CsGy2G022450 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy2G022450
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	protein ENL-like
Location	Chr2 : 30792721 .. 30793008 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGATTCTCTTCCCTCCTCCCTCTTTCTCCATCCAGCTCCCTTCCTCTTCCTCTTTCCTCTCGGATCGGACCTCCGCTCCTCCTCCTCCTCCTCCTCCTCCGCCGCCCGACCACCGCCTTGATTCGCCTTTCAACTCTTTCGATTACTGCTCTGATTCCTCTTCCTCGATTGGTGATCCTGATGATAGCGACGACGAGAGCGTTTCATCCACTGGTGGAGATTCTGAGGAAGTTCAAAGTAAATTATCTCTTCGATCGTTGGAGGACTCTCTTCCGATTAAGTAA

mRNA sequence

ATGGAGATTCTCTTCCCTCCTCCCTCTTTCTCCATCCAGCTCCCTTCCTCTTCCTCTTTCCTCTCGGATCGGACCTCCGCTCCTCCTCCTCCTCCTCCTCCTCCGCCGCCCGACCACCGCCTTGATTCGCCTTTCAACTCTTTCGATTACTGCTCTGATTCCTCTTCCTCGATTGGTGATCCTGATGATAGCGACGACGAGAGCGTTTCATCCACTGGTGGAGATTCTGAGGAAGTTCAAAGTAAATTATCTCTTCGATCGTTGGAGGACTCTCTTCCGATTAAGTAA

Coding sequence (CDS)

ATGGAGATTCTCTTCCCTCCTCCCTCTTTCTCCATCCAGCTCCCTTCCTCTTCCTCTTTCCTCTCGGATCGGACCTCCGCTCCTCCTCCTCCTCCTCCTCCTCCGCCGCCCGACCACCGCCTTGATTCGCCTTTCAACTCTTTCGATTACTGCTCTGATTCCTCTTCCTCGATTGGTGATCCTGATGATAGCGACGACGAGAGCGTTTCATCCACTGGTGGAGATTCTGAGGAAGTTCAAAGTAAATTATCTCTTCGATCGTTGGAGGACTCTCTTCCGATTAAGTAA

Protein sequence

MEILFPPPSFSIQLPSSSSFLSDRTSAPPPPPPPPPPDHRLDSPFNSFDYCSDSSSSIGDPDDSDDESVSSTGGDSEEVQSKLSLRSLEDSLPIK

Homology

[Close]

BLAST of CsGy2G022450 vs. NCBI nr
Match: XP_011649757.1 (PREDICTED: serine/threonine-protein kinase STE20 [Cucumis sativus] >KGN62861.1 hypothetical protein Csa_2G377970 [Cucumis sativus])

HSP 1 Score: 122.5 bits (306), Expect = 7.8e-25
Identity = 94/95 (98.95%), Postives = 94/95 (98.95%), Query Frame = 0


Query: 1  MEILFPPPSFSIQLPSXXXXXXXXXXXXXXXXXXXXXXXRLDSPFNSFDYCSDSSSSIGD 60
          MEILFPPPSFSIQLPS XXXXXXXXXXXXXXXXXXXXXXRLDSPFNSFDYCSDSSSSIGD
Sbjct: 1  MEILFPPPSFSIQLPS-XXXXXXXXXXXXXXXXXXXXXXRLDSPFNSFDYCSDSSSSIGD 60

Query: 61 PDDSDDESVSSTGGDSEEVQSKLSLRSLEDSLPIK 96
          PDDSDDESVSSTGGDSEEVQSKLSLRSLEDSLPIK
Sbjct: 61 PDDSDDESVSSTGGDSEEVQSKLSLRSLEDSLPIK 94

[Close]

BLAST of CsGy2G022450 vs. NCBI nr
Match: XP_008445075.1 (PREDICTED: protein ENL-like [Cucumis melo])

HSP 1 Score: 97.4 bits (241), Expect = 2.7e-17
Identity = 87/100 (87.00%), Postives = 91/100 (91.00%), Query Frame = 0


Query: 1  MEILFPPPSFSIQLPSXXXXXXXXXXXXXXXXXXXXXXXRLDSPFNSF-----DYCSDSS 60
          MEILFPPPSFSIQL +XXXXXXXXXXXXXXXXXXXXXXXRLDSP+NSF     DY SDSS
Sbjct: 1  MEILFPPPSFSIQL-AXXXXXXXXXXXXXXXXXXXXXXXRLDSPWNSFADDEIDYSSDSS 60

Query: 61 SSIGDPDDSDDESVSSTGGDSEEVQSKLSLRSLEDSLPIK 96
          SSIG PDDSDDESVSSTG DSEEVQSKLS+RSLE+SLPIK
Sbjct: 61 SSIGVPDDSDDESVSSTGRDSEEVQSKLSIRSLEESLPIK 99

[Close]

BLAST of CsGy2G022450 vs. NCBI nr
Match: XP_022997371.1 (uncharacterized protein LOC111492307 [Cucurbita maxima])

HSP 1 Score: 63.5 bits (153), Expect = 4.3e-07
Identity = 56/118 (47.46%), Postives = 62/118 (52.54%), Query Frame = 0


Query: 1   MEILFPPPSFSIQLPSXXXXXXXXXXXXXXXXXXXXXXXRLDSPFNS------------- 60
           ME+LF PPSF+I   S                       R+DSP+NS             
Sbjct: 1   MEVLFGPPSFTIPDAS------SSSFVRDRTAVSPPPQHRVDSPWNSIKSDFGRFASGKG 60

Query: 61  ----FDYCSDSSSSIGDP-DDSDDESVSSTGGDSEEVQSKL-----SLRSLEDSLPIK 96
                DY SDSSSSIG P DDSD+ESVSSTGGD EEVQSKL     S+ SLE SLPIK
Sbjct: 61  PEDEIDYRSDSSSSIGVPDDDSDEESVSSTGGDREEVQSKLNAGLNSVGSLERSLPIK 112

[Close]

BLAST of CsGy2G022450 vs. NCBI nr
Match: XP_022131923.1 (uncharacterized protein LOC111004943 [Momordica charantia])

HSP 1 Score: 62.8 bits (151), Expect = 7.4e-07
Identity = 56/115 (48.70%), Postives = 63/115 (54.78%), Query Frame = 0


Query: 1   MEILFPPPSFSIQLPSXXXXXXXXXXXXXXXXXXXXXXXRLDSPFNSF------------ 60
           ME+LF  PSF+IQ+PS                        +D+ +N F            
Sbjct: 1   MEVLFGRPSFTIQVPS---SSLFARDRTAAPPLQETPEDAVDATWNCFKSDFGSGKGRED 60

Query: 61  -DYCSDSSSSIGDPDD-SDDESVSST-GGDSEEVQSKL-----SLRSLEDSLPIK 96
            DY SDSSSSIG PDD SDDESVSST GGD EEVQSKL     SL SLE+SLPIK
Sbjct: 61  VDYRSDSSSSIGVPDDVSDDESVSSTAGGDGEEVQSKLNAGICSLGSLEESLPIK 112

[Close]

BLAST of CsGy2G022450 vs. NCBI nr
Match: XP_023546188.1 (uncharacterized protein LOC111805363 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 62.8 bits (151), Expect = 7.4e-07
Identity = 55/118 (46.61%), Postives = 62/118 (52.54%), Query Frame = 0


Query: 1   MEILFPPPSFSIQLPSXXXXXXXXXXXXXXXXXXXXXXXRLDSPFNS------------- 60
           ME+LF PPSF+I   S                       R++SP+NS             
Sbjct: 1   MEVLFGPPSFTIPDAS------SSSFVRDRTAVSPPPQLRVESPWNSIKSDFGRFASGKS 60

Query: 61  ----FDYCSDSSSSIGDPDD-SDDESVSSTGGDSEEVQSKL-----SLRSLEDSLPIK 96
                DY SDSSSSIG PDD SD+ESVSSTGGD EEVQSKL     S+ SLE SLPIK
Sbjct: 61  PEDEIDYRSDSSSSIGVPDDHSDEESVSSTGGDREEVQSKLNAGLNSVESLERSLPIK 112

[Close]

BLAST of CsGy2G022450 vs. TrEMBL
Match: tr|A0A0A0LS78|A0A0A0LS78_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G377970 PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 5.2e-25
Identity = 94/95 (98.95%), Postives = 94/95 (98.95%), Query Frame = 0


Query: 1  MEILFPPPSFSIQLPSXXXXXXXXXXXXXXXXXXXXXXXRLDSPFNSFDYCSDSSSSIGD 60
          MEILFPPPSFSIQLPS XXXXXXXXXXXXXXXXXXXXXXRLDSPFNSFDYCSDSSSSIGD
Sbjct: 1  MEILFPPPSFSIQLPS-XXXXXXXXXXXXXXXXXXXXXXRLDSPFNSFDYCSDSSSSIGD 60

Query: 61 PDDSDDESVSSTGGDSEEVQSKLSLRSLEDSLPIK 96
          PDDSDDESVSSTGGDSEEVQSKLSLRSLEDSLPIK
Sbjct: 61 PDDSDDESVSSTGGDSEEVQSKLSLRSLEDSLPIK 94

[Close]

BLAST of CsGy2G022450 vs. TrEMBL
Match: tr|A0A1S3BCK4|A0A1S3BCK4_CUCME (protein ENL-like OS=Cucumis melo OX=3656 GN=LOC103488223 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 1.8e-17
Identity = 87/100 (87.00%), Postives = 91/100 (91.00%), Query Frame = 0


Query: 1  MEILFPPPSFSIQLPSXXXXXXXXXXXXXXXXXXXXXXXRLDSPFNSF-----DYCSDSS 60
          MEILFPPPSFSIQL +XXXXXXXXXXXXXXXXXXXXXXXRLDSP+NSF     DY SDSS
Sbjct: 1  MEILFPPPSFSIQL-AXXXXXXXXXXXXXXXXXXXXXXXRLDSPWNSFADDEIDYSSDSS 60

Query: 61 SSIGDPDDSDDESVSSTGGDSEEVQSKLSLRSLEDSLPIK 96
          SSIG PDDSDDESVSSTG DSEEVQSKLS+RSLE+SLPIK
Sbjct: 61 SSIGVPDDSDDESVSSTGRDSEEVQSKLSIRSLEESLPIK 99

The following BLAST results are available for this feature:

BLAST of CsGy2G022450 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011649757.1	7.8e-25	98.95	PREDICTED: serine/threonine-protein kinase STE20 [Cucumis sativus] >KGN62861.1 h...	[more]
XP_008445075.1	2.7e-17	87.00	PREDICTED: protein ENL-like [Cucumis melo]	[more]
XP_022997371.1	4.3e-07	47.46	uncharacterized protein LOC111492307 [Cucurbita maxima]	[more]
XP_022131923.1	7.4e-07	48.70	uncharacterized protein LOC111004943 [Momordica charantia]	[more]
XP_023546188.1	7.4e-07	46.61	uncharacterized protein LOC111805363 [Cucurbita pepo subsp. pepo]	[more]

BLAST of CsGy2G022450 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsGy2G022450 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy2G022450 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LS78\|A0A0A0LS78_CUCSA	5.2e-25	98.95	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G377970 PE=4 SV=1	[more]
tr\|A0A1S3BCK4\|A0A1S3BCK4_CUCME	1.8e-17	87.00	protein ENL-like OS=Cucumis melo OX=3656 GN=LOC103488223 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy2G022450.1	CsGy2G022450.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 14..95
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 25..41
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 73..87

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy2G022450	Cla022252	Watermelon (97103) v1	cgybwmB105
CsGy2G022450	ClCG08G012630	Watermelon (Charleston Gray)	cgybwcgB152
CsGy2G022450	CmaCh05G006240	Cucurbita maxima (Rimu)	cgybcmaB251
CsGy2G022450	CmaCh12G002970	Cucurbita maxima (Rimu)	cgybcmaB182
CsGy2G022450	CmoCh12G002490	Cucurbita moschata (Rifu)	cgybcmoB174
CsGy2G022450	CmoCh05G006510	Cucurbita moschata (Rifu)	cgybcmoB239
CsGy2G022450	Lsi08G011210	Bottle gourd (USVL1VR-Ls)	cgyblsiB126
CsGy2G022450	Cp4.1LG11g05350	Cucurbita pepo (Zucchini)	cgybcpeB162
CsGy2G022450	CsaV3_2G031340	Cucumber (Chinese Long) v3	cgybcucB065
CsGy2G022450	Carg08308	Silver-seed gourd	carcgybB0060
CsGy2G022450	Carg03887	Silver-seed gourd	carcgybB0963

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy2G022450	Wax gourd	cgybwgoB158
CsGy2G022450	Wax gourd	cgybwgoB194
CsGy2G022450	Cucumber (Gy14) v2	cgybcgybB049
CsGy2G022450	Cucurbita maxima (Rimu)	cgybcmaB148
CsGy2G022450	Cucurbita maxima (Rimu)	cgybcmaB168
CsGy2G022450	Cucurbita maxima (Rimu)	cgybcmaB206
CsGy2G022450	Cucurbita moschata (Rifu)	cgybcmoB139
CsGy2G022450	Cucurbita moschata (Rifu)	cgybcmoB160
CsGy2G022450	Cucurbita moschata (Rifu)	cgybcmoB200
CsGy2G022450	Cucurbita pepo (Zucchini)	cgybcpeB223
CsGy2G022450	Cucurbita pepo (Zucchini)	cgybcpeB255
CsGy2G022450	Cucurbita pepo (Zucchini)	cgybcpeB260
CsGy2G022450	Cucurbita pepo (Zucchini)	cgybcpeB276
CsGy2G022450	Cucumber (Chinese Long) v2	cgybcuB057
CsGy2G022450	Cucumber (Chinese Long) v2	cgybcuB068
CsGy2G022450	Bottle gourd (USVL1VR-Ls)	cgyblsiB110
CsGy2G022450	Melon (DHL92) v3.6.1	cgybmedB101
CsGy2G022450	Melon (DHL92) v3.5.1	cgybmeB102
CsGy2G022450	Melon (DHL92) v3.5.1	cgybmeB106
CsGy2G022450	Melon (DHL92) v3.6.1	cgybmedB105
CsGy2G022450	Wild cucumber (PI 183967)	cgybcpiB069
CsGy2G022450	Wild cucumber (PI 183967)	cgybcpiB057
CsGy2G022450	Silver-seed gourd	carcgybB0557
CsGy2G022450	Silver-seed gourd	carcgybB0630
CsGy2G022450	Silver-seed gourd	carcgybB0960
CsGy2G022450	Cucumber (Chinese Long) v3	cgybcucB074
CsGy2G022450	Watermelon (97103) v2	cgybwmbB153