CsGy2G025160 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy2G025160
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Unknown Protein
Location	Chr2 : 32718040 .. 32718621 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGAACTTGCTAAACGTGTATGTGAATACCAATTGCAATGATCAATATGGTGAGTATGCAGAAGAATATGATGGCATGTACCAAAATGGCAATTCCACTGGTGTTCATATTGCCAAACTCCACCACCCTGATTCTCGCCGGCAACTGAAAAAGCAGCCCCGGGGAGAGGAGAATGAACAACGCCACCGCCACCACAACTGGACCCCAGTCTGCACTCATCTCTACCCACACAAAATAAGGTATGCTTTGAAATTGAACTAGTTGATAGAATCACGCTTCAAGTGTCAATGAAAGGGAGAGAATTCAAGGGTTGGATTGGAAGTAGCTGAAAGTAAAGAAGGGGATTATAAGGAGTGAATAAGTGTGTTGATTTGCTTAATGAAGAAGTTGTTTGAATGGATGCCAAACTTGGAGACAAAGAAGAAAATGGTTTATAAGCAAGGGAAAGGTATGTGGGATGGGTTGATGGAAGTGGATCTGCTTTATGAACATGGAAAGGAAAGGATTTAAATTTACCTTCATTTGAAGAGCCCTTTTTTTTTTTTTCCGTTCTTTTTTCTTTCTTTTAGGGATGTGTGA

mRNA sequence

ATGATGAACTTGCTAAACGTGTATGTGAATACCAATTGCAATGATCAATATGGTGAGTATGCAGAAGAATATGATGGCATGTACCAAAATGGCAATTCCACTGGTGTTCATATTGCCAAACTCCACCACCCTGATTCTCGCCGGCAACTGAAAAAGCAGCCCCGGGGAGAGGAGAATGAACAACGCCACCGCCACCACAACTGGACCCCAGTCTGCACTCATCTCTACCCACACAAAATAAGGGATGTGTGA

Coding sequence (CDS)

ATGATGAACTTGCTAAACGTGTATGTGAATACCAATTGCAATGATCAATATGGTGAGTATGCAGAAGAATATGATGGCATGTACCAAAATGGCAATTCCACTGGTGTTCATATTGCCAAACTCCACCACCCTGATTCTCGCCGGCAACTGAAAAAGCAGCCCCGGGGAGAGGAGAATGAACAACGCCACCGCCACCACAACTGGACCCCAGTCTGCACTCATCTCTACCCACACAAAATAAGGGATGTGTGA

Protein sequence

MMNLLNVYVNTNCNDQYGEYAEEYDGMYQNGNSTGVHIAKLHHPDSRRQLKKQPRGEENEQRHRHHNWTPVCTHLYPHKIRDV

Homology

[Close]

BLAST of CsGy2G025160 vs. NCBI nr
Match: ACU16688.1 (unknown [Glycine max])

HSP 1 Score: 57.4 bits (137), Expect = 2.7e-05
Identity = 26/68 (38.24%), Postives = 46/68 (67.65%), Query Frame = 0


Query: 9  VNTNCNDQYGEYAEEYDGMYQNGNSTGVHIAKLHHPDSRRQLKKQPRGEENEQRHRHHNW 68
          ++TN N + G   +E D + Q+ N TG+H+ KL+H    RQLK++ R ++++Q H +H+W
Sbjct: 1  MHTNSNKKDGNETKEDDCVDQDRNCTGLHVPKLYHSAPPRQLKQKTRAKQHKQHHCYHHW 60

Query: 69 TPVCTHLY 77
          TP+  ++Y
Sbjct: 61 TPIRHYIY 68

[Close]

BLAST of CsGy2G025160 vs. NCBI nr
Match: PKU61378.1 (hypothetical protein MA16_Dca029031 [Dendrobium catenatum])

HSP 1 Score: 56.6 bits (135), Expect = 4.6e-05
Identity = 28/65 (43.08%), Postives = 46/65 (70.77%), Query Frame = 0


Query: 7  VYVNTNCNDQYGEYAEEYDGMYQNGNSTGVHIAKLHHPDSRRQLKKQPRGEENEQRHRHH 66
          +YVNTN ND+  EYA+E + M +N NST  H+++LHH   RRQL+++ R +++++  R+ 
Sbjct: 1  MYVNTNSNDKNSEYAKEENAMNKNCNSTCRHVSELHHSRPRRQLEQKTRRQQDKEYRRND 60

Query: 67 NWTPV 72
            TP+
Sbjct: 61 YRTPI 65

[Close]

BLAST of CsGy2G025160 vs. NCBI nr
Match: KOM25439.1 (hypothetical protein LR48_Vigan102s009700 [Vigna angularis] >BAT86634.1 hypothetical protein VIGAN_04430600 [Vigna angularis var. angularis])

HSP 1 Score: 54.7 bits (130), Expect = 1.8e-04
Identity = 29/73 (39.73%), Postives = 48/73 (65.75%), Query Frame = 0


Query: 2  MNLLNVYVNTNCNDQYGEYAEEYDGMYQNGNSTGVHIAKLHHPDSRRQLKKQPRGEENEQ 61
          M L +V ++TN N +YG   +E DG+ Q+ +STG+H+ KLHH      L ++ R ++++Q
Sbjct: 1  MELASVDMHTNSNKKYGNETKEDDGVDQDRDSTGLHVPKLHHSALPWNLNQKTRTQQHKQ 60

Query: 62 RHRHHNWTPVCTH 75
           H +H+ TP+ TH
Sbjct: 61 HHCYHHRTPI-TH 72

[Close]

BLAST of CsGy2G025160 vs. NCBI nr
Match: KMT09683.1 (hypothetical protein BVRB_6g131330 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 54.3 bits (129), Expect = 2.3e-04
Identity = 27/49 (55.10%), Postives = 36/49 (73.47%), Query Frame = 0


Query: 27 MYQNGNSTGVHIAKLHHPDSRRQLKKQPRGEENEQRHRHHNWTPVCTHL 76
          M QN ++TGVHI+KLH+P S RQLKK+P  ++ +QRH HH   P+  HL
Sbjct: 1  MNQNRDTTGVHISKLHYPCSCRQLKKKPWRQQYKQRHCHHYRPPIYHHL 49

[Close]

BLAST of CsGy2G025160 vs. NCBI nr
Match: KYP45148.1 (hypothetical protein KK1_033352, partial [Cajanus cajan])

HSP 1 Score: 53.5 bits (127), Expect = 3.9e-04
Identity = 24/58 (41.38%), Postives = 42/58 (72.41%), Query Frame = 0


Query: 14 NDQYGEYAEEYDGMYQNGNSTGVHIAKLHHPDSRRQLKKQPRGEENEQRHRHHNWTPV 72
          +++ G+ A+  DG+ QNG++ G+H+ +L +P S R LK++PR E++EQ HR  + TP+
Sbjct: 3  DEEDGDEAKVDDGVNQNGSTAGLHVTELSNPSSSRYLKQEPRAEQHEQHHRDDHRTPI 60

[Close]

BLAST of CsGy2G025160 vs. TrEMBL
Match: tr|C6T4R7|C6T4R7_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 PE=2 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 1.8e-05
Identity = 26/68 (38.24%), Postives = 46/68 (67.65%), Query Frame = 0


Query: 9  VNTNCNDQYGEYAEEYDGMYQNGNSTGVHIAKLHHPDSRRQLKKQPRGEENEQRHRHHNW 68
          ++TN N + G   +E D + Q+ N TG+H+ KL+H    RQLK++ R ++++Q H +H+W
Sbjct: 1  MHTNSNKKDGNETKEDDCVDQDRNCTGLHVPKLYHSAPPRQLKQKTRAKQHKQHHCYHHW 60

Query: 69 TPVCTHLY 77
          TP+  ++Y
Sbjct: 61 TPIRHYIY 68

[Close]

BLAST of CsGy2G025160 vs. TrEMBL
Match: tr|A0A2I0VD93|A0A2I0VD93_9ASPA (Uncharacterized protein OS=Dendrobium catenatum OX=906689 GN=MA16_Dca029031 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 3.1e-05
Identity = 28/65 (43.08%), Postives = 46/65 (70.77%), Query Frame = 0


Query: 7  VYVNTNCNDQYGEYAEEYDGMYQNGNSTGVHIAKLHHPDSRRQLKKQPRGEENEQRHRHH 66
          +YVNTN ND+  EYA+E + M +N NST  H+++LHH   RRQL+++ R +++++  R+ 
Sbjct: 1  MYVNTNSNDKNSEYAKEENAMNKNCNSTCRHVSELHHSRPRRQLEQKTRRQQDKEYRRND 60

Query: 67 NWTPV 72
            TP+
Sbjct: 61 YRTPI 65

[Close]

BLAST of CsGy2G025160 vs. TrEMBL
Match: tr|A0A0L9T5S1|A0A0L9T5S1_PHAAN (Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan102s009700 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.2e-04
Identity = 29/73 (39.73%), Postives = 48/73 (65.75%), Query Frame = 0


Query: 2  MNLLNVYVNTNCNDQYGEYAEEYDGMYQNGNSTGVHIAKLHHPDSRRQLKKQPRGEENEQ 61
          M L +V ++TN N +YG   +E DG+ Q+ +STG+H+ KLHH      L ++ R ++++Q
Sbjct: 1  MELASVDMHTNSNKKYGNETKEDDGVDQDRDSTGLHVPKLHHSALPWNLNQKTRTQQHKQ 60

Query: 62 RHRHHNWTPVCTH 75
           H +H+ TP+ TH
Sbjct: 61 HHCYHHRTPI-TH 72

[Close]

BLAST of CsGy2G025160 vs. TrEMBL
Match: tr|A0A0S3S1B6|A0A0S3S1B6_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.04G430600 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.2e-04
Identity = 29/73 (39.73%), Postives = 48/73 (65.75%), Query Frame = 0


Query: 2  MNLLNVYVNTNCNDQYGEYAEEYDGMYQNGNSTGVHIAKLHHPDSRRQLKKQPRGEENEQ 61
          M L +V ++TN N +YG   +E DG+ Q+ +STG+H+ KLHH      L ++ R ++++Q
Sbjct: 1  MELASVDMHTNSNKKYGNETKEDDGVDQDRDSTGLHVPKLHHSALPWNLNQKTRTQQHKQ 60

Query: 62 RHRHHNWTPVCTH 75
           H +H+ TP+ TH
Sbjct: 61 HHCYHHRTPI-TH 72

[Close]

BLAST of CsGy2G025160 vs. TrEMBL
Match: tr|A0A151RRJ8|A0A151RRJ8_CAJCA (Uncharacterized protein (Fragment) OS=Cajanus cajan OX=3821 GN=KK1_033352 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 2.6e-04
Identity = 24/58 (41.38%), Postives = 42/58 (72.41%), Query Frame = 0


Query: 14 NDQYGEYAEEYDGMYQNGNSTGVHIAKLHHPDSRRQLKKQPRGEENEQRHRHHNWTPV 72
          +++ G+ A+  DG+ QNG++ G+H+ +L +P S R LK++PR E++EQ HR  + TP+
Sbjct: 3  DEEDGDEAKVDDGVNQNGSTAGLHVTELSNPSSSRYLKQEPRAEQHEQHHRDDHRTPI 60

The following BLAST results are available for this feature:

BLAST of CsGy2G025160 vs. NCBI nr


Match Name	E-value	Identity	Description
ACU16688.1	2.7e-05	38.24	unknown [Glycine max]	[more]
PKU61378.1	4.6e-05	43.08	hypothetical protein MA16_Dca029031 [Dendrobium catenatum]	[more]
KOM25439.1	1.8e-04	39.73	hypothetical protein LR48_Vigan102s009700 [Vigna angularis] >BAT86634.1 hypothet...	[more]
KMT09683.1	2.3e-04	55.10	hypothetical protein BVRB_6g131330 [Beta vulgaris subsp. vulgaris]	[more]
KYP45148.1	3.9e-04	41.38	hypothetical protein KK1_033352, partial [Cajanus cajan]	[more]

BLAST of CsGy2G025160 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsGy2G025160 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy2G025160 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|C6T4R7\|C6T4R7_SOYBN	1.8e-05	38.24	Uncharacterized protein OS=Glycine max OX=3847 PE=2 SV=1	[more]
tr\|A0A2I0VD93\|A0A2I0VD93_9ASPA	3.1e-05	43.08	Uncharacterized protein OS=Dendrobium catenatum OX=906689 GN=MA16_Dca029031 PE=4...	[more]
tr\|A0A0L9T5S1\|A0A0L9T5S1_PHAAN	1.2e-04	39.73	Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan102s009700 P...	[more]
tr\|A0A0S3S1B6\|A0A0S3S1B6_PHAAN	1.2e-04	39.73	Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.04G...	[more]
tr\|A0A151RRJ8\|A0A151RRJ8_CAJCA	2.6e-04	41.38	Uncharacterized protein (Fragment) OS=Cajanus cajan OX=3821 GN=KK1_033352 PE=4 S...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy2G025160.1	CsGy2G025160.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 43..66
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 50..66

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy2G025160	Cp4.1LG13g11220	Cucurbita pepo (Zucchini)	cgybcpeB183
CsGy2G025160	Carg06053	Silver-seed gourd	carcgybB0017

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy2G025160	Cucurbita maxima (Rimu)	cgybcmaB189
CsGy2G025160	Cucurbita maxima (Rimu)	cgybcmaB248
CsGy2G025160	Cucurbita moschata (Rifu)	cgybcmoB182
CsGy2G025160	Cucurbita moschata (Rifu)	cgybcmoB236
CsGy2G025160	Cucurbita pepo (Zucchini)	cgybcpeB214
CsGy2G025160	Cucumber (Chinese Long) v2	cgybcuB057
CsGy2G025160	Bottle gourd (USVL1VR-Ls)	cgyblsiB102
CsGy2G025160	Melon (DHL92) v3.5.1	cgybmeB099
CsGy2G025160	Melon (DHL92) v3.6.1	cgybmedB098
CsGy2G025160	Watermelon (Charleston Gray)	cgybwcgB098
CsGy2G025160	Watermelon (97103) v1	cgybwmB153
CsGy2G025160	Wild cucumber (PI 183967)	cgybcpiB057
CsGy2G025160	Silver-seed gourd	carcgybB0996
CsGy2G025160	Cucumber (Chinese Long) v3	cgybcucB065
CsGy2G025160	Watermelon (97103) v2	cgybwmbB108
CsGy2G025160	Wax gourd	cgybwgoB159