CsGy2G025480 (gene) Cucumber (Gy14) v2
The following sequences are available for this feature:
Legend: CDSexon Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCCTCAATTGGTGCTCGGTCTGCTTTCCGCTCATTCTCCGGTTCGGCACGCCGTGCTGCTGCTCACATCGGTTCTCAACCCAAGGCCTCATCATCCTCTCCCTTTCGCATGGCAACTAACAAACCCCTCTCTCATCGTACTTTCAGGTTCGTTTCTTAATGCTTTTGCATCCGTTTTAAGTGCGAAAAGTTTCTGAATCTAGAGCTCTTTCAGTTTTTTTCTTTTGTTCTCCCCAGAAGTAGAACAACGAAAACAGTGTTCAATCTTCATCTTTATTTCTCTCTTCAGTGTTTTAGTTGTGAAACGTTTCAGTAAAATAAGGTGATCTATTTTGCTTGAAGGTGTGCGCCTGAGATGAGCTTCTGTTTGGAGTCAATGATGCCATTTCACTCTGTGTCGTCCTCAGCTTTGATGACTTCAATGCTCTCTATCTCGCGCCACAGCTGTGGTTGGCTCCCCGAAGGTGCATAA ATGGCCTCAATTGGTGCTCGGTCTGCTTTCCGCTCATTCTCCGGTTCGGCACGCCGTGCTGCTGCTCACATCGGTTCTCAACCCAAGGCCTCATCATCCTCTCCCTTTCGCATGGCAACTAACAAACCCCTCTCTCATCGTACTTTCAGGTGTGCGCCTGAGATGAGCTTCTGTTTGGAGTCAATGATGCCATTTCACTCTGTGTCGTCCTCAGCTTTGATGACTTCAATGCTCTCTATCTCGCGCCACAGCTGTGGTTGGCTCCCCGAAGGTGCATAA ATGGCCTCAATTGGTGCTCGGTCTGCTTTCCGCTCATTCTCCGGTTCGGCACGCCGTGCTGCTGCTCACATCGGTTCTCAACCCAAGGCCTCATCATCCTCTCCCTTTCGCATGGCAACTAACAAACCCCTCTCTCATCGTACTTTCAGGTGTGCGCCTGAGATGAGCTTCTGTTTGGAGTCAATGATGCCATTTCACTCTGTGTCGTCCTCAGCTTTGATGACTTCAATGCTCTCTATCTCGCGCCACAGCTGTGGTTGGCTCCCCGAAGGTGCATAA MASIGARSAFRSFSGSARRAAAHIGSQPKASSSSPFRMATNKPLSHRTFRCAPEMSFCLESMMPFHSVSSSALMTSMLSISRHSCGWLPEGA
BLAST of CsGy2G025480 vs. NCBI nr
Match: KGN63193.1 (hypothetical protein Csa_2G408390 [Cucumis sativus]) HSP 1 Score: 176.4 bits (446), Expect = 4.4e-41 Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 0
BLAST of CsGy2G025480 vs. NCBI nr
Match: XP_011649974.1 (PREDICTED: protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 [Cucumis sativus]) HSP 1 Score: 174.9 bits (442), Expect = 1.3e-40 Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 0
BLAST of CsGy2G025480 vs. NCBI nr
Match: XP_011649976.1 (PREDICTED: protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X3 [Cucumis sativus] >XP_011649978.1 PREDICTED: protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X2 [Cucumis sativus]) HSP 1 Score: 174.9 bits (442), Expect = 1.3e-40 Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 0
BLAST of CsGy2G025480 vs. NCBI nr
Match: XP_011649975.1 (PREDICTED: protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X2 [Cucumis sativus] >KGN63195.1 hypothetical protein Csa_2G408410 [Cucumis sativus]) HSP 1 Score: 172.6 bits (436), Expect = 6.4e-40 Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 0
BLAST of CsGy2G025480 vs. NCBI nr
Match: KGN63196.1 (hypothetical protein Csa_2G408420 [Cucumis sativus]) HSP 1 Score: 172.6 bits (436), Expect = 6.4e-40 Identity = 90/92 (97.83%), Postives = 90/92 (97.83%), Query Frame = 0
BLAST of CsGy2G025480 vs. TAIR10
Match: AT1G28395.2 (unknown protein) HSP 1 Score: 64.7 bits (156), Expect = 3.4e-11 Identity = 38/89 (42.70%), Postives = 57/89 (64.04%), Query Frame = 0
BLAST of CsGy2G025480 vs. TAIR10
Match: AT2G33847.1 (unknown protein) HSP 1 Score: 60.8 bits (146), Expect = 4.9e-10 Identity = 36/79 (45.57%), Postives = 50/79 (63.29%), Query Frame = 0
BLAST of CsGy2G025480 vs. TAIR10
Match: AT2G20585.1 (nuclear fusion defective 6) HSP 1 Score: 55.1 bits (131), Expect = 2.7e-08 Identity = 38/88 (43.18%), Postives = 52/88 (59.09%), Query Frame = 0
BLAST of CsGy2G025480 vs. Swiss-Prot
Match: sp|Q93ZJ3|NFD6_ARATH (Protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial OS=Arabidopsis thaliana OX=3702 GN=NFD6 PE=3 SV=1) HSP 1 Score: 55.1 bits (131), Expect = 4.9e-07 Identity = 38/88 (43.18%), Postives = 52/88 (59.09%), Query Frame = 0
BLAST of CsGy2G025480 vs. TrEMBL
Match: tr|A0A0A0LN06|A0A0A0LN06_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G408390 PE=4 SV=1) HSP 1 Score: 176.4 bits (446), Expect = 2.9e-41 Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 0
BLAST of CsGy2G025480 vs. TrEMBL
Match: tr|A0A0A0LMP1|A0A0A0LMP1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G408410 PE=4 SV=1) HSP 1 Score: 172.6 bits (436), Expect = 4.2e-40 Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 0
BLAST of CsGy2G025480 vs. TrEMBL
Match: tr|A0A0A0LT36|A0A0A0LT36_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G408420 PE=4 SV=1) HSP 1 Score: 172.6 bits (436), Expect = 4.2e-40 Identity = 90/92 (97.83%), Postives = 90/92 (97.83%), Query Frame = 0
BLAST of CsGy2G025480 vs. TrEMBL
Match: tr|A0A1S4E0Y3|A0A1S4E0Y3_CUCME (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103496017 PE=4 SV=1) HSP 1 Score: 166.4 bits (420), Expect = 3.0e-38 Identity = 87/91 (95.60%), Postives = 88/91 (96.70%), Query Frame = 0
BLAST of CsGy2G025480 vs. TrEMBL
Match: tr|A0A1S4E0X5|A0A1S4E0X5_CUCME (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X3 OS=Cucumis melo OX=3656 GN=LOC103496017 PE=4 SV=1) HSP 1 Score: 166.4 bits (420), Expect = 3.0e-38 Identity = 87/91 (95.60%), Postives = 88/91 (96.70%), Query Frame = 0
The following BLAST results are available for this feature:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
The following gene(s) are orthologous to this gene: None The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |