CsGy2G016390 (gene) Cucumber (Gy14) v2

Overview
NameCsGy2G016390
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
Descriptionglutamate receptor 3.4
LocationChr2 : 16390430 .. 16393232 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATTATTGCGATAAGCTTCTTAAAGAAAATGGAAATATCATTACATTTTCACCCACAGGTGAAGTGTTTGACTCTAATGAAAGTGGAATTCAATTAGGTAAATTTGAAGTGTTTGATAAAGGGTTGATCATAGTTGCATCAATTGAAGATTCAAAATCAAGTGCTTGGGTGTTCCTTAGACCATTTACAGTTATAGGTTCCTTCATGGTAATTGGTATTGTTATTTGGATTTTGCAACATTTTTACTTAACAATCCTAGTGTGTTTCTCTTTGTTAGGTTTAGCTTTTCAACTCTTTTTAAGGCAAATCGCAAGTTCTTTTCGTTTTAGAACTTCGTATATGGGTTTAGCTTTTCAACTCTTTTCAAGGCAAATTGCAAGTTCTTTTCTTTTCAGAACTTCGTATATGGGTTTAGCTTTTCAACTCTTTTCAAGGCAAATCGTAAGTTCTTTTCTTTTTAGAACTCCGTAAATTCCCATAGAACGTGTAATTGTTTATAATGTGTAATTGCTAACATATCTAGTGTTTTATGCACACATACATACACACTTAAACTCTCTGTATTTGTCTCTTTTTGTCTCCACACTACTACAAAAATTAGTTTACTTCACATTAATACAGTGTCAAGTAATCGACTGTCAAGTATAGTCACATTACTTAACACTTACAAGTTTTGTACTGGCAAGTTTAGAGTTTTACTTACAAGTTATAACTACCACACACATGTTCAAAATTCAAAATCTACTCTACTATGAAGCTTTATTTGATCATCGGCCTACAATATGGGTAAAGAATTGTTCTTCCTAATTATGGTTGATTAATCATTGATgtccttaAAAGTAGAAACGTGACATATCATGTATGCCCTTAAGTATCTCAAGCTTGTGTAGGCCAAGTTCAAAAAAGAAAATCAATTATGTTTAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacaaacttcatagtttatggactaaaataagaacatactccaacaaaaaacaatatattgtatatagttgtaacataaatgagtttgaatgtggttgatgatgatacagggttccttgcaaaaagagaggaggtgtaagattcacagtgaatggaagagattattttgaacttgttctaataaccaacgtgggaggagcgggtgacatcaagtcagtgtctattaaaggctctaaatcaagcaattggaccccaatgtcaaggaattGgggggccaattggcaatccaattcctatctaaatggccaatctttgtccttcaaggtcaccacaagtgatgggcaagtccaagttttcaacaatgttgtgccttcatcttggagatttggccaaacatttgccagcaaggtccaattcagctgaggaaattaagaccccgctcgggtctaggatcgtgggtttaggggtgatcggattggcagaggcgtgcccaagtggttttttttaatctacggaagcagcccgccatcttaatttcagctatctggttaccgtttttatgaaaaagatccacgacattattcctaactgatggaagtttgaatttgtgtgaggaaagtaataagaagctaaaggaaattacttttgtggcttcaaaatataggtatcttcaattactcatataaagtttttctttttcttttatctcttaaagtcaatttgtaaggttggtttgtaacaagctatataatatatatatatatcaacaactttattttgtttgttaaactgtgtttcgtatcttatgtttgtctctaatctatttccactggttaattaattataattttaatacttgaagtttgagttttgagtcaagttagttcaagtctcacacttcaacgttaaaatcccaatatttcatagatgtttaattttggtccctcaatctacagcgtaactaa

mRNA sequence

ATGGATTATTGCGATAAGCTTCTTAAAGAAAATGGAAATATCATTACATTTTCACCCACAGGTGAAGTGTTTGACTCTAATGAAAGTGGAATTCAATTAGGTAAATTTGAAGTGTTTGATAAAGGGTTGATCATAGTTGCATCAATTGAAGATTCAAAATCAAGTGCTTGGGTGTTCCTTAGACCATTTACAGTTATAGGTTCCTTCATGAACTTCGTATATGGGTTTAGCTTTTCAACTCTTTTCAAGGCAAATTGCAAGTTCTTTTCTTTTCAGAACTTCGTATATGGGTTTAGCTTTTCAACTCTTTTCAAGGCAAATCGGTTCCTTGCAAAAAGAGAGGAGGTGTCACCACAAGTGATGGGCAAGTCCAAGTTTTCAACAATGTTGTGCCTTCATCTTGGAGATTTGGCCAAACATTTGCCAGCAAGGTCCAATTCAGCTGAGGAAATTAAGACCCCGCTCGGGTCTAGGATCGTATCTTCAATTACTCATATAAAGTTTTTCTTTTTCTTTTATCTCTTAAAGTCAATTTGTAAGCGTAACTAA

Coding sequence (CDS)

ATGGATTATTGCGATAAGCTTCTTAAAGAAAATGGAAATATCATTACATTTTCACCCACAGGTGAAGTGTTTGACTCTAATGAAAGTGGAATTCAATTAGGTAAATTTGAAGTGTTTGATAAAGGGTTGATCATAGTTGCATCAATTGAAGATTCAAAATCAAGTGCTTGGGTGTTCCTTAGACCATTTACAGTTATAGGTTCCTTCATGAACTTCGTATATGGGTTTAGCTTTTCAACTCTTTTCAAGGCAAATTGCAAGTTCTTTTCTTTTCAGAACTTCGTATATGGGTTTAGCTTTTCAACTCTTTTCAAGGCAAATCggttccttgcaaaaagagaggaggtgtcaccacaagtgatgggcaagtccaagttttcaacaatgttgtgccttcatcttggagatttggccaaacatttgccagcaaggtccaattcagctgaggaaattaagaccccgctcgggtctaggatcgtatcttcaattactcatataaagtttttctttttcttttatctcttaaagtcaatttgtaagcgtaactaa

Protein sequence

MDYCDKLLKENGNIITFSPTGEVFDSNESGIQLGKFEVFDKGLIIVASIEDSKSSAWVFLRPFTVIGSFMNFVYGFSFSTLFKANCKFFSFQNFVYGFSFSTLFKANRFLAKREEVSPQVMGKSKFSTMLCLHLGDLAKHLPARSNSAEEIKTPLGSRIVSSITHIKFFFFFYLLKSICKRN
Homology
[Close]
BLAST of CsGy2G016390 vs. NCBI nr
Match: XP_008455424.1 (PREDICTED: glutamate receptor 3.7 isoform X1 [Cucumis melo])

HSP 1 Score: 67.4 bits (163), Expect = 5.7e-08
Identity = 30/38 (78.95%), Postives = 34/38 (89.47%), Query Frame = 0 

Query: 5   DKLLKENGNIITFSPTGEVFDSNESGIQLGKFEVFDKG 43
           DK LKENG I+TFSPTG+VF SNESGIQLGK +VFD+G
Sbjct: 335 DKFLKENGTIVTFSPTGKVFGSNESGIQLGKVKVFDRG 372

[Close]
BLAST of CsGy2G016390 vs. NCBI nr
Match: XP_008455425.1 (PREDICTED: glutamate receptor 3.7 isoform X2 [Cucumis melo])

HSP 1 Score: 67.4 bits (163), Expect = 5.7e-08
Identity = 30/38 (78.95%), Postives = 34/38 (89.47%), Query Frame = 0 

Query: 5   DKLLKENGNIITFSPTGEVFDSNESGIQLGKFEVFDKG 43
           DK LKENG I+TFSPTG+VF SNESGIQLGK +VFD+G
Sbjct: 264 DKFLKENGTIVTFSPTGKVFGSNESGIQLGKVKVFDRG 301

[Close]
BLAST of CsGy2G016390 vs. NCBI nr
Match: XP_004144586.1 (PREDICTED: glutamate receptor 3.7 isoform X1 [Cucumis sativus] >KGN43530.1 hypothetical protein Csa_7G044210 [Cucumis sativus])

HSP 1 Score: 65.9 bits (159), Expect = 1.7e-07
Identity = 30/38 (78.95%), Postives = 33/38 (86.84%), Query Frame = 0 

Query: 5   DKLLKENGNIITFSPTGEVFDSNESGIQLGKFEVFDKG 43
           DK LKENGNIITFSPTG+V  SNESGIQLG  +VFD+G
Sbjct: 335 DKFLKENGNIITFSPTGKVLGSNESGIQLGNVKVFDRG 372

[Close]
BLAST of CsGy2G016390 vs. NCBI nr
Match: XP_011658702.1 (PREDICTED: glutamate receptor 3.7 isoform X2 [Cucumis sativus])

HSP 1 Score: 65.9 bits (159), Expect = 1.7e-07
Identity = 30/38 (78.95%), Postives = 33/38 (86.84%), Query Frame = 0 

Query: 5   DKLLKENGNIITFSPTGEVFDSNESGIQLGKFEVFDKG 43
           DK LKENGNIITFSPTG+V  SNESGIQLG  +VFD+G
Sbjct: 264 DKFLKENGNIITFSPTGKVLGSNESGIQLGNVKVFDRG 301

[Close]
BLAST of CsGy2G016390 vs. TrEMBL
Match: tr|A0A1S3C1L6|A0A1S3C1L6_CUCME (Glutamate receptor OS=Cucumis melo OX=3656 GN=LOC103495587 PE=3 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 3.8e-08
Identity = 30/38 (78.95%), Postives = 34/38 (89.47%), Query Frame = 0 

Query: 5   DKLLKENGNIITFSPTGEVFDSNESGIQLGKFEVFDKG 43
           DK LKENG I+TFSPTG+VF SNESGIQLGK +VFD+G
Sbjct: 264 DKFLKENGTIVTFSPTGKVFGSNESGIQLGKVKVFDRG 301

[Close]
BLAST of CsGy2G016390 vs. TrEMBL
Match: tr|A0A1S3C0W0|A0A1S3C0W0_CUCME (Glutamate receptor OS=Cucumis melo OX=3656 GN=LOC103495587 PE=3 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 3.8e-08
Identity = 30/38 (78.95%), Postives = 34/38 (89.47%), Query Frame = 0 

Query: 5   DKLLKENGNIITFSPTGEVFDSNESGIQLGKFEVFDKG 43
           DK LKENG I+TFSPTG+VF SNESGIQLGK +VFD+G
Sbjct: 335 DKFLKENGTIVTFSPTGKVFGSNESGIQLGKVKVFDRG 372

[Close]
BLAST of CsGy2G016390 vs. TrEMBL
Match: tr|A0A0A0K1M2|A0A0A0K1M2_CUCSA (Glutamate receptor OS=Cucumis sativus OX=3659 GN=Csa_7G044210 PE=3 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 1.1e-07
Identity = 30/38 (78.95%), Postives = 33/38 (86.84%), Query Frame = 0 

Query: 5   DKLLKENGNIITFSPTGEVFDSNESGIQLGKFEVFDKG 43
           DK LKENGNIITFSPTG+V  SNESGIQLG  +VFD+G
Sbjct: 335 DKFLKENGNIITFSPTGKVLGSNESGIQLGNVKVFDRG 372

The following BLAST results are available for this feature:
BLAST of CsGy2G016390 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008455424.15.7e-0878.95PREDICTED: glutamate receptor 3.7 isoform X1 [Cucumis melo][more]
XP_008455425.15.7e-0878.95PREDICTED: glutamate receptor 3.7 isoform X2 [Cucumis melo][more]
XP_004144586.11.7e-0778.95PREDICTED: glutamate receptor 3.7 isoform X1 [Cucumis sativus] >KGN43530.1 hypot... [more]
XP_011658702.11.7e-0778.95PREDICTED: glutamate receptor 3.7 isoform X2 [Cucumis sativus][more]
BLAST of CsGy2G016390 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsGy2G016390 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsGy2G016390 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3C1L6|A0A1S3C1L6_CUCME3.8e-0878.95Glutamate receptor OS=Cucumis melo OX=3656 GN=LOC103495587 PE=3 SV=1[more]
tr|A0A1S3C0W0|A0A1S3C0W0_CUCME3.8e-0878.95Glutamate receptor OS=Cucumis melo OX=3656 GN=LOC103495587 PE=3 SV=1[more]
tr|A0A0A0K1M2|A0A0A0K1M2_CUCSA1.1e-0778.95Glutamate receptor OS=Cucumis sativus OX=3659 GN=Csa_7G044210 PE=3 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007186 G-protein coupled receptor signaling pathway
biological_process GO:0035235 ionotropic glutamate receptor signaling pathway
biological_process GO:0006811 ion transport
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0004930 G-protein coupled receptor activity
molecular_function GO:0004970 ionotropic glutamate receptor activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy2G016390.1CsGy2G016390.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsGy2G016390Cucurbita maxima (Rimu)cgybcmaB245
CsGy2G016390Cucurbita moschata (Rifu)cgybcmoB233
CsGy2G016390Cucurbita pepo (Zucchini)cgybcpeB211
CsGy2G016390Watermelon (Charleston Gray)cgybwcgB158
CsGy2G016390Watermelon (97103) v1cgybwmB111
CsGy2G016390Silver-seed gourdcarcgybB0682
CsGy2G016390Cucumber (Chinese Long) v3cgybcucB064