CsGy3G007400 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy3G007400
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Zinc finger family protein
Location	Chr3 : 6426919 .. 6427104 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGAAAAATGAAGAAGAAAAGAAAATTGTGAATAATGAGAGTGTGGAGGAAGAAGCAGAGAGTAAAGTGAAATTAGCAAAACTTAGTGAGCTAAAGGATATGAACATGAGTGCAGGGAATTCTTCGCCATGGTTGCAGGTGGGGATTGCTTCAACAACTCATGTCGTCACACCTGATCCTTGA

mRNA sequence

ATGAGGAAAAATGAAGAAGAAAAGAAAATTGTGAATAATGAGAGTGTGGAGGAAGAAGCAGAGAGTAAAGTGAAATTAGCAAAACTTAGTGAGCTAAAGGATATGAACATGAGTGCAGGGAATTCTTCGCCATGGTTGCAGGTGGGGATTGCTTCAACAACTCATGTCGTCACACCTGATCCTTGA

Coding sequence (CDS)

ATGAGGAAAAATGAAGAAGAAAAGAAAATTGTGAATAATGAGAGTGTGGAGGAAGAAGCAGAGAGTAAAGTGAAATTAGCAAAACTTAGTGAGCTAAAGGATATGAACATGAGTGCAGGGAATTCTTCGCCATGGTTGCAGGTGGGGATTGCTTCAACAACTCATGTCGTCACACCTGATCCTTGA

Protein sequence

MRKNEEEKKIVNNESVEEEAESKVKLAKLSELKDMNMSAGNSSPWLQVGIASTTHVVTPDP

Homology

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BLAST of CsGy3G007400 vs. NCBI nr
Match: XP_008437784.1 (PREDICTED: uncharacterized protein LOC103483116 [Cucumis melo])

HSP 1 Score: 82.4 bits (202), Expect = 5.8e-13
Identity = 41/41 (100.00%), Postives = 41/41 (100.00%), Query Frame = 0


Query: 21  ESKVKLAKLSELKDMNMSAGNSSPWLQVGIASTTHVVTPDP 62
           ESKVKLAKLSELKDMNMSAGNSSPWLQVGIASTTHVVTPDP
Sbjct: 522 ESKVKLAKLSELKDMNMSAGNSSPWLQVGIASTTHVVTPDP 562

[Close]

BLAST of CsGy3G007400 vs. NCBI nr
Match: XP_011650634.1 (PREDICTED: uncharacterized protein LOC101222211 [Cucumis sativus] >KGN56355.1 hypothetical protein Csa_3G117410 [Cucumis sativus])

HSP 1 Score: 82.4 bits (202), Expect = 5.8e-13
Identity = 41/41 (100.00%), Postives = 41/41 (100.00%), Query Frame = 0


Query: 21  ESKVKLAKLSELKDMNMSAGNSSPWLQVGIASTTHVVTPDP 62
           ESKVKLAKLSELKDMNMSAGNSSPWLQVGIASTTHVVTPDP
Sbjct: 524 ESKVKLAKLSELKDMNMSAGNSSPWLQVGIASTTHVVTPDP 564

[Close]

BLAST of CsGy3G007400 vs. NCBI nr
Match: XP_023885535.1 (zinc finger protein ZAT9-like [Quercus suber])

HSP 1 Score: 64.7 bits (156), Expect = 1.2e-07
Identity = 35/43 (81.40%), Postives = 40/43 (93.02%), Query Frame = 0


Query: 14  ESVEEEAESKVKLAKLSELKDMNMSAGNSSPWLQVGIASTTHV 57
           ++VE+EA+SKVKLAKLSELKDMNMS G+SSPWLQVGI STT V
Sbjct: 472 QNVEDEADSKVKLAKLSELKDMNMS-GSSSPWLQVGIGSTTDV 513

[Close]

BLAST of CsGy3G007400 vs. NCBI nr
Match: XP_007052174.1 (PREDICTED: zinc finger protein ZAT1 [Theobroma cacao] >EOX96331.1 C2H2-type zinc finger family protein [Theobroma cacao])

HSP 1 Score: 63.2 bits (152), Expect = 3.6e-07
Identity = 33/42 (78.57%), Postives = 38/42 (90.48%), Query Frame = 0


Query: 15  SVEEEAESKVKLAKLSELKDMNMSAGNSSPWLQVGIASTTHV 57
           + ++EA+SKVKLAKLSELKD+NMS G SSPWLQVGI STTHV
Sbjct: 433 NADDEADSKVKLAKLSELKDINMS-GGSSPWLQVGIGSTTHV 473

[Close]

BLAST of CsGy3G007400 vs. NCBI nr
Match: XP_006445329.1 (zinc finger protein ZAT1 [Citrus clementina] >XP_006490849.1 zinc finger protein ZAT1 [Citrus sinensis] >ESR58569.1 hypothetical protein CICLE_v10024047mg [Citrus clementina] >KDO85695.1 hypothetical protein CISIN_1g040791mg [Citrus sinensis])

HSP 1 Score: 63.2 bits (152), Expect = 3.6e-07
Identity = 33/46 (71.74%), Postives = 40/46 (86.96%), Query Frame = 0


Query: 11  VNNESVEEEAESKVKLAKLSELKDMNMSAGNSSPWLQVGIASTTHV 57
           + N +V++EA+SKVKLAKLSE+KDMN+S G SSPWLQVGI STT V
Sbjct: 417 IQNNNVDDEADSKVKLAKLSEIKDMNIS-GGSSPWLQVGIGSTTDV 461

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BLAST of CsGy3G007400 vs. TrEMBL
Match: tr|A0A1S3AVE6|A0A1S3AVE6_CUCME (uncharacterized protein LOC103483116 OS=Cucumis melo OX=3656 GN=LOC103483116 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 3.8e-13
Identity = 41/41 (100.00%), Postives = 41/41 (100.00%), Query Frame = 0


Query: 21  ESKVKLAKLSELKDMNMSAGNSSPWLQVGIASTTHVVTPDP 62
           ESKVKLAKLSELKDMNMSAGNSSPWLQVGIASTTHVVTPDP
Sbjct: 522 ESKVKLAKLSELKDMNMSAGNSSPWLQVGIASTTHVVTPDP 562

[Close]

BLAST of CsGy3G007400 vs. TrEMBL
Match: tr|A0A0A0L2Y2|A0A0A0L2Y2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G117410 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 3.8e-13
Identity = 41/41 (100.00%), Postives = 41/41 (100.00%), Query Frame = 0


Query: 21  ESKVKLAKLSELKDMNMSAGNSSPWLQVGIASTTHVVTPDP 62
           ESKVKLAKLSELKDMNMSAGNSSPWLQVGIASTTHVVTPDP
Sbjct: 524 ESKVKLAKLSELKDMNMSAGNSSPWLQVGIASTTHVVTPDP 564

[Close]

BLAST of CsGy3G007400 vs. TrEMBL
Match: tr|V4VYM5|V4VYM5_9ROSI (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10024047mg PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 2.4e-07
Identity = 33/46 (71.74%), Postives = 40/46 (86.96%), Query Frame = 0


Query: 11  VNNESVEEEAESKVKLAKLSELKDMNMSAGNSSPWLQVGIASTTHV 57
           + N +V++EA+SKVKLAKLSE+KDMN+S G SSPWLQVGI STT V
Sbjct: 417 IQNNNVDDEADSKVKLAKLSEIKDMNIS-GGSSPWLQVGIGSTTDV 461

[Close]

BLAST of CsGy3G007400 vs. TrEMBL
Match: tr|A0A2H5NP13|A0A2H5NP13_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_062950 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 2.4e-07
Identity = 33/46 (71.74%), Postives = 40/46 (86.96%), Query Frame = 0


Query: 11  VNNESVEEEAESKVKLAKLSELKDMNMSAGNSSPWLQVGIASTTHV 57
           + N +V++EA+SKVKLAKLSE+KDMN+S G SSPWLQVGI STT V
Sbjct: 417 IQNNNVDDEADSKVKLAKLSEIKDMNIS-GGSSPWLQVGIGSTTDV 461

[Close]

BLAST of CsGy3G007400 vs. TrEMBL
Match: tr|A0A061DW89|A0A061DW89_THECC (C2H2-type zinc finger family protein OS=Theobroma cacao OX=3641 GN=TCM_005602 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 2.4e-07
Identity = 33/42 (78.57%), Postives = 38/42 (90.48%), Query Frame = 0


Query: 15  SVEEEAESKVKLAKLSELKDMNMSAGNSSPWLQVGIASTTHV 57
           + ++EA+SKVKLAKLSELKD+NMS G SSPWLQVGI STTHV
Sbjct: 433 NADDEADSKVKLAKLSELKDINMS-GGSSPWLQVGIGSTTHV 473

The following BLAST results are available for this feature:

BLAST of CsGy3G007400 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008437784.1	5.8e-13	100.00	PREDICTED: uncharacterized protein LOC103483116 [Cucumis melo]	[more]
XP_011650634.1	5.8e-13	100.00	PREDICTED: uncharacterized protein LOC101222211 [Cucumis sativus] >KGN56355.1 hy...	[more]
XP_023885535.1	1.2e-07	81.40	zinc finger protein ZAT9-like [Quercus suber]	[more]
XP_007052174.1	3.6e-07	78.57	PREDICTED: zinc finger protein ZAT1 [Theobroma cacao] >EOX96331.1 C2H2-type zinc...	[more]
XP_006445329.1	3.6e-07	71.74	zinc finger protein ZAT1 [Citrus clementina] >XP_006490849.1 zinc finger protein...	[more]

BLAST of CsGy3G007400 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsGy3G007400 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy3G007400 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3AVE6\|A0A1S3AVE6_CUCME	3.8e-13	100.00	uncharacterized protein LOC103483116 OS=Cucumis melo OX=3656 GN=LOC103483116 PE=...	[more]
tr\|A0A0A0L2Y2\|A0A0A0L2Y2_CUCSA	3.8e-13	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G117410 PE=4 SV=1	[more]
tr\|V4VYM5\|V4VYM5_9ROSI	2.4e-07	71.74	Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10024047mg PE=4 ...	[more]
tr\|A0A2H5NP13\|A0A2H5NP13_CITUN	2.4e-07	71.74	Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_062950 PE=4 SV=1	[more]
tr\|A0A061DW89\|A0A061DW89_THECC	2.4e-07	78.57	C2H2-type zinc finger family protein OS=Theobroma cacao OX=3641 GN=TCM_005602 PE...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy3G007400.1	CsGy3G007400.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 1..23
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy3G007400	Cla021090	Watermelon (97103) v1	cgybwmB217
CsGy3G007400	Csa3G117410	Cucumber (Chinese Long) v2	cgybcuB109
CsGy3G007400	MELO3C005961	Melon (DHL92) v3.5.1	cgybmeB200
CsGy3G007400	ClCG05G000230	Watermelon (Charleston Gray)	cgybwcgB203
CsGy3G007400	CSPI03G07260	Wild cucumber (PI 183967)	cgybcpiB110
CsGy3G007400	Lsi05G022060	Bottle gourd (USVL1VR-Ls)	cgyblsiB196
CsGy3G007400	MELO3C005961.2	Melon (DHL92) v3.6.1	cgybmedB201
CsGy3G007400	CsaV3_3G007380	Cucumber (Chinese Long) v3	cgybcucB117
CsGy3G007400	Bhi01G000436	Wax gourd	cgybwgoB272
CsGy3G007400	Carg24178	Silver-seed gourd	carcgybB0105

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy3G007400	Cucurbita maxima (Rimu)	cgybcmaB280
CsGy3G007400	Cucurbita maxima (Rimu)	cgybcmaB318
CsGy3G007400	Cucurbita maxima (Rimu)	cgybcmaB430
CsGy3G007400	Cucurbita moschata (Rifu)	cgybcmoB290
CsGy3G007400	Cucurbita moschata (Rifu)	cgybcmoB401
CsGy3G007400	Cucurbita pepo (Zucchini)	cgybcpeB406
CsGy3G007400	Cucurbita pepo (Zucchini)	cgybcpeB454
CsGy3G007400	Silver-seed gourd	carcgybB0143
CsGy3G007400	Watermelon (97103) v2	cgybwmbB196