CsGy2G009820 (gene) Cucumber (Gy14) v2

Overview
NameCsGy2G009820
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
DescriptionRNA-directed DNA polymerase
LocationChr2 : 9395523 .. 9395998 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCAAAAGCAATTGTCAATATCAGTGATAGAGTAAAGCAACATCTTCAACAAGCCAACACAGAATATAAAAAGCATGCTGACCAAAAATGACGAGATGAAAATTTTCAGGTTGGAGATCTCGTTATGGCTTGCCTTCGACTAGAGAGACATTTGTTGGTTCGTAGTCCAAGTTAAAACCTCAAAGACTTGGTATCTTGAGAAAAATTGGTGGTAATGCTTATGTTTTGGACTTACCATCATCAATCTACACGTCCTCTACCTTTAATGTCTTAAATTTGACTATGTACCACCCACGAGATGTTGCACCGACGATTAAAAAATTTGAAAATGAGAAGTTTGACACGAAATCGGACTGCGCAAACTCGTCAATGGGGAACATCTTGACAAAGGATGCCAATCACACTGAGTTGCTCCCAGTAGCCATGTTGATCAGAGAAGATCATTTACCTACAACAGTTGTCAATGTGAGGATA

mRNA sequence

ATGTCAAAAGCAATTGTCAATATCAGTGATAGATCCAAGTTAAAACCTCAAAGACTTGGTATCTTGAGAAAAATTGGTGGTAATGCTTATGTTTTGGACTTACCATCATCAATCTACACGTCCTCTACCTTTAATGTCTTAAATTTGACTATGTACCACCCACGAGATGTTGCACCGACGATTAAAAAATTTGAAAATGAGAAGTTTGACACGAAATCGGACTGCGCAAACTCGTCAATGGGGAACATCTTGACAAAGGATGCCAATCACACTGAGTTGCTCCCAGTAGCCATGTTGATCAGAGAAGATCATTTACCTACAACAGTTGTCAATGTGAGGATA

Coding sequence (CDS)

ATGTCAAAAGCAATTGTCAATATCAGTGATAGATCCAAGTTAAAACCTCAAAGACTTGGTATCTTGAGAAAAATTGGTGGTAATGCTTATGTTTTGGACTTACCATCATCAATCTACACGTCCTCTACCTTTAATGTCTTAAATTTGACTATGTACCACCCACGAGATGTTGCACCGACGATTAAAAAATTTGAAAATGAGAAGTTTGACACGAAATCGGACTGCGCAAACTCGTCAATGGGGAACATCTTGACAAAGGATGCCAATCACACTGAGTTGCTCCCAGTAGCCATGTTGATCAGAGAAGATCATTTACCTACAACAGTTGTCAATGTGAGGATA

Protein sequence

MSKAIVNISDRSKLKPQRLGILRKIGGNAYVLDLPSSIYTSSTFNVLNLTMYHPRDVAPTIKKFENEKFDTKSDCANSSMGNILTKDANHTELLPVAMLIREDHLPTTVVNVRI
Homology
[Close]
BLAST of CsGy2G009820 vs. NCBI nr
Match: KGN61529.1 (hypothetical protein Csa_2G162120 [Cucumis sativus])

HSP 1 Score: 226.5 bits (576), Expect = 4.6e-56
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 0 

Query: 1   MSKAIVNISDRSKLKPQRLGILRKIGGNAYVLDLPSSIYTSSTFNVLNLTMYHPRDVAPT 60
           MSKAIVNISDRSKLKPQRLGILRKIGGNAYVLDLPSSIYTSSTFNVLNLTMYHPRDVAPT
Sbjct: 8   MSKAIVNISDRSKLKPQRLGILRKIGGNAYVLDLPSSIYTSSTFNVLNLTMYHPRDVAPT 67

Query: 61  IKKFENEKFDTKSDCANSSMGNILTKDANHTELLPVAMLIREDHLPTTVVNVRI 115
           IKKFENEKFDTKSDCANSSMGNILTKDANHTELLPVAMLIREDHLPTTVVNVRI
Sbjct: 68  IKKFENEKFDTKSDCANSSMGNILTKDANHTELLPVAMLIREDHLPTTVVNVRI 121

[Close]
BLAST of CsGy2G009820 vs. NCBI nr
Match: PKU64118.1 (hypothetical protein MA16_Dca008024 [Dendrobium catenatum])

HSP 1 Score: 64.3 bits (155), Expect = 3.0e-07
Identity = 32/53 (60.38%), Postives = 40/53 (75.47%), Query Frame = 0 

Query: 12  SKLKPQRLG---ILRKIGGNAYVLDLPSSIYTSSTFNVLNLTMYHPRDVAPTI 62
           SKL P+++G   ILRKI  NAY++DLP+SI TSSTFNV ++  YHP D A TI
Sbjct: 202 SKLSPKKIGPFPILRKINDNAYIIDLPASIQTSSTFNVSDIYRYHPPDAADTI 254

[Close]
BLAST of CsGy2G009820 vs. NCBI nr
Match: PKU75814.1 (hypothetical protein MA16_Dca018315 [Dendrobium catenatum])

HSP 1 Score: 63.2 bits (152), Expect = 6.8e-07
Identity = 30/53 (56.60%), Postives = 41/53 (77.36%), Query Frame = 0 

Query: 11  RSKLKPQRLG---ILRKIGGNAYVLDLPSSIYTSSTFNVLNLTMYHPRDVAPT 61
           +SKL P+++G   +L++I  NAYV+DLPS   TSSTFN+ +LT+YHP D APT
Sbjct: 120 KSKLSPRKIGPFAVLKQINPNAYVVDLPSHYNTSSTFNIGDLTVYHPPDAAPT 172

[Close]
BLAST of CsGy2G009820 vs. NCBI nr
Match: PKU67703.1 (RNA-directed DNA polymerase [Dendrobium catenatum])

HSP 1 Score: 60.1 bits (144), Expect = 5.7e-06
Identity = 31/52 (59.62%), Postives = 38/52 (73.08%), Query Frame = 0 

Query: 12  SKLKPQRLG---ILRKIGGNAYVLDLPSSIYTSSTFNVLNLTMYHPRDVAPT 61
           SKL P+++G   ILRKI  NAYV+DLP+ I TSSTFNV ++  YHP D A T
Sbjct: 770 SKLSPRKIGPFSILRKINDNAYVIDLPAHIQTSSTFNVADIHEYHPPDDADT 821

[Close]
BLAST of CsGy2G009820 vs. NCBI nr
Match: PKU83407.1 (RNA-directed DNA polymerase [Dendrobium catenatum])

HSP 1 Score: 60.1 bits (144), Expect = 5.7e-06
Identity = 28/53 (52.83%), Postives = 40/53 (75.47%), Query Frame = 0 

Query: 12  SKLKPQRLG---ILRKIGGNAYVLDLPSSIYTSSTFNVLNLTMYHPRDVAPTI 62
           +KL P+++G   +LRKI  NAYV+DLP+ ++TSSTFNV ++  YHP D A T+
Sbjct: 770 TKLSPRKIGPFPVLRKINDNAYVIDLPAELHTSSTFNVSDIHSYHPPDDANTV 822

[Close]
BLAST of CsGy2G009820 vs. TrEMBL
Match: tr|A0A0A0LKH8|A0A0A0LKH8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G162120 PE=4 SV=1)

HSP 1 Score: 226.5 bits (576), Expect = 3.1e-56
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 0 

Query: 1   MSKAIVNISDRSKLKPQRLGILRKIGGNAYVLDLPSSIYTSSTFNVLNLTMYHPRDVAPT 60
           MSKAIVNISDRSKLKPQRLGILRKIGGNAYVLDLPSSIYTSSTFNVLNLTMYHPRDVAPT
Sbjct: 8   MSKAIVNISDRSKLKPQRLGILRKIGGNAYVLDLPSSIYTSSTFNVLNLTMYHPRDVAPT 67

Query: 61  IKKFENEKFDTKSDCANSSMGNILTKDANHTELLPVAMLIREDHLPTTVVNVRI 115
           IKKFENEKFDTKSDCANSSMGNILTKDANHTELLPVAMLIREDHLPTTVVNVRI
Sbjct: 68  IKKFENEKFDTKSDCANSSMGNILTKDANHTELLPVAMLIREDHLPTTVVNVRI 121

[Close]
BLAST of CsGy2G009820 vs. TrEMBL
Match: tr|A0A2I0VL32|A0A2I0VL32_9ASPA (Uncharacterized protein OS=Dendrobium catenatum OX=906689 GN=MA16_Dca008024 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 2.0e-07
Identity = 32/53 (60.38%), Postives = 40/53 (75.47%), Query Frame = 0 

Query: 12  SKLKPQRLG---ILRKIGGNAYVLDLPSSIYTSSTFNVLNLTMYHPRDVAPTI 62
           SKL P+++G   ILRKI  NAY++DLP+SI TSSTFNV ++  YHP D A TI
Sbjct: 202 SKLSPKKIGPFPILRKINDNAYIIDLPASIQTSSTFNVSDIYRYHPPDAADTI 254

[Close]
BLAST of CsGy2G009820 vs. TrEMBL
Match: tr|A0A2I0WJI0|A0A2I0WJI0_9ASPA (Uncharacterized protein OS=Dendrobium catenatum OX=906689 GN=MA16_Dca018315 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 4.5e-07
Identity = 30/53 (56.60%), Postives = 41/53 (77.36%), Query Frame = 0 

Query: 11  RSKLKPQRLG---ILRKIGGNAYVLDLPSSIYTSSTFNVLNLTMYHPRDVAPT 61
           +SKL P+++G   +L++I  NAYV+DLPS   TSSTFN+ +LT+YHP D APT
Sbjct: 120 KSKLSPRKIGPFAVLKQINPNAYVVDLPSHYNTSSTFNIGDLTVYHPPDAAPT 172

[Close]
BLAST of CsGy2G009820 vs. TrEMBL
Match: tr|A0A2I0VWB5|A0A2I0VWB5_9ASPA (RNA-directed DNA polymerase OS=Dendrobium catenatum OX=906689 GN=MA16_Dca013733 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 3.8e-06
Identity = 31/52 (59.62%), Postives = 38/52 (73.08%), Query Frame = 0 

Query: 12  SKLKPQRLG---ILRKIGGNAYVLDLPSSIYTSSTFNVLNLTMYHPRDVAPT 61
           SKL P+++G   ILRKI  NAYV+DLP+ I TSSTFNV ++  YHP D A T
Sbjct: 770 SKLSPRKIGPFSILRKINDNAYVIDLPAHIQTSSTFNVADIHEYHPPDDADT 821

[Close]
BLAST of CsGy2G009820 vs. TrEMBL
Match: tr|A0A2I0X674|A0A2I0X674_9ASPA (RNA-directed DNA polymerase OS=Dendrobium catenatum OX=906689 GN=MA16_Dca016516 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 3.8e-06
Identity = 28/53 (52.83%), Postives = 40/53 (75.47%), Query Frame = 0 

Query: 12  SKLKPQRLG---ILRKIGGNAYVLDLPSSIYTSSTFNVLNLTMYHPRDVAPTI 62
           +KL P+++G   +LRKI  NAYV+DLP+ ++TSSTFNV ++  YHP D A T+
Sbjct: 770 TKLSPRKIGPFPVLRKINDNAYVIDLPAELHTSSTFNVSDIHSYHPPDDANTV 822

The following BLAST results are available for this feature:
BLAST of CsGy2G009820 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN61529.14.6e-56100.00hypothetical protein Csa_2G162120 [Cucumis sativus][more]
PKU64118.13.0e-0760.38hypothetical protein MA16_Dca008024 [Dendrobium catenatum][more]
PKU75814.16.8e-0756.60hypothetical protein MA16_Dca018315 [Dendrobium catenatum][more]
PKU67703.15.7e-0659.62RNA-directed DNA polymerase [Dendrobium catenatum][more]
PKU83407.15.7e-0652.83RNA-directed DNA polymerase [Dendrobium catenatum][more]
BLAST of CsGy2G009820 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsGy2G009820 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsGy2G009820 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LKH8|A0A0A0LKH8_CUCSA3.1e-56100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G162120 PE=4 SV=1[more]
tr|A0A2I0VL32|A0A2I0VL32_9ASPA2.0e-0760.38Uncharacterized protein OS=Dendrobium catenatum OX=906689 GN=MA16_Dca008024 PE=4... [more]
tr|A0A2I0WJI0|A0A2I0WJI0_9ASPA4.5e-0756.60Uncharacterized protein OS=Dendrobium catenatum OX=906689 GN=MA16_Dca018315 PE=4... [more]
tr|A0A2I0VWB5|A0A2I0VWB5_9ASPA3.8e-0659.62RNA-directed DNA polymerase OS=Dendrobium catenatum OX=906689 GN=MA16_Dca013733 ... [more]
tr|A0A2I0X674|A0A2I0X674_9ASPA3.8e-0652.83RNA-directed DNA polymerase OS=Dendrobium catenatum OX=906689 GN=MA16_Dca016516 ... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
cellular_component GO:0005575 cellular_component
molecular_function GO:0003676 nucleic acid binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy2G009820.1CsGy2G009820.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsGy2G009820Csa2G162120Cucumber (Chinese Long) v2cgybcuB056
CsGy2G009820CsaV3_2G012090Cucumber (Chinese Long) v3cgybcucB064
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsGy2G009820Cucumber (Chinese Long) v2cgybcuB065
CsGy2G009820Bottle gourd (USVL1VR-Ls)cgyblsiB080
CsGy2G009820Bottle gourd (USVL1VR-Ls)cgyblsiB115
CsGy2G009820Melon (DHL92) v3.5.1cgybmeB122
CsGy2G009820Melon (DHL92) v3.5.1cgybmeB126
CsGy2G009820Melon (DHL92) v3.6.1cgybmedB120
CsGy2G009820Melon (DHL92) v3.6.1cgybmedB124
CsGy2G009820Watermelon (Charleston Gray)cgybwcgB129
CsGy2G009820Watermelon (Charleston Gray)cgybwcgB143
CsGy2G009820Watermelon (Charleston Gray)cgybwcgB149
CsGy2G009820Watermelon (97103) v1cgybwmB117
CsGy2G009820Watermelon (97103) v1cgybwmB163
CsGy2G009820Wild cucumber (PI 183967)cgybcpiB056
CsGy2G009820Wild cucumber (PI 183967)cgybcpiB066
CsGy2G009820Silver-seed gourdcarcgybB0243
CsGy2G009820Silver-seed gourdcarcgybB0250
CsGy2G009820Silver-seed gourdcarcgybB0945
CsGy2G009820Silver-seed gourdcarcgybB1056
CsGy2G009820Cucumber (Chinese Long) v3cgybcucB070
CsGy2G009820Cucumber (Chinese Long) v3cgybcucB076
CsGy2G009820Watermelon (97103) v2cgybwmbB124
CsGy2G009820Watermelon (97103) v2cgybwmbB141
CsGy2G009820Watermelon (97103) v2cgybwmbB148
CsGy2G009820Wax gourdcgybwgoB117
CsGy2G009820Wax gourdcgybwgoB123
CsGy2G009820Cucumber (Gy14) v2cgybcgybB045
CsGy2G009820Cucumber (Gy14) v2cgybcgybB052
CsGy2G009820Cucurbita maxima (Rimu)cgybcmaB188
CsGy2G009820Cucurbita maxima (Rimu)cgybcmaB193
CsGy2G009820Cucurbita maxima (Rimu)cgybcmaB226
CsGy2G009820Cucurbita maxima (Rimu)cgybcmaB262
CsGy2G009820Cucurbita maxima (Rimu)cgybcmaB268
CsGy2G009820Cucurbita moschata (Rifu)cgybcmoB181
CsGy2G009820Cucurbita moschata (Rifu)cgybcmoB186
CsGy2G009820Cucurbita moschata (Rifu)cgybcmoB219
CsGy2G009820Cucurbita moschata (Rifu)cgybcmoB247
CsGy2G009820Cucurbita moschata (Rifu)cgybcmoB254
CsGy2G009820Cucurbita pepo (Zucchini)cgybcpeB175
CsGy2G009820Cucurbita pepo (Zucchini)cgybcpeB203
CsGy2G009820Cucurbita pepo (Zucchini)cgybcpeB231
CsGy2G009820Cucurbita pepo (Zucchini)cgybcpeB249
CsGy2G009820Cucurbita pepo (Zucchini)cgybcpeB278