VAF+A IFACSHSG+V+EGL +F RMK DY +EPR+
Sbjct: 595 MYGEGKKAVRAFGEMEAAGIVPDHVAFVAIIFACSHSGLVEEGLNYFHRMKKDYKIEPRI 654

Query: 61  EHYACVVDLLARSGLLAQAEEFILSMPMKPDASLWGALLSACRARGNTNIAQRVSKKILE 120
           EHYACVVDLL+RS LL +AE+FILSMP+KPD+S+WGALLSACR  G+T IA+RVS++I+E
Sbjct: 655 EHYACVVDLLSRSALLDKAEDFILSMPLKPDSSIWGALLSACRMSGDTEIAERVSERIIE 714

Query: 121 LNSDDTGYYVLVSNIYATLGKWDQVKTVRNSMKTKGLKKEPGSSWIEIQKRVYVFRTGDK 180
           LN DDTGYYVLVSNIYA LGKWDQV+++R S+K +GLKK+PG SW+EIQ +VYVF TG K
Sbjct: 715 LNPDDTGYYVLVSNIYAALGKWDQVRSIRKSIKARGLKKDPGCSWMEIQNKVYVFGTGTK 774

Query: 181 SFEQYDKVKDLLEYLVRLMAKEGYVADLQFALHDVEEDDKRDMLCGHSERLAIAFGLLNT 240
            FEQ+++V  LL  L  LMAKEGY+A+LQF LHD++ED+KRD+LCGHSERLAIAFGLLNT
Sbjct: 775 FFEQFEEVNKLLGMLAGLMAKEGYIANLQFVLHDIDEDEKRDILCGHSERLAIAFGLLNT 834

Query: 241 KPGSPLLIFPTL 253
           KPG+PL +   L
Sbjct: 835 KPGTPLQVMKNL 846

[Close]

BLAST of CsGy3G009930 vs. TrEMBL
Match: tr|A0A2R6QPU4|A0A2R6QPU4_ACTCH (Pentatricopeptide repeat-containing protein OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc16170 PE=4 SV=1)

HSP 1 Score: 383.6 bits (984), Expect = 4.4e-103
Identity = 173/252 (68.65%), Postives = 219/252 (86.90%), Query Frame = 0


Query: 1   MYGEGKKALKAFQDMELSGVLPDSVAFIAFIFACSHSGMVKEGLRFFDRMKTDYNLEPRM 60
           MYGEG+KA++AF++ME +G  PD +AF+A I+ACSHSG+V +G  +FDRM+ DYN+EPR+
Sbjct: 597 MYGEGRKAVRAFEEMEAAGFAPDHIAFVAIIYACSHSGLVDKGRAYFDRMRKDYNIEPRI 656

Query: 61  EHYACVVDLLARSGLLAQAEEFILSMPMKPDASLWGALLSACRARGNTNIAQRVSKKILE 120
           EHYAC+VDLL+RSGLL++AEEFILSMP+KPDAS+WGALLS CRA G+  +A+R S+ ++E
Sbjct: 657 EHYACIVDLLSRSGLLSEAEEFILSMPLKPDASIWGALLSGCRASGDIEVAERASEHVIE 716

Query: 121 LNSDDTGYYVLVSNIYATLGKWDQVKTVRNSMKTKGLKKEPGSSWIEIQKRVYVFRTGDK 180
           LNSD+TGYYVLVSN+YA LGKWD+V+T+R S++ KGLKK+PG SW+EI+ RVYVF TGD+
Sbjct: 717 LNSDNTGYYVLVSNVYAALGKWDKVRTIRKSLRNKGLKKDPGCSWMEIRNRVYVFGTGDR 776

Query: 181 SFEQYDKVKDLLEYLVRLMAKEGYVADLQFALHDVEEDDKRDMLCGHSERLAIAFGLLNT 240
            FEQY++V   L  L  L+AKEGYVADLQF+LHDVEED+KRD+LCGHSERLAIAFGLLNT
Sbjct: 777 FFEQYEEVNRFLGILAGLIAKEGYVADLQFSLHDVEEDEKRDLLCGHSERLAIAFGLLNT 836

Query: 241 KPGSPLLIFPTL 253
           KPG+PL +   L
Sbjct: 837 KPGTPLQVMKNL 848

The following BLAST results are available for this feature:

BLAST of CsGy3G009930 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004134352.2	6.3e-138	98.41	PREDICTED: pentatricopeptide repeat-containing protein At3g03580 [Cucumis sativu...	[more]
XP_016899076.1	8.0e-133	95.24	PREDICTED: pentatricopeptide repeat-containing protein At3g03580 [Cucumis melo]	[more]
XP_023540929.1	1.4e-124	88.49	pentatricopeptide repeat-containing protein At3g03580 [Cucurbita pepo subsp. pep...	[more]
XP_022949990.1	4.0e-124	88.10	pentatricopeptide repeat-containing protein At3g03580 [Cucurbita moschata] >XP_0...	[more]
XP_022146916.1	5.6e-118	90.21	pentatricopeptide repeat-containing protein At3g03580 [Momordica charantia]	[more]

BLAST of CsGy3G009930 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G03580.1	5.4e-83	57.31	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT1G20230.1	2.3e-65	41.35	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT4G18750.1	3.9e-65	41.24	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT3G23330.1	6.2e-63	43.55	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT3G49142.1	8.1e-63	46.86	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

BLAST of CsGy3G009930 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9SS60\|PP210_ARATH	9.8e-82	57.31	Pentatricopeptide repeat-containing protein At3g03580 OS=Arabidopsis thaliana OX...	[more]
sp\|Q9LNU6\|PPR53_ARATH	4.1e-64	41.35	Pentatricopeptide repeat-containing protein At1g20230 OS=Arabidopsis thaliana OX...	[more]
sp\|Q9SN39\|PP320_ARATH	7.0e-64	41.24	Pentatricopeptide repeat-containing protein DOT4, chloroplastic OS=Arabidopsis t...	[more]
sp\|Q9LW63\|PP251_ARATH	1.1e-61	43.55	Putative pentatricopeptide repeat-containing protein At3g23330 OS=Arabidopsis th...	[more]
sp\|P0C899\|PP271_ARATH	1.5e-61	46.86	Putative pentatricopeptide repeat-containing protein At3g49142 OS=Arabidopsis th...	[more]

BLAST of CsGy3G009930 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L4F4\|A0A0A0L4F4_CUCSA	4.2e-138	98.41	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G126920 PE=4 SV=1	[more]
tr\|A0A1S4DSV8\|A0A1S4DSV8_CUCME	5.3e-133	95.24	pentatricopeptide repeat-containing protein At3g03580 OS=Cucumis melo OX=3656 GN...	[more]
tr\|A0A061F0B0\|A0A061F0B0_THECC	4.7e-105	72.62	Tetratricopeptide repeat (TPR)-like superfamily protein, putative OS=Theobroma c...	[more]
tr\|F6I5C3\|F6I5C3_VITVI	3.4e-103	70.24	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_15s0024g01510 PE=4 SV=...	[more]
tr\|A0A2R6QPU4\|A0A2R6QPU4_ACTCH	4.4e-103	68.65	Pentatricopeptide repeat-containing protein OS=Actinidia chinensis var. chinensi...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding
GO:0008270	zinc ion binding

Vocabulary: **INTERPRO**
Term	Definition
IPR011990	TPR-like_helical_dom_sf
IPR002885	Pentatricopeptide_repeat
IPR032867	DYW_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0090305	nucleic acid phosphodiester bond hydrolysis
biological_process	GO:0009451	RNA modification
cellular_component	GO:0043231	intracellular membrane-bounded organelle
molecular_function	GO:0004519	endonuclease activity
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy3G009930.1	CsGy3G009930.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR032867	DYW domain	PFAM	PF14432	DYW_deaminase	coord: 161..248 e-value: 2.6E-20 score: 72.5
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 26..52 e-value: 0.0064 score: 16.6
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	G3DSA:1.25.40.10		coord: 2..210 e-value: 1.8E-29 score: 105.0
None	No IPR available	PANTHER	PTHR24015:SF567	SUBFAMILY NOT NAMED	coord: 1..215
None	No IPR available	PANTHER	PTHR24015	FAMILY NOT NAMED	coord: 1..215
None	No IPR available	PROSITE	PS51257	PROKAR_LIPOPROTEIN	coord: 1..34 score: 6.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy3G009930	Csa3G126930	Cucumber (Chinese Long) v2	cgybcuB109

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy3G009930	Cucumber (Chinese Long) v3	cgybcucB117
CsGy3G009930	Cucumber (Chinese Long) v3	cgybcucB142
CsGy3G009930	Watermelon (97103) v2	cgybwmbB196
CsGy3G009930	Watermelon (97103) v2	cgybwmbB218
CsGy3G009930	Wax gourd	cgybwgoB247
CsGy3G009930	Wax gourd	cgybwgoB258
CsGy3G009930	Cucumber (Gy14) v2	cgybcgybB101
CsGy3G009930	Cucurbita maxima (Rimu)	cgybcmaB278
CsGy3G009930	Cucurbita maxima (Rimu)	cgybcmaB318
CsGy3G009930	Cucurbita maxima (Rimu)	cgybcmaB345
CsGy3G009930	Cucurbita maxima (Rimu)	cgybcmaB427
CsGy3G009930	Cucurbita maxima (Rimu)	cgybcmaB462
CsGy3G009930	Cucurbita moschata (Rifu)	cgybcmoB290
CsGy3G009930	Cucurbita moschata (Rifu)	cgybcmoB317
CsGy3G009930	Cucurbita moschata (Rifu)	cgybcmoB401
CsGy3G009930	Cucurbita moschata (Rifu)	cgybcmoB428
CsGy3G009930	Cucurbita pepo (Zucchini)	cgybcpeB304
CsGy3G009930	Cucurbita pepo (Zucchini)	cgybcpeB351
CsGy3G009930	Cucurbita pepo (Zucchini)	cgybcpeB406
CsGy3G009930	Cucurbita pepo (Zucchini)	cgybcpeB454
CsGy3G009930	Cucumber (Chinese Long) v2	cgybcuB138
CsGy3G009930	Bottle gourd (USVL1VR-Ls)	cgyblsiB140
CsGy3G009930	Bottle gourd (USVL1VR-Ls)	cgyblsiB196
CsGy3G009930	Melon (DHL92) v3.5.1	cgybmeB152
CsGy3G009930	Melon (DHL92) v3.5.1	cgybmeB200
CsGy3G009930	Melon (DHL92) v3.6.1	cgybmedB151
CsGy3G009930	Melon (DHL92) v3.6.1	cgybmedB201
CsGy3G009930	Watermelon (Charleston Gray)	cgybwcgB203
CsGy3G009930	Watermelon (Charleston Gray)	cgybwcgB226
CsGy3G009930	Watermelon (97103) v1	cgybwmB217
CsGy3G009930	Watermelon (97103) v1	cgybwmB259
CsGy3G009930	Wild cucumber (PI 183967)	cgybcpiB110
CsGy3G009930	Wild cucumber (PI 183967)	cgybcpiB141
CsGy3G009930	Silver-seed gourd	carcgybB0245
CsGy3G009930	Silver-seed gourd	carcgybB0617
CsGy3G009930	Silver-seed gourd	carcgybB0948
CsGy3G009930	Silver-seed gourd	carcgybB1057