CsGy2G026550 (gene) Cucumber (Gy14) v2

NameCsGy2G026550
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
DescriptionABC transporter B family member 19-like
LocationChr2 : 34142700 .. 34143057 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTCATGAAGAGAAAAGCCAAGAAGATCATCATCTTGGCTCCTCCTCCACTGATGGCCCAGCTTTTCCATTTCACAAGCTGCTTGTTTATGCTGATGCTTTGGATTGGGTTTTAATGGGTTTAGGGACTTTTGGTTCTGTCATTCATGGCATGGCTCAGCCAATTGGGTATCTTTTGCTTGGCAAAGCACTTGATGCATTTGGAAATAATATTGATGATATTGATGCAATGGTTGATGCACTCTATGAGGTATATTTATTAATTCTATTTGTGCCTACTTTTTATTTATTTATTTATTGTTTTTACTTCATGATATTGTTTTTTTTACAACATATAGTTTTGGAATATTATATAA

mRNA sequence

ATGATTCATGAAGAGAAAAGCCAAGAAGATCATCATCTTGGCTCCTCCTCCACTGATGGCCCAGCTTTTCCATTTCACAAGCTGCTTGTTTATGCTGATGCTTTGGATTGGGTTTTAATGGGTTTAGGGACTTTTGGTTCTGTCATTCATGGCATGGCTCAGCCAATTGGGTATCTTTTGCTTGGCAAAGCACTTGATGCATTTGGAAATAATATTGATGATATTGATGCAATGGTTGATGCACTCTATGAGTTTTGGAATATTATATAA

Coding sequence (CDS)

ATGATTCATGAAGAGAAAAGCCAAGAAGATCATCATCTTGGCTCCTCCTCCACTGATGGCCCAGCTTTTCCATTTCACAAGCTGCTTGTTTATGCTGATGCTTTGGATTGGGTTTTAATGGGTTTAGGGACTTTTGGTTCTGTCATTCATGGCATGGCTCAGCCAATTGGGTATCTTTTGCTTGGCAAAGCACTTGATGCATTTGGAAATAATATTGATGATATTGATGCAATGGTTGATGCACTCTATGAGTTTTGGAATATTATATAA

Protein sequence

MIHEEKSQEDHHLGSSSTDGPAFPFHKLLVYADALDWVLMGLGTFGSVIHGMAQPIGYLLLGKALDAFGNNIDDIDAMVDALYEFWNII
BLAST of CsGy2G026550 vs. NCBI nr
Match: KGN63321.1 (hypothetical protein Csa_2G428930 [Cucumis sativus])

HSP 1 Score: 176.8 bits (447), Expect = 3.3e-41
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 0

Query: 1  MIHEEKSQEDHHLGSSSTDGPAFPFHKLLVYADALDWVLMGLGTFGSVIHGMAQPIGYLL 60
          MIHEEKSQEDHHLGSSSTDGPAFPFHKLLVYADALDWVLMGLGTFGSVIHGMAQPIGYLL
Sbjct: 1  MIHEEKSQEDHHLGSSSTDGPAFPFHKLLVYADALDWVLMGLGTFGSVIHGMAQPIGYLL 60

Query: 61 LGKALDAFGNNIDDIDAMVDALYE 85
          LGKALDAFGNNIDDIDAMVDALYE
Sbjct: 61 LGKALDAFGNNIDDIDAMVDALYE 84

BLAST of CsGy2G026550 vs. NCBI nr
Match: XP_016902931.1 (PREDICTED: LOW QUALITY PROTEIN: ABC transporter B family member 19-like [Cucumis melo])

HSP 1 Score: 153.3 bits (386), Expect = 3.9e-34
Identity = 77/84 (91.67%), Postives = 78/84 (92.86%), Query Frame = 0

Query: 1  MIHEEKSQEDHHLGSSSTDGPAFPFHKLLVYADALDWVLMGLGTFGSVIHGMAQPIGYLL 60
          MIHEEKSQE +HLGSSS DGP FPFHKLLVYADA DWVLMGLGTFGS IHGMAQPIGYLL
Sbjct: 1  MIHEEKSQE-YHLGSSSIDGP-FPFHKLLVYADAFDWVLMGLGTFGSAIHGMAQPIGYLL 60

Query: 61 LGKALDAFGNNIDDIDAMVDALYE 85
          LGKALDAFGNNI DIDAMVDALYE
Sbjct: 61 LGKALDAFGNNIGDIDAMVDALYE 82

BLAST of CsGy2G026550 vs. NCBI nr
Match: XP_022986167.1 (ABC transporter B family member 19-like [Cucurbita maxima])

HSP 1 Score: 132.5 bits (332), Expect = 7.1e-28
Identity = 67/84 (79.76%), Postives = 70/84 (83.33%), Query Frame = 0

Query: 1  MIHEEKSQEDHHLGSSSTDGPAFPFHKLLVYADALDWVLMGLGTFGSVIHGMAQPIGYLL 60
          M HEEK QED     +S D P  PFHKLL YADALDWVLM LGT GSV+HGMAQPIGYLL
Sbjct: 1  MTHEEKRQED-----TSIDDP-LPFHKLLGYADALDWVLMALGTLGSVVHGMAQPIGYLL 60

Query: 61 LGKALDAFGNNIDDIDAMVDALYE 85
          LGKALDAFGNNIDD+DAMVDALYE
Sbjct: 61 LGKALDAFGNNIDDLDAMVDALYE 78

BLAST of CsGy2G026550 vs. NCBI nr
Match: XP_023513249.1 (LOW QUALITY PROTEIN: ABC transporter B family member 13-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 131.3 bits (329), Expect = 1.6e-27
Identity = 67/86 (77.91%), Postives = 71/86 (82.56%), Query Frame = 0

Query: 1  MIHEEKSQEDHHLGSSSTDGPAFPFHKLLVYADALDWVLMGLGTFGSVIHGMAQPIGYLL 60
          M HEEK QED     +S D  A PFHKLL YADALDWVLM LGT GSV+HGMAQPIGYLL
Sbjct: 1  MTHEEKRQED-----TSID-DALPFHKLLGYADALDWVLMALGTLGSVVHGMAQPIGYLL 60

Query: 61 LGKALDAFGNNIDDIDAMVDALYEFW 87
          LGKALDAFGNNIDD+DAMVDALYE +
Sbjct: 61 LGKALDAFGNNIDDLDAMVDALYEVY 80

BLAST of CsGy2G026550 vs. NCBI nr
Match: KGN63319.1 (hypothetical protein Csa_2G428910 [Cucumis sativus])

HSP 1 Score: 124.4 bits (311), Expect = 1.9e-25
Identity = 60/84 (71.43%), Postives = 71/84 (84.52%), Query Frame = 0

Query: 1  MIHEEKSQEDHHLGSSSTDGPAFPFHKLLVYADALDWVLMGLGTFGSVIHGMAQPIGYLL 60
          M +EEK+QE++    S+T   A PFHKLL Y D+LDWVLMGLGTFGS++HGMAQPIGYLL
Sbjct: 1  MSYEEKNQEEN---GSTTRDDALPFHKLLSYGDSLDWVLMGLGTFGSLLHGMAQPIGYLL 60

Query: 61 LGKALDAFGNNIDDIDAMVDALYE 85
          LGKAL+AFGNNI D+DAMV ALY+
Sbjct: 61 LGKALNAFGNNITDLDAMVHALYQ 81

BLAST of CsGy2G026550 vs. TAIR10
Match: AT3G28860.1 (ATP binding cassette subfamily B19)

HSP 1 Score: 57.8 bits (138), Expect = 4.0e-09
Identity = 23/58 (39.66%), Postives = 39/58 (67.24%), Query Frame = 0

Query: 22 AFPFHKLLVYADALDWVLMGLGTFGSVIHGMAQPIGYLLLGKALDAFGNNIDDIDAMV 80
          + PF KL  +AD  D++LM +G+ G+++HG + P+ +LL G+ ++ FG N  D+  MV
Sbjct: 23 SLPFFKLFSFADKFDYLLMFVGSLGAIVHGSSMPVFFLLFGQMVNGFGKNQMDLHQMV 80

BLAST of CsGy2G026550 vs. TAIR10
Match: AT2G47000.1 (ATP binding cassette subfamily B4)

HSP 1 Score: 54.7 bits (130), Expect = 3.4e-08
Identity = 24/48 (50.00%), Postives = 34/48 (70.83%), Query Frame = 0

Query: 24 PFHKLLVYADALDWVLMGLGTFGSVIHGMAQPIGYLLLGKALDAFGNN 72
          PF+KL  +AD+ D++LM LGT GS+ +G+  P+  LL G  +DAFG N
Sbjct: 47 PFYKLFAFADSFDFLLMILGTLGSIGNGLGFPLMTLLFGDLIDAFGEN 94

BLAST of CsGy2G026550 vs. TAIR10
Match: AT3G62150.1 (P-glycoprotein 21)

HSP 1 Score: 54.7 bits (130), Expect = 3.4e-08
Identity = 25/53 (47.17%), Postives = 34/53 (64.15%), Query Frame = 0

Query: 24  PFHKLLVYADALDWVLMGLGTFGSVIHGMAQPIGYLLLGKALDAFGNNIDDID 77
           PFHKL  +AD+ D +LM LGT G+V +G+  PI  +L G  +D FG N +  D
Sbjct: 64  PFHKLFAFADSFDIILMILGTIGAVGNGLGFPIMTILFGDVIDVFGQNQNSSD 116

BLAST of CsGy2G026550 vs. TAIR10
Match: AT2G36910.1 (ATP binding cassette subfamily B1)

HSP 1 Score: 51.2 bits (121), Expect = 3.8e-07
Identity = 19/61 (31.15%), Postives = 41/61 (67.21%), Query Frame = 0

Query: 25 FHKLLVYADALDWVLMGLGTFGSVIHGMAQPIGYLLLGKALDAFGNNIDDIDAMVDALYE 84
          F +L  +AD LD+VLMG+G+ G+ +HG + P+        +++FG+N ++++ M++ + +
Sbjct: 29 FKELFRFADGLDYVLMGIGSVGAFVHGCSLPLFLRFFADLVNSFGSNSNNVEKMMEEVLK 88

Query: 85 F 86
          +
Sbjct: 89 Y 89

BLAST of CsGy2G026550 vs. TAIR10
Match: AT3G28345.1 (ABC transporter family protein)

HSP 1 Score: 42.4 bits (98), Expect = 1.8e-04
Identity = 17/55 (30.91%), Postives = 32/55 (58.18%), Query Frame = 0

Query: 28 LLVYADALDWVLMGLGTFGSVIHGMAQPIGYLLLGKALDAFGNNIDDIDAMVDAL 83
          + ++AD +DW+LMGLG  G+V  G   P+  L+  K ++  G +  + D  + ++
Sbjct: 23 IFMHADGVDWLLMGLGLIGAVGDGFTTPLVLLITSKLMNNIGGSSFNTDTFMQSI 77

BLAST of CsGy2G026550 vs. Swiss-Prot
Match: sp|Q9LJX0|AB19B_ARATH (ABC transporter B family member 19 OS=Arabidopsis thaliana OX=3702 GN=ABCB19 PE=1 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 7.3e-08
Identity = 23/58 (39.66%), Postives = 39/58 (67.24%), Query Frame = 0

Query: 22 AFPFHKLLVYADALDWVLMGLGTFGSVIHGMAQPIGYLLLGKALDAFGNNIDDIDAMV 80
          + PF KL  +AD  D++LM +G+ G+++HG + P+ +LL G+ ++ FG N  D+  MV
Sbjct: 23 SLPFFKLFSFADKFDYLLMFVGSLGAIVHGSSMPVFFLLFGQMVNGFGKNQMDLHQMV 80

BLAST of CsGy2G026550 vs. Swiss-Prot
Match: sp|Q9M1Q9|AB21B_ARATH (ABC transporter B family member 21 OS=Arabidopsis thaliana OX=3702 GN=ABCB21 PE=1 SV=2)

HSP 1 Score: 54.7 bits (130), Expect = 6.2e-07
Identity = 25/53 (47.17%), Postives = 34/53 (64.15%), Query Frame = 0

Query: 24  PFHKLLVYADALDWVLMGLGTFGSVIHGMAQPIGYLLLGKALDAFGNNIDDID 77
           PFHKL  +AD+ D +LM LGT G+V +G+  PI  +L G  +D FG N +  D
Sbjct: 64  PFHKLFAFADSFDIILMILGTIGAVGNGLGFPIMTILFGDVIDVFGQNQNSSD 116

BLAST of CsGy2G026550 vs. Swiss-Prot
Match: sp|O80725|AB4B_ARATH (ABC transporter B family member 4 OS=Arabidopsis thaliana OX=3702 GN=ABCB4 PE=1 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 6.2e-07
Identity = 24/48 (50.00%), Postives = 34/48 (70.83%), Query Frame = 0

Query: 24 PFHKLLVYADALDWVLMGLGTFGSVIHGMAQPIGYLLLGKALDAFGNN 72
          PF+KL  +AD+ D++LM LGT GS+ +G+  P+  LL G  +DAFG N
Sbjct: 47 PFYKLFAFADSFDFLLMILGTLGSIGNGLGFPLMTLLFGDLIDAFGEN 94

BLAST of CsGy2G026550 vs. Swiss-Prot
Match: sp|Q9ZR72|AB1B_ARATH (ABC transporter B family member 1 OS=Arabidopsis thaliana OX=3702 GN=ABCB1 PE=1 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 6.8e-06
Identity = 19/61 (31.15%), Postives = 41/61 (67.21%), Query Frame = 0

Query: 25 FHKLLVYADALDWVLMGLGTFGSVIHGMAQPIGYLLLGKALDAFGNNIDDIDAMVDALYE 84
          F +L  +AD LD+VLMG+G+ G+ +HG + P+        +++FG+N ++++ M++ + +
Sbjct: 29 FKELFRFADGLDYVLMGIGSVGAFVHGCSLPLFLRFFADLVNSFGSNSNNVEKMMEEVLK 88

Query: 85 F 86
          +
Sbjct: 89 Y 89

BLAST of CsGy2G026550 vs. TrEMBL
Match: tr|A0A0A0LTG8|A0A0A0LTG8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G428930 PE=4 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 2.2e-41
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 0

Query: 1  MIHEEKSQEDHHLGSSSTDGPAFPFHKLLVYADALDWVLMGLGTFGSVIHGMAQPIGYLL 60
          MIHEEKSQEDHHLGSSSTDGPAFPFHKLLVYADALDWVLMGLGTFGSVIHGMAQPIGYLL
Sbjct: 1  MIHEEKSQEDHHLGSSSTDGPAFPFHKLLVYADALDWVLMGLGTFGSVIHGMAQPIGYLL 60

Query: 61 LGKALDAFGNNIDDIDAMVDALYE 85
          LGKALDAFGNNIDDIDAMVDALYE
Sbjct: 61 LGKALDAFGNNIDDIDAMVDALYE 84

BLAST of CsGy2G026550 vs. TrEMBL
Match: tr|A0A1S4E3X0|A0A1S4E3X0_CUCME (LOW QUALITY PROTEIN: ABC transporter B family member 19-like OS=Cucumis melo OX=3656 GN=LOC103501134 PE=4 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 2.6e-34
Identity = 77/84 (91.67%), Postives = 78/84 (92.86%), Query Frame = 0

Query: 1  MIHEEKSQEDHHLGSSSTDGPAFPFHKLLVYADALDWVLMGLGTFGSVIHGMAQPIGYLL 60
          MIHEEKSQE +HLGSSS DGP FPFHKLLVYADA DWVLMGLGTFGS IHGMAQPIGYLL
Sbjct: 1  MIHEEKSQE-YHLGSSSIDGP-FPFHKLLVYADAFDWVLMGLGTFGSAIHGMAQPIGYLL 60

Query: 61 LGKALDAFGNNIDDIDAMVDALYE 85
          LGKALDAFGNNI DIDAMVDALYE
Sbjct: 61 LGKALDAFGNNIGDIDAMVDALYE 82

BLAST of CsGy2G026550 vs. TrEMBL
Match: tr|A0A0A0LQN3|A0A0A0LQN3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G428910 PE=4 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 1.3e-25
Identity = 60/84 (71.43%), Postives = 71/84 (84.52%), Query Frame = 0

Query: 1  MIHEEKSQEDHHLGSSSTDGPAFPFHKLLVYADALDWVLMGLGTFGSVIHGMAQPIGYLL 60
          M +EEK+QE++    S+T   A PFHKLL Y D+LDWVLMGLGTFGS++HGMAQPIGYLL
Sbjct: 1  MSYEEKNQEEN---GSTTRDDALPFHKLLSYGDSLDWVLMGLGTFGSLLHGMAQPIGYLL 60

Query: 61 LGKALDAFGNNIDDIDAMVDALYE 85
          LGKAL+AFGNNI D+DAMV ALY+
Sbjct: 61 LGKALNAFGNNITDLDAMVHALYQ 81

BLAST of CsGy2G026550 vs. TrEMBL
Match: tr|A0A1S4E3Y4|A0A1S4E3Y4_CUCME (ABC transporter B family member 19-like OS=Cucumis melo OX=3656 GN=LOC103501136 PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 6.4e-25
Identity = 61/84 (72.62%), Postives = 71/84 (84.52%), Query Frame = 0

Query: 1  MIHEEKSQEDHHLGSSSTDGPAFPFHKLLVYADALDWVLMGLGTFGSVIHGMAQPIGYLL 60
          M +EEK Q + + GS S D  A PFHKLL Y D+LDWVLMGLGTFGS++HGMAQPIGYLL
Sbjct: 1  MSYEEKKQLEEN-GSRSND--ALPFHKLLSYGDSLDWVLMGLGTFGSLLHGMAQPIGYLL 60

Query: 61 LGKALDAFGNNIDDIDAMVDALYE 85
          LGKAL+AFGNNI+D+DAMV ALY+
Sbjct: 61 LGKALNAFGNNINDLDAMVHALYQ 81

BLAST of CsGy2G026550 vs. TrEMBL
Match: tr|A0A200QFV1|A0A200QFV1_9MAGN (ABC transporter OS=Macleaya cordata OX=56857 GN=BVC80_8743g2 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 1.9e-21
Identity = 55/78 (70.51%), Postives = 62/78 (79.49%), Query Frame = 0

Query: 7  SQEDHHLGSSSTDGPAFPFHKLLVYADALDWVLMGLGTFGSVIHGMAQPIGYLLLGKALD 66
          + E   L S ST+ P  PFHKLL YADA DW LM LGT GSV+HGMAQPIGYLLLGKAL+
Sbjct: 20 NDEIKELKSKSTNKP-LPFHKLLSYADAFDWTLMALGTLGSVVHGMAQPIGYLLLGKALN 79

Query: 67 AFGNNIDDIDAMVDALYE 85
          AFG+NI+D DAMV ALY+
Sbjct: 80 AFGDNINDTDAMVKALYK 96

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN63321.13.3e-41100.00hypothetical protein Csa_2G428930 [Cucumis sativus][more]
XP_016902931.13.9e-3491.67PREDICTED: LOW QUALITY PROTEIN: ABC transporter B family member 19-like [Cucumis... [more]
XP_022986167.17.1e-2879.76ABC transporter B family member 19-like [Cucurbita maxima][more]
XP_023513249.11.6e-2777.91LOW QUALITY PROTEIN: ABC transporter B family member 13-like [Cucurbita pepo sub... [more]
KGN63319.11.9e-2571.43hypothetical protein Csa_2G428910 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
AT3G28860.14.0e-0939.66ATP binding cassette subfamily B19[more]
AT2G47000.13.4e-0850.00ATP binding cassette subfamily B4[more]
AT3G62150.13.4e-0847.17P-glycoprotein 21[more]
AT2G36910.13.8e-0731.15ATP binding cassette subfamily B1[more]
AT3G28345.11.8e-0430.91ABC transporter family protein[more]
Match NameE-valueIdentityDescription
sp|Q9LJX0|AB19B_ARATH7.3e-0839.66ABC transporter B family member 19 OS=Arabidopsis thaliana OX=3702 GN=ABCB19 PE=... [more]
sp|Q9M1Q9|AB21B_ARATH6.2e-0747.17ABC transporter B family member 21 OS=Arabidopsis thaliana OX=3702 GN=ABCB21 PE=... [more]
sp|O80725|AB4B_ARATH6.2e-0750.00ABC transporter B family member 4 OS=Arabidopsis thaliana OX=3702 GN=ABCB4 PE=1 ... [more]
sp|Q9ZR72|AB1B_ARATH6.8e-0631.15ABC transporter B family member 1 OS=Arabidopsis thaliana OX=3702 GN=ABCB1 PE=1 ... [more]
Match NameE-valueIdentityDescription
tr|A0A0A0LTG8|A0A0A0LTG8_CUCSA2.2e-41100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G428930 PE=4 SV=1[more]
tr|A0A1S4E3X0|A0A1S4E3X0_CUCME2.6e-3491.67LOW QUALITY PROTEIN: ABC transporter B family member 19-like OS=Cucumis melo OX=... [more]
tr|A0A0A0LQN3|A0A0A0LQN3_CUCSA1.3e-2571.43Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G428910 PE=4 SV=1[more]
tr|A0A1S4E3Y4|A0A1S4E3Y4_CUCME6.4e-2572.62ABC transporter B family member 19-like OS=Cucumis melo OX=3656 GN=LOC103501136 ... [more]
tr|A0A200QFV1|A0A200QFV1_9MAGN1.9e-2170.51ABC transporter OS=Macleaya cordata OX=56857 GN=BVC80_8743g2 PE=4 SV=1[more]
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
Vocabulary: Molecular Function
TermDefinition
GO:0005524ATP binding
Vocabulary: INTERPRO
TermDefinition
IPR036640ABC1_TM_sf
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055085 transmembrane transport
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0042626 ATPase activity, coupled to transmembrane movement of substances
molecular_function GO:0005524 ATP binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy2G026550.1CsGy2G026550.1mRNA


Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036640ABC transporter type 1, transmembrane domain superfamilyGENE3DG3DSA:1.20.1560.10coord: 19..84
e-value: 6.8E-10
score: 39.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..21

The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsGy2G026550Csa2G428930Cucumber (Chinese Long) v2cgybcuB057
CsGy2G026550Cla97C02G034650Watermelon (97103) v2cgybwmbB116
The following gene(s) are paralogous to this gene:

None