CsGy2G025400 (gene) Cucumber (Gy14) v2

Overview
NameCsGy2G025400
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
Descriptionacanthoscurrin-1-like
LocationChr2 : 32878347 .. 32880252 (-)
Genome Viewer
Gene Expression
   



Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CAGAGAGTATATGCCACAGCTCCAACGCTTGGACACCTTTAAACATACACATGTCTTATTGACAACAAAATTAAATGAGTTTATGCGTTAAAAAAATAAGGAACAAACACATGTATCACTCCCCAACCTCAACTATTAGCCTCTATAAATAGCAGCCAAAACCCAACTACTTTTCCCATCATCACAAACCACCTTTTTTTGTAGAGTGGGAGTTGGTTTTGCTGTGAAGAGAGAATGAAGACTAAAGGCTTTCTTTTTGGGTGTCTTCTTCTTGTATCTGCTCTGGCCGTTTCATGGGCTGTAGAATCCCGCACACAGCCTATCCAACATGACCAACAAGGTATATTCTAAGTTATTTATTTAATTTGTTTTGGAAAAATAGCAATATGTGGGTTTTTGGCGTTTAAATTTTTTAAATCATACTTTTAGAGACTAGAGAATTAAAAAAAAATTAATTTAATTTAAAATTTCATGTAATTATTAAAATACTAATATTATTAAAAAATATTTAAAATCTTGTATAATTATTAAAAATACTAATAATAATAAAGTAAAAATGATGTAAAGTTATTTGGGAAACTCCATTAGTAACCTACTAACATGCCATTTGTGCATTTAAACTTTTATCCAAACTTCATTCGATAGAATGAGAATGATAGTAAATATCAGTAATATCAGTGCATATTTAATAGAAGTCTGTATAAGTTTATATTTGTGTACCTATCCTTAATAGAATATGATATTAAATATTTTTTTTAAAACTTTTATCCTCTTAAAAAATTCTCCATCTCTGTATCATTATCTCTTACCCTATGCGTAAGAGAGGAGGATGCACTAAACCATTAGTTCTTTGTGCTGTCTTCTTTGTGCACCTAGGTGTCATCCATCACAAAATTACTTTTTCACTTGAGTGTCTACACGTACTACGCAAATAATTGTAGTCCCAAAATTACTCTTTTTCTTATATTTTATTCCTATAAAGTGTTATAAATTACTTCACAAATAATTAATTAGAGCAATAAAAACAATTTGTATAAAAATTATAACAATCAATACTTAAAATACATCCATGACTAGCTAAGATGCTTCTATCTAAGAACTCAGGGAATGTAAAACCTTCAACTGCTCAGGGAAAAATTAATGAAAAATTGCTGTATAGTAATTTATTTTTGAAACAATTATTAAAAAGTTATTTTCTGTATGGAAAGAATGAGATTATGGCAGGTAACAAGTTTTGGTGAAACTTCCAAAAATAAATGCTACCCCACTGTTGTTTTATGAATATTTAGAAATACTTGTTTTGGTCCTATTACATTTTCTATGTCCTGTTTACCATATTTGGTATGCAGTGGCCCATGACGTAGAAGAGGCTAAACATAGAAGTGGCAGCGGGGGCGGCGGCAGTTACGGAGGAGGCGGCGGAGGATCTAGCGGTGGTGGGTCTGGAGGAGGTGGGTCAGGCGGCGGTGGCTATGGTGGCGGAGGCGGTCAAGGAGGAGGTCATGGTGGAGGATCTGGCGGAGGCGGTCAAGGAGGAGGTCATGGTGGTGGAGGATCTGGCGGAGGCGGTCAAGGAGGAGGTCATGGCGGTGGAGGATCTGGCGGAGGCGGTCAAGGAGGAGGTCATGGTGGTGGAGGATCTGGCGGAGGCGGTCAGGGCGGTGGAGGGTCTGGTGGAGGCGGTCAGGGAGGAGGTCACGGGGGTGGAGGGTCTGGTGGAGGTGGTCAAGGAGGCGGACATGGGGGAGGTGGACAAGGAGGAGGGGGGGATATGGCGGAGGAGGAGGAGGGTACAAGAAGCCAAGCAAGGATTGAAGTGGAGAACACCAAGGAGAAAGAGGTGTTGGCTTGGTGGTGGACTAGGAGGCGGCCACATAAACTAAAACCGAAGAAATATATAACATAA

mRNA sequence

CAGAGAGTATATGCCACAGCTCCAACGCTTGGACACCTTTAAACATACACATGTCTTATTGACAACAAAATTAAATGAGTTTATGCGTTAAAAAAATAAGGAACAAACACATGTATCACTCCCCAACCTCAACTATTAGCCTCTATAAATAGCAGCCAAAACCCAACTACTTTTCCCATCATCACAAACCACCTTTTTTTGTAGAGTGGGAGTTGGTTTTGCTGTGAAGAGAGAATGAAGACTAAAGGCTTTCTTTTTGGGTGTCTTCTTCTTGTATCTGCTCTGGCCGTTTCATGGGCTGTAGAATCCCGCACACAGCCTATCCAACATGACCAACAAGTGGCCCATGACGTAGAAGAGGCTAAACATAGAAGTGGCAGCGGGGGCGGCGGCAGTTACGGAGGAGGCGGCGGAGGATCTAGCGGTGGTGGGTCTGGAGGAGGTGGGTCAGGCGGCGGTGGCTATGGTGGCGGAGGCGGTCAAGGAGGAGGTCATGGTGGAGGATCTGGCGGAGGCGGTCAAGGAGGAGGTCATGGTGGTGGAGGATCTGGCGGAGGCGGTCAAGGAGGAGGTCATGGCGGTGGAGGATCTGGCGGAGGCGGTCAAGGAGGAGGTCATGGTGGTGGAGGATCTGGCGGAGGCGGTCAGGGCGGTGGAGGGTCTGGTGGAGGCGGTCAGGGAGGAGGTCACGGGGGTGGAGGGTCTGGTGGAGGTGGTCAAGGAGGCGGACATGGGGGAGGTGGACAAGGAGGAGGGGGGGATATGGCGGAGGAGGAGGAGGGTACAAGAAGCCAAGCAAGGATTGAAGTGGAGAACACCAAGGAGAAAGAGGTGTTGGCTTGGTGGTGGACTAGGAGGCGGCCACATAAACTAAAACCGAAGAAATATATAACATAA

Coding sequence (CDS)

ATGAAGACTAAAGGCTTTCTTTTTGGGTGTCTTCTTCTTGTATCTGCTCTGGCCGTTTCATGGGCTGTAGAATCCCGCACACAGCCTATCCAACATGACCAACAAGTGGCCCATGACGTAGAAGAGGCTAAACATAGAAGTGGCAGCGGGGGCGGCGGCAGTTACGGAGGAGGCGGCGGAGGATCTAGCGGTGGTGGGTCTGGAGGAGGTGGGTCAGGCGGCGGTGGCTATGGTGGCGGAGGCGGTCAAGGAGGAGGTCATGGTGGAGGATCTGGCGGAGGCGGTCAAGGAGGAGGTCATGGTGGTGGAGGATCTGGCGGAGGCGGTCAAGGAGGAGGTCATGGCGGTGGAGGATCTGGCGGAGGCGGTCAAGGAGGAGGTCATGGTGGTGGAGGATCTGGCGGAGGCGGTCAGGGCGGTGGAGGGTCTGGTGGAGGCGGTCAGGGAGGAGGTCACGGGGGTGGAGGGTCTGGTGGAGGTGGTCAAGGAGGCGGACATGGGGGAGGTGGACAAGGAGGAGGGGGGGATATGGCGGAGGAGGAGGAGGGTACAAGAAGCCAAGCAAGGATTGAAGTGGAGAACACCAAGGAGAAAGAGGTGTTGGCTTGGTGGTGGACTAGGAGGCGGCCACATAAACTAAAACCGAAGAAATATATAACATAA

Protein sequence

MKTKGFLFGCLLLVSALAVSWAVESRTQPIQHDQQVAHDVEEAKHRSGSGGGGSYGGGGGGSSGGGSGGGGSGGGGYGGGGGQGGGHGGGSGGGGQGGGHGGGGSGGGGQGGGHGGGGSGGGGQGGGHGGGGSGGGGQGGGGSGGGGQGGGHGGGGSGGGGQGGGHGGGGQGGGGDMAEEEEGTRSQARIEVENTKEKEVLAWWWTRRRPHKLKPKKYIT
Homology
[Close]
BLAST of CsGy2G025400 vs. NCBI nr
Match: XP_011650209.1 (PREDICTED: glycine-rich protein DOT1-like [Cucumis sativus] >KGN63186.1 hypothetical protein Csa_2G407830 [Cucumis sativus])

HSP 1 Score: 99.0 bits (245), Expect = 2.2e-17
Identity = 48/49 (97.96%), Postives = 49/49 (100.00%), Query Frame = 0 

Query: 1  MKTKGFLFGCLLLVSALAVSWAVESRTQPIQHDQQVAHDVEEAKHRSGS 50
          MK+KGFLFGCLLLVSALAVSWAVESRTQPIQHDQQVAHDVEEAKHRSGS
Sbjct: 1  MKSKGFLFGCLLLVSALAVSWAVESRTQPIQHDQQVAHDVEEAKHRSGS 49

[Close]
BLAST of CsGy2G025400 vs. NCBI nr
Match: XP_016901857.1 (PREDICTED: acanthoscurrin-1-like [Cucumis melo])

HSP 1 Score: 90.1 bits (222), Expect = 1.0e-14
Identity = 44/49 (89.80%), Postives = 47/49 (95.92%), Query Frame = 0 

Query: 1  MKTKGFLFGCLLLVSALAVSWAVESRTQPIQHDQQVAHDVEEAKHRSGS 50
          MK+KGFLF CLLLVSALAVSWAVESRTQPIQ+DQQVAHDVEEAKH+ GS
Sbjct: 1  MKSKGFLFVCLLLVSALAVSWAVESRTQPIQNDQQVAHDVEEAKHKGGS 49

[Close]
BLAST of CsGy2G025400 vs. NCBI nr
Match: XP_011650210.1 (PREDICTED: glycine-rich cell wall structural protein 1.0-like [Cucumis sativus])

HSP 1 Score: 63.2 bits (152), Expect = 1.3e-06
Identity = 32/50 (64.00%), Postives = 39/50 (78.00%), Query Frame = 0 

Query: 1   MKTKGFLFGCLLLVSALAVSWAVESRTQPIQHDQQV--AHDVEEAKHRSG 49
           MK+KGF+F CLLLVSAL VSWA+ES T+  Q +QQV  AHD+EE K+  G
Sbjct: 54  MKSKGFVFVCLLLVSALVVSWAIESHTESTQDEQQVNLAHDLEEPKYTHG 103

[Close]
BLAST of CsGy2G025400 vs. TrEMBL
Match: tr|A0A0A0LT28|A0A0A0LT28_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G407830 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 1.4e-17
Identity = 48/49 (97.96%), Postives = 49/49 (100.00%), Query Frame = 0 

Query: 1  MKTKGFLFGCLLLVSALAVSWAVESRTQPIQHDQQVAHDVEEAKHRSGS 50
          MK+KGFLFGCLLLVSALAVSWAVESRTQPIQHDQQVAHDVEEAKHRSGS
Sbjct: 1  MKSKGFLFGCLLLVSALAVSWAVESRTQPIQHDQQVAHDVEEAKHRSGS 49

[Close]
BLAST of CsGy2G025400 vs. TrEMBL
Match: tr|A0A1S4E0T9|A0A1S4E0T9_CUCME (acanthoscurrin-1-like OS=Cucumis melo OX=3656 GN=LOC103496044 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 6.6e-15
Identity = 44/49 (89.80%), Postives = 47/49 (95.92%), Query Frame = 0 

Query: 1  MKTKGFLFGCLLLVSALAVSWAVESRTQPIQHDQQVAHDVEEAKHRSGS 50
          MK+KGFLF CLLLVSALAVSWAVESRTQPIQ+DQQVAHDVEEAKH+ GS
Sbjct: 1  MKSKGFLFVCLLLVSALAVSWAVESRTQPIQNDQQVAHDVEEAKHKGGS 49

The following BLAST results are available for this feature:
BLAST of CsGy2G025400 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_011650209.12.2e-1797.96PREDICTED: glycine-rich protein DOT1-like [Cucumis sativus] >KGN63186.1 hypothet... [more]
XP_016901857.11.0e-1489.80PREDICTED: acanthoscurrin-1-like [Cucumis melo][more]
XP_011650210.11.3e-0664.00PREDICTED: glycine-rich cell wall structural protein 1.0-like [Cucumis sativus][more]
BLAST of CsGy2G025400 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsGy2G025400 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsGy2G025400 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LT28|A0A0A0LT28_CUCSA1.4e-1797.96Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G407830 PE=4 SV=1[more]
tr|A0A1S4E0T9|A0A1S4E0T9_CUCME6.6e-1589.80acanthoscurrin-1-like OS=Cucumis melo OX=3656 GN=LOC103496044 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy2G025400.1CsGy2G025400.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 178..198
NoneNo IPR availablePRINTSPR01228EGGSHELLcoord: 163..181
score: 40.13
coord: 8..24
score: 25.0
coord: 48..59
score: 45.83
coord: 109..124
score: 57.81
coord: 136..146
score: 44.32
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 178..194
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 32..194

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsGy2G025400Csa2G407830Cucumber (Chinese Long) v2cgybcuB057
CsGy2G025400CSPI02G25780Wild cucumber (PI 183967)cgybcpiB057
CsGy2G025400CsaV3_2G034290Cucumber (Chinese Long) v3cgybcucB065
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsGy2G025400Cucumber (Gy14) v2cgybcgybB072
CsGy2G025400Cucurbita maxima (Rimu)cgybcmaB211
CsGy2G025400Cucurbita maxima (Rimu)cgybcmaB230
CsGy2G025400Cucurbita moschata (Rifu)cgybcmoB151
CsGy2G025400Cucurbita moschata (Rifu)cgybcmoB204
CsGy2G025400Cucurbita moschata (Rifu)cgybcmoB212
CsGy2G025400Cucurbita moschata (Rifu)cgybcmoB221
CsGy2G025400Cucurbita pepo (Zucchini)cgybcpeB187
CsGy2G025400Cucurbita pepo (Zucchini)cgybcpeB195
CsGy2G025400Cucurbita pepo (Zucchini)cgybcpeB235
CsGy2G025400Cucurbita pepo (Zucchini)cgybcpeB241
CsGy2G025400Cucumber (Chinese Long) v2cgybcuB085
CsGy2G025400Bottle gourd (USVL1VR-Ls)cgyblsiB087
CsGy2G025400Bottle gourd (USVL1VR-Ls)cgyblsiB092
CsGy2G025400Melon (DHL92) v3.5.1cgybmeB083
CsGy2G025400Melon (DHL92) v3.5.1cgybmeB089
CsGy2G025400Melon (DHL92) v3.6.1cgybmedB080
CsGy2G025400Melon (DHL92) v3.6.1cgybmedB085
CsGy2G025400Watermelon (Charleston Gray)cgybwcgB117
CsGy2G025400Watermelon (Charleston Gray)cgybwcgB123
CsGy2G025400Watermelon (97103) v1cgybwmB138
CsGy2G025400Watermelon (97103) v1cgybwmB146
CsGy2G025400Wild cucumber (PI 183967)cgybcpiB087
CsGy2G025400Silver-seed gourdcarcgybB0794
CsGy2G025400Cucumber (Chinese Long) v3cgybcucB094
CsGy2G025400Watermelon (97103) v2cgybwmbB111
CsGy2G025400Watermelon (97103) v2cgybwmbB118
CsGy2G025400Wax gourdcgybwgoB168